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path: root/gnu/packages/python-science.scm
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2025-03-03gnu: python-trimesh: Skip tests requiring network.Lars Bilke
* gnu/packages/python-science (python-trimesh)[arguments]<#:test-flags>: Skip network tests. Change-Id: I82389eca3baf14322875daa9aa33f74a1066c8e3 Signed-off-by: Guillaume Le Vaillant <[email protected]>
2025-03-03gnu: python-pandas: Skip some tests on 32bit systems.Efraim Flashner
* gnu/packages/python-science.scm (python-pandas)[arguments]: Adjust the test-flags when not building on a 64bit system to skip some incompatible tests. Change-Id: Ic581cc6bf4ade2d92425c38df10bc45beaf4009e
2025-02-28gnu: Add python-mpsplines.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-mpsplines): New variable. Change-Id: I1ae05c5bff783f7716e578bfc01699a10d13c337
2025-02-28gnu: Add python-cmocean.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-cmocean): New variable. Change-Id: I8b304c0280832f202714df278960493cbd3b12df
2025-02-28gnu: python-mpl-scatter-density: Update to 0.8.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-mpl-scatter-density): Update to 0.8. [source] <uri>: Adjust it as PyPI archive name has been changed upstream. Change-Id: Ic049ea153503cfa92c5d19b272afb00e64f7a28e
2025-02-27gnu: python-vaex-core: Update to 4.17.1.Ricardo Wurmus
* gnu/packages/python-science.scm (python-vaex-core): Update to 4.17.1. [arguments]: Remove phase 'patch-for-pydantic. [native-inputs]: Use python-cython-3 instead of python-cython. Change-Id: I5fdb8f19b5d334058c5ece215a288ac4abd7647f
2025-02-27gnu: python-pandera: Use Pydantic 2.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandera)[propagated-inputs]: Replace python-pydantic with python-pydantic-2. [arguments]: Disable one test. Change-Id: Ie222a484f4d8a540ffdf6db6da09e600723169d7
2025-02-27gnu: python-vaex-core: Use pyproject-build-system and Pydantic 2.Ricardo Wurmus
* gnu/packages/python-science.scm (python-vaex-core)[build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase; add phase 'patch-for-pydantic. [propagated-inputs]: Replace python-pydantic with python-pydantic-2; add python-pydantic-settings. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I0e3d4d30940f55e234a5971431dc1c3fec2abce3
2025-02-25gnu: python-pyvista: Update to 0.44.2.reza
* gnu/packages/python-science.scm (python-pyvista): Update to 0.44.2 [build-system]: Change to pyproject-build-system. [native-inputs]: Add native-inputs for testing. [modify-phases]: Enable sanity-check and check phase, disable failing tests and vtk dependency check and redirect $HOME variable. Change-Id: I4293e99be12d096e639e47b8066116ba519909a8 Signed-off-by: Christopher Baines <[email protected]>
2025-02-19gnu: Fix some misspellings.Efraim Flashner
Change-Id: I316652aff7418af4b8e83bea24638b1513f8aa97
2025-02-15gnu: python-plotnine: Update to 0.14.5.Ricardo Wurmus
* gnu/packages/python-science.scm (python-plotnine): Update to 0.14.5. [arguments]: Disable more image tests; add phase 'pretend-version. Change-Id: I7ba5cc47ff93187785b0d8c2f5e294e0d08c9f54
2025-02-11gnu: Add python-imagehash.Vinicius Monego
* gnu/packages/python-science.scm (python-imagehash): New variable. Co-authored-by: Sharlatan Hellseher <[email protected]> Signed-off-by: Sharlatan Hellseher <[email protected]> Change-Id: Ie773b4504d97ac2678e0776a27eb661d909fed47
2025-02-10gnu: Add python-nibabel.Vinicius Monego
* gnu/packages/python-science.scm (python-nibabel): New variable. Change-Id: I27d3841def6f360ae3996aacb787142bcfa92291 Signed-off-by: Andreas Enge <[email protected]>
2025-02-07gnu: python-pandas-1: Disable failing test.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas-1):[arguments]: Disable failing test_nat_comparisons. Change-Id: Ifdd3cfb244e03b9412c7caa458557ce3fd30e38a
2025-01-28gnu: python-unyt: Update to 3.0.3, fix build.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-unyt): Update to 3.0.3. Fix build. Change-Id: Ic894ddfa982b9d41b40fc7e18149de099dd705f6
2025-01-28gnu: Add python-scikit-misc.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-misc): New variable. Change-Id: I8fb3c46fe8a927e5d2fbd3222a423330e771379e
