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path: root/gnu/packages/bioconductor.scm
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2024-12-03gnu: Add r-illuminadatatestfiles.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-illuminadatatestfiles): New variable. Change-Id: I6d1d3f342c8f6587557b18d5071d19e1e4e6aa28
2024-12-03gnu: r-gypsum: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gypsum)[arguments]: Disable tests. Change-Id: Ibec4e3986a6257b20e6a01a8286f1d6ce682171e
2024-12-03gnu: r-trnadbimport: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-trnadbimport)[native-inputs]: Add r-httptest. Change-Id: Ib654aa76d9a960c3d6cbc50264536af400bfd3e5
2024-12-03gnu: r-anvil: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-anvil)[native-inputs]: Add r-testthat. Change-Id: Id8cc0f631a7923204d0778d3e2da1b15c7d4fc68
2024-12-03gnu: r-biobroom: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biobroom)[native-inputs]: Add r-deseq2 and r-edger. Change-Id: I231026845896b2162d34724ba405a2f5bbacc56e
2024-12-03gnu: r-enhancedvolcano: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-enhancedvolcano)[native-inputs]: Add r-biocgenerics. Change-Id: I416f27e0e0f2e0c237e29f9ca6b5edeccebbec76
2024-12-03gnu: r-biocset: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocset)[native-inputs]: Add r-gseabase and r-org-hs-eg-db. [arguments]: Add phase 'delete-bad-tests. Change-Id: I062af0403952e209b07488afa5b939bee60cadc0
2024-12-03gnu: r-graphite: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-graphite)[native-inputs]: Add r-checkmate. [arguments]: Disable tests. Change-Id: Ia69467f2c1516ff3510a3e7ae422f9d031fecc1f
2024-12-03gnu: r-gseabase: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gseabase)[native-inputs]: Add r-go-db, r-hgu95av2, r-hgu95av2-db, r-org-hs-eg-db, and r-runit. Change-Id: I302caa7aa57487009272a3c361bd864a474afcf2
2024-12-03gnu: Add r-hgu95av2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hgu95av2): New variable. Change-Id: Ibbadbfd247755c54e56cc22ec59172c4da098bdf
2024-12-03gnu: r-riboseqr: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-riboseqr)[native-inputs]: Add r-biocstyle. Change-Id: I969eb0cea1051578d785a04adb5fd7770b18ab62
2024-12-03gnu: r-biocviews: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocviews)[arguments]: Disable tests. Change-Id: Ic66fd71421b041098da31a38d7101b1bf013110a
2024-12-03gnu: r-anf: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-anf)[arguments]: Disable tests. Change-Id: Id30bf651b086860224d2d52cb59d50221311736b
2024-12-03gnu: r-flowcore: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowcore)[arguments]: Disable tests. Change-Id: If8c97ed20a782357cc2c01e2bdd361d59419c260
2024-12-03gnu: r-bumphunter: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bumphunter)[native-inputs]: Add r-doparallel, r-runit, and r-txdb-hsapiens-ucsc-hg19-knowngene. [arguments]: Add phase 'delete-bad-tests. Change-Id: I86c3515ad5ad124742b244c085f0084342680168
2024-12-03gnu: r-batchelor: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-batchelor)[native-inputs]: Add r-bluster and r-scran. [arguments]: Add phase 'delete-bad-tests. Change-Id: Id23065c7b4b8209ddd058e1a68a88b2142df1bd1
2024-12-03gnu: r-singler: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-singler)[native-inputs]: Add r-scuttle and r-singlecellexperiment. Change-Id: I1629f5b206a0fbc8035b1d2a31315570933b9375
2024-12-03gnu: r-spatialexperiment: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-spatialexperiment)[native-inputs]: Add r-dropletutils. [arguments]: Add phase 'set-HOME. Change-Id: Ie08e76e22d6bf0410da2f590ac5f388f316e9111
2024-12-03gnu: r-asset: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-asset)[native-inputs]: Add r-biocgenerics. Change-Id: Iecfe6093665033d41b43d0ead6fa9d3f3fd54d81
2024-12-03gnu: r-savr: Disable vignettes.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-savr)[native-inputs]: Add r-testthat. [arguments]: Disable vignettes. Change-Id: If5a5928d3f7fde5d3360184b229894d92b715d03
2024-12-03gnu: r-regioner: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner)[native-inputs]: Add r-biocmanager. [arguments]: Add phase 'delete-bad-tests. Change-Id: I452297d9b7c776624e54bec376ed14efe4521d55
2024-12-03gnu: r-biotmle: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biotmle)[native-inputs]: Add r-biotmledata. [arguments]: Disable tests. Change-Id: Ia854a6278055a2617db62cbe360b8e108e5584c7
2024-12-03gnu: Add r-biotmledata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biotmledata): New variable. Change-Id: If0793889ddf09b31333c8331cc5ad87f72c16ac2
2024-12-03gnu: r-qdnaseq: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-qdnaseq)[native-inputs]: Add r-biocstyle. Change-Id: I6a22fb4208122c5f1a6c50421129722e5b98e11d
2024-12-03gnu: r-motifmatchr: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-motifmatchr)[native-inputs]: Add r-bsgenome-hsapiens-ucsc-hg19. Change-Id: I90b4c258c9685047287e1e5eedbdbe9b9ce26f8f
