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2025-01-20gnu: python-matrix-nio: Use test-flags.Ricardo Wurmus
* gnu/packages/matrix.scm (python-matrix-nio)[arguments]: Remove custom 'check phase; disable some tests using #:test-flags. Change-Id: Ib7c826b1746c418f8c917581695a63a486c4acd7
2025-01-20gnu: python-scikit-opt: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-opt)[native-inputs]: Add python-setuptools. Change-Id: Id14e3964257e250c1ba597c6d8fe1a0410fa475f
2025-01-20gnu: python-tables: Fix reference to library.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-tables)[arguments]: Add phase 'fix-reference-to-blosc2. Change-Id: If1e5f9ccf8e6e6c37f9c6521a98b208e0fc1fd01
2025-01-20gnu: python-openapi-spec-validator: Restore sanity check.Ricardo Wurmus
* gnu/packages/python-web.scm (python-openapi-spec-validator)[arguments]: Restore 'sanity-check phase. Change-Id: I3fc22ef74a55a43f4ec2b32caeb630bc01d815d9
2025-01-20gnu: python-openapi-core: Update to 0.19.4.Ricardo Wurmus
* gnu/packages/python-web.scm (python-openapi-core): Update to 0.19.4. [arguments]: Disable only one test. [native-inputs]: Remove python-pypa-build. Change-Id: I0660bcd129fb182dd7559c04fc65513ff846eedc
2025-01-20gnu: python-openapi-schema-validator: Relax requirements.Ricardo Wurmus
* gnu/packages/python-web.scm (python-openapi-schema-validator)[arguments]: Add phase 'relax-requirements. Change-Id: I57dcc2030bca914af730922f9c511fab286f9d7d
2025-01-20gnu: python-falcon: Update to 4.0.2.Ricardo Wurmus
* gnu/packages/python-web.scm (python-falcon): Update to 4.0.2. [source]: Remove snippet. [arguments]: Disable slow tests; rename 'set-HOME to 'pre-check. [native-inputs]: Replace python-cython with python-cython-3. Change-Id: I10d3b412b8abc3bfb2271adba7fb1597fdb24098
2025-01-20gnu: python-testtools: Update to 2.7.2.Ricardo Wurmus
* gnu/packages/check.scm (python-testtools-bootstrap): Update to 2.7.2. [propagated-inputs]: Drop labels. [native-inputs]: Add python-hatchling, python-hatch-vcs, and python-setuptools. [build-system]: Use pyproject-build-system. (python-testtools): Update to 2.7.2. [arguments]: Disable some tests. [native-inputs]: Add python-hatch-vcs, python-hatchling, python-twisted, and python-setuptools. Change-Id: I7c065b490229ecf4c11257c709b439521ef14222
2025-01-20gnu: python-ipydatawidgets: Disable more tests and add inputs.Ricardo Wurmus
* gnu/packages/jupyter.scm (python-ipydatawidgets)[arguments]: Disable widget tests. [propagated-inputs]: Add python-ipython-genutils; remove python-six. Change-Id: I4e56f11d78880f1d99f59de3d53900f7aefb14ed
2025-01-20gnu: python-dnspython: Disable ECDSA tests.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-dnspython)[arguments]: Disable four tests. Change-Id: Ia8dad056dca0842cd709180c0819d595b171b18b
2025-01-20gnu: python-trio-typing: Update to 0.10.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-trio-typing): Update to 0.10.0. [native-inputs]: Remove python-attrs. [propagated-inputs]: Remove python-mypy; add python-async-generator, python-importlib-metadata, and python-packaging. Change-Id: Ie8171ed0bdacb15f083c1c430162a8b4f28965f9
2025-01-20gnu: python-trio: Update to 0.28.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-trio): Update to 0.28.0. [arguments]: Add phase 'ignore-deprecations. [native-inputs]: Remove python-astor, python-jedi, python-isort, and python-pytest-asyncio. [propagated-inputs]: Remove python-async-generator. Change-Id: I435fe322324bc5e58130d072db7f032c3a67c67e
2025-01-20gnu: python-pyopenssl: Update to 24.3.0.Ricardo Wurmus
* gnu/packages/python-crypto.scm (python-pyopenssl): Update to 24.3.0. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-wheel. Change-Id: I504a80c300a94698771734734bed29c07cb13bd5
2025-01-20gnu: python-cryptography: Update to 44.0.0.Ricardo Wurmus
* gnu/packages/python-crypto.scm (python-cryptography): Update to 44.0.0. [arguments]<cargo-inputs>: Replace rust-asn1-0.16 with rust-asn1-0.20; replace rust-pyo3-0.22 with rust-pyo3-0.23. [source]: Remove obsolete part of snippet. [native-inputs]: Remove python-iso8601 and python-pytest-subtests; add python-cffi, python-click, python-mypy, python-pytest-cov, python-pytest-randomly, and python-pytest-xdist. Change-Id: I44dab9afec879d45d4612cb15e582ce1a62635ad
2025-01-20gnu: python-cryptography-vectors: Update to 44.0.0.Ricardo Wurmus
* gnu/packages/python-crypto.scm (python-cryptography-vectors): Update to 44.0.0. [native-inputs]: Remove python-setuptools and python-wheel. Change-Id: I9d73e0ee5ef9af14c5a7ce5900d0814fea707f87
2025-01-20gnu: python-traittypes: Fix tests.Ricardo Wurmus
* gnu/packages/python-science.scm (python-traittypes)[arguments]: Add phase 'numpy-compatibility. Change-Id: I41d55d65d0dafd44029de38b3044d9fad378db50
2025-01-20gnu: cwltool: Patch tox.ini.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (cwltool)[arguments]: Rename 'modify-tests to 'patch-tests; add patch of tox.ini. Change-Id: I2c90a8803e7eb1153cb4c7cc5b683875627c57f1
2025-01-20gnu: cwltool: Use test-flags.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (cwltool)[arguments]: Use #:test-flags instead of deleting and patching tests in 'modify-tests phase. Change-Id: I0e4f16d48fba23e4197b69bf1c3923828f178cd0
2025-01-20gnu: python-prov: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-prov): Update to 2.0.1. [build-system]: Use pyproject-build-system. [arguments]: Remove 'fix-rdflib-6-compatibility phase; add custom 'check phase. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ia5e0ed1ee6e9476f317b345234018f2391cc3e98
2025-01-20gnu: python-rdflib-6: Accept newer isodate.Ricardo Wurmus
* gnu/packages/rdf.scm (python-rdflib-6)[arguments]: Add phase 'compatibility. Change-Id: I4b4c880b169c6606707c1e973af9488c07d18992
2025-01-20gnu: python-rdflib-6: Disable one test.Ricardo Wurmus
* gnu/packages/rdf.scm (python-rdflib-6)[arguments]: Disable one additional test. Change-Id: Ifcfe1b11d09299e219499ea77f792ca41aa02d9c
2025-01-20gnu: python-cwl-utils: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-cwl-utils)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: I803a68c04923c96f793d508c23bb08069524bc63
2025-01-20gnu: python-cwl-upgrader: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-cwl-upgrader)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: I81531d588e6deb8a01c59f2a824b815e8f95e0f0
2025-01-20gnu: python-schema-salad: Update to 8.8.20241206093842.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-schema-salad): Update to 8.8.20241206093842. [arguments]: Patch tox.ini. [propagated-inputs]: Remove python