2025-01-27gnu: python-deepdish: Fix indentation.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-deepdish): Fix indentation. Change-Id: Idf8a0b5cdb9e371cb5d1f5f51f993da6209342d5
2025-01-27gnu: python-deepdish: Update to 0.3.7-0.3f2dff7, fix build.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-deepdish): Update to 0.3.7-0.3f2dff7. [source]: Swap to git checkout containing fixes for NumPy. [native-inputs]: Add python-pytest. Change-Id: Icbc8c0895bcac0bdfede65ac7b6006186c684a70
2025-01-27gnu: python-pods: Update to 0.1.17.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pods): Update to 0.1.17. [native-inputs]: Remove python-setuptools and python-wheel; add python-poetry-core. Change-Id: I68db152ec47c54ffb92528863e9faedec11440ac
2025-01-27gnu: python-paramz: Add missing inputs, fix build.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-paramz): [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I3d33d04f523a214995e82d03d5bb1ce669962398
2025-01-27gnu: python-pods: Fix build.Felix Gruber
* gnu/packages/python-science.scm (python-pods): Fix build. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I758d7a45e8e7baf436abe3c0b2ad92241c0bab48
2025-01-20gnu: python-libneuroml: Update to 0.6.5.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-libneuroml): Update to 0.6.5. Fix build. [propagated-inputs]: Remove python-six; add python-natsort and python-networkx. Change-Id: I750f90cebdeba46286239b18569300a2e4ce8c80
2025-01-20gnu: python-modin: Update to 0.32.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-modin): Update to 0.32.0. [build-system]: Use pyproject-build-system. [arguments]: Remove phase 'make-files-writable; disable one test; update custom 'check phase. [propagated-inputs]: Add python-s3fs. [native-inputs]: Add python-boto3 and python-wheel. Change-Id: I1d74013902e3387945586192b88c1e4fd8256733
2025-01-20gnu: python-pynetdicom: Update to 2.1.1.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pynetdicom): Update to 2.1.1. [native-inputs]: Add python-codespell, python-coverage, python-poetry-core, python-pytest-cov, python-pytest-xdist, python-sphinx, and python-sphinx-rtd-theme; remove python-pyfakefs, python-setuptools, and python-wheel. [propagated-inputs]: Add python-mypy, python-numpydoc, and python-pyfakefs. Change-Id: Ic0089df89cd34b50c31370581db7a6e88884199c
2025-01-20gnu: python-spin: Fix build.宋文武
* gnu/packages/python-science.scm (python-spin)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ieeaa5f7186e51a16022910da89704e8cc282d935
2025-01-20gnu: python-xarray-schema: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray-schema)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: I7cecc17468f94c9987ed349b0dd0d319e175e399
2025-01-20gnu: python-xarray-datatree: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray-datatree)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: I5c2d5ec44b13c82e7400687accccf81427aa0da9
2025-01-20gnu: python-fastcluster: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-fastcluster)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: I2fa034054f5183e04c2f1e673f841f07799a7b94
2025-01-20gnu: python-cvxpy: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-cvxpy)[native-inputs]: Add python-wheel. Change-Id: I66f4f504a0a4101abc845b7b7d0a0fccbd6b91b9
2025-01-20gnu: python-scikit-survival: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-survival)[native-inputs]: Add python-setuptools. Change-Id: I52e98c787cec226590f21c98e4287a41fb41f3d3
2025-01-20gnu: python-qdldl: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-qdldl)[native-inputs]: Add python-wheel. Change-Id: I6bca560b20a9c259eae95c09edcf10ead685ec21
2025-01-20gnu: python-osqp: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-osqp)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ief43d97442a98935dea1499c67e022e9beb5359e
2025-01-20gnu: python-scikit-fuzzy: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-fuzzy)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Idbaf5fa622b3584f8fd348ec0783605936d3bf41
2025-01-20gnu: python-scikit-allel: Update to 1.3.13.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-allel): Update to 1.3.13. [propagated-inputs]: Remove python-click. [native-inputs]: Remove python-scipy. Change-Id: I3c29bd3d9f87d0866da747c344740bad71cae1c3