2024-12-03gnu: r-glmgampoi: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-glmgampoi)[native-inputs]: Add r-biocparallel, r-limma, r-mass, r-scran, and r-zoo. Change-Id: I5019e1b6efdad8c98245bef7512265b2141f78c9
2024-12-03gnu: r-activedriverwgs: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activedriverwgs)[native-inputs]: Add r-testthat. Change-Id: Ieb45284d6a240bc88081da0018a7163a66e78b22
2024-12-03gnu: r-sictools: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sictools)[arguments]: Disable tests. Change-Id: Id692ec7c7d5dcb17628fe818b7d116e9261ad60f
2024-12-03gnu: r-bamsignals: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bamsignals)[native-inputs]: Add r-rsamtools. Change-Id: Ifdca0e50c90349ba4179f80ea1fed91cd9ba37db
2024-12-03gnu: r-biocthis: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocthis)[arguments]: Disable tests. Change-Id: Icd1a846013a36c3c8555bdcb2d6ba7dce6a8e09c
2024-12-03gnu: r-spectra: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-spectra)[arguments]: Disable tests. [native-inputs]: Add missing inputs r-mzr and r-patrick. Change-Id: I7d9dca3c1f17c0a57d7b6cc7479e08ea5bb11843
2024-12-03gnu: r-powertcr: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-powertcr)[native-inputs]: Add r-biocgenerics. Change-Id: Ieb0f7f2bd4362a9f1d6c4a0b9b937e8be81b7323
2024-12-03gnu: r-mzr: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mzr)[native-inputs]: Add r-codetools, r-msdata, r-mzid, and r-xml. Change-Id: Iaeb8286a19ddb1bc750710a0e5d5a5cee59b3901
2024-12-03gnu: r-sanssouci: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sanssouci)[native-inputs]: Add r-ggplot2 and r-testthat. [arguments]: Add phase 'delete-bad-tests. Change-Id: I902b4e4a2163f5ed9cf07d186dfe80068a8ef4a5
2024-12-03gnu: r-birewire: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-birewire)[native-inputs]: Add r-biocgenerics. Change-Id: I3d07db1bd5cafd88f05afe67fc7bf43e07946365
2024-12-03gnu: r-variancepartition: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition)[native-inputs]: Add r-edger and r-rfast. Change-Id: I5b9bd4e378d0e7dbd5bc3efc67b96bd1beb563b1
2024-12-03gnu: r-annotationhub: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationhub)[arguments]: Disable tests. Change-Id: I00a9778eb5d8cd031b956c583f12f42921fec4e2
2024-12-03gnu: r-treeio: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-treeio)[native-inputs]: Add r-igraph and r-xml2. [arguments]: Add phase 'delete-bad-tests. Change-Id: I0c5e8ef566acbc8593c6c27a6cc7776778937876
2024-12-03gnu: r-gofuncr: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gofuncr)[native-inputs]: Add r-homo-sapiens. Change-Id: I66d6e9985fc420c93eaf77afa348b7bbd29381c7
2024-12-03gnu: r-organismdbi: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-organismdbi)[arguments]: Disable tests. Change-Id: I1a669db2ffc8f9e5bf00666bdfbc53a060508dc6
2024-12-03gnu: r-txdbmaker: Add test inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-txdbmaker)[native-inputs]: Add r-rmariadb. [arguments]: Add phase 'delete-bad-tests. Change-Id: I22fe422410a41998e4fa3552cfaa1dba3e245c10
2024-12-03gnu: r-biomart: Add test inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomart)[native-inputs]: Add r-httptest2 and r-mockery. [arguments]: Add phase 'delete-bad-tests. Change-Id: I07aacb1f73a8afd49a1645da8c1bf2d22dde7873
2024-12-03gnu: r-metagenomeseq: Add test inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-metagenomeseq)[native-inputs]: Add r-testthat. [arguments]: Add phase 'delete-bad-tests. Change-Id: I702d02695fe0b078bd2b97b958a0bbde73d0c2d5
2024-12-03gnu: r-ioniser: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ioniser)[native-inputs]: Add r-minionsummarydata. Change-Id: Ie478db21c33c6d279937678b8103cca5df228a09
2024-12-03gnu: Add r-minionsummarydata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-minionsummarydata): New variable. Change-Id: I61318a1338bbff117e38d3ce5963dd061e5175a9
2024-12-03gnu: r-glimma: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-glimma)[native-inputs]: Add r-pryr. Change-Id: I9109cc636e758df436aaae38c3b2bd735b1e4cc0
2024-12-03gnu: r-systempiper: Add missing inputs and disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-systempiper)[native-inputs]: Add r-systempiperdata. [arguments]: Disable tests. Change-Id: Ic071bbcb53ef9fb96385fbbdb5725ed2a4490db7
2024-12-03gnu: r-roar: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-roar)[native-inputs]: Add r-rnaseqdata-hnrnpc-bam-chr14. Change-Id: Ic5fa181d52e87ba7039e0000f5610eb46150bbfc
2024-12-03gnu: Add r-systempiperdata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-systempiperdata): New variable. Change-Id: I125e8003073ffc5fa7f20d3efa0f3ead71eaafe3
2024-12-03gnu: r-sgseq: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sgseq)[native-inputs]: Add r-bsgenome-hsapiens-ucsc-hg19. [arguments]: Add phase 'delete-bad-tests. Change-Id: I5ff9e2af754700e5ba70ad7bdd1be5ec952946a3
generated by cgit v1.2.3 (git 2.45.2) at 2025-04-06 22:29:29 +0000