diff options
| author | Ricardo Wurmus <[email protected]> | 2024-11-26 12:20:05 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <[email protected]> | 2024-12-03 16:59:43 +0100 |
| commit | 0af2fc1f0653553f304cb6421437913243b6ad0f (patch) | |
| tree | 9d959c4a2ef772dc294b977e77374252fbfa5ca5 /gnu/packages/bioconductor.scm | |
| parent | 1cf17225b05435dc37e5de08e4070252c8eca608 (diff) | |
gnu: r-biomart: Add test inputs.
* gnu/packages/bioconductor.scm (r-biomart)[native-inputs]: Add r-httptest2
and r-mockery.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I07aacb1f73a8afd49a1645da8c1bf2d22dde7873
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 16 |
1 files changed, 15 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1250edd8c4..8fae9aeb52 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7611,6 +7611,20 @@ on Bioconductor or which replace R functions.") (properties `((upstream-name . "biomaRt"))) (build-system r-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'delete-bad-tests + (lambda _ + ;; These tests attempt to download files. + (for-each delete-file + '("tests/testthat/test_ensemblFunctions.R" + "tests/testthat/test_ensemblGenomes.R" + "tests/testthat/test_getBM.R" + "tests/testthat/test_z_cache.R" + ;; This produces unexpected warnings. + "tests/testthat/test_ensembl_ssl_settings.R"))))))) (propagated-inputs (list r-annotationdbi r-biocfilecache @@ -7622,7 +7636,7 @@ on Bioconductor or which replace R functions.") r-stringr r-xml2)) (native-inputs - (list r-knitr r-testthat)) + (list r-httptest2 r-knitr r-mockery r-testthat)) (home-page "https://bioconductor.org/packages/biomaRt") (synopsis "Interface to BioMart databases") (description |