2025-01-20gnu: python-scikit-opt: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-opt)[native-inputs]: Add python-setuptools. Change-Id: Id14e3964257e250c1ba597c6d8fe1a0410fa475f
2025-01-20gnu: python-traittypes: Fix tests.Ricardo Wurmus
* gnu/packages/python-science.scm (python-traittypes)[arguments]: Add phase 'numpy-compatibility. Change-Id: I41d55d65d0dafd44029de38b3044d9fad378db50
2025-01-20gnu: python-pandas-2: Restrict number of test processes.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Restrict to at most four processes. Change-Id: I8ee4cb29ad922e9b853515b5f0e8f8aabca52c92
2025-01-20gnu: python-pandas-2: Remove X.Ricardo Wurmus
These tests are not run anyway, so there is no need to launch an X server. * gnu/packages/python-science.scm (python-pandas-2)[arguments]: Rename 'prepare-x phase to 'pre-check. [native-inputs]: Remove xorg-server-for-tests. Change-Id: Ib85883360397d2715a1893b74435d96a1d119f9e
2025-01-20gnu: python-pythran: Update to 0.17.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pythran): Update to 0.17.0. [build-system]: Use pyproject-build-system. [source]: Remove obsolete snippet. [arguments]: Remove phase 'do-not-install-third-parties and custom 'check phase; use #:test-flags and add 'pre-check phase. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I49ebdd21cfb0668dd84f0d12c460a86ed694c7d6
2025-01-20gnu: python-scikit-build-core: Update to 0.10.7.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-build-core): Update to 0.10.7. [native-inputs]: Add python-pytest-subprocess. Change-Id: I3da5a9e5d59900335deee2d4a5a1c80d1dd7c5ab
2025-01-20gnu: python-qdldl: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-qdldl)[native-inputs]: Add python-setuptools. Change-Id: I5f4c5b8f368da21da1f7d5c5cedd7a806dbdd709
2025-01-01gnu: python-upsetplot: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-upsetplot)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ibddb6f183345af29dfce218145c7c8c83aa9c244
2024-12-21gnu: python-mpl-scatter-density: Fix buld.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-mpl-scatter-density): [native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ica320293019ae3e88e2b0654e356bc4d1be50626
2024-12-21gnu: python-supersmoother: Fix buildSharlatan Hellseher
* gnu/packages/python-science.scm (python-supersmoother): [native-inputs]: Add python-pytest, python-setuptools, and python-wheel. Change-Id: I33f151e74d54b6e0647b3cfae73c063522c35ea3
2024-12-21gnu: python-trimesh: Update to 4.5.3.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-trimesh): Update to 4.5.3, fix build. [arguments] <phases>: Remove 'fix-build, as resolved upstream. Delete 'sanity-check. Change-Id: I9320912764506a8c0d0bd7f300dca98b32ce4333
2024-12-19gnu: Add pyre.Maxim Cournoyer
* gnu/packages/python-science.scm (pyre): New variable. Change-Id: I4a26d7a83f24210104cb0ab50b5392ab97d9bfc4
2024-12-17gnu: python-pandas-stubs: Update to 2.2.3.241126.Maxim Cournoyer
* gnu/packages/python-science.scm (python-pandas-stubs): Update to 2.2.3.241126. [arguments]: Ignore tests/test_io.py in #:test-flags. [native-inputs]: Replace python-sqlalchemy with python-sqlalchemy-2. Change-Id: If27b3a5b687ca230a209e8a8087a89802414912e
2024-12-17gnu: Add python-ndindex.Maxim Cournoyer
Adapted from <https://raw.githubusercontent.com/Blosc/python-blosc2/refs/heads/main/.guix/modules/python-blosc2-package.scm>. * gnu/packages/python-science.scm (python-ndindex): New variable. Co-authored-by: Ivan Vilata i Balaguer <[email protected]> Change-Id: I38fbcbd8859c2ddbfdd39e8d84a63b20deef75c4
2024-12-15gnu: python-xarray: Disable bad tests.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray)[arguments]: Disable two tests. Change-Id: Ia9799a5bd247907ee875925431cd0fe2714f51b3
2024-12-13gnu: Remove python-typeguard-4.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-typeguard-4): Delete variable. * gnu/packages/python-check.scm (python-icontract) [native-inputs]: Remove python-typeguard-4; add python-typeguard. * gnu/packages/python-science.scm (python-pandera) [propagated-inputs]: Remove python-typeguard-4; add python-typeguard. Change-Id: Ie20deee06629452c804fa6f62b1bd1f67038bc86
generated by cgit v1.2.3 (git 2.45.2) at 2025-03-19 06:57:30 +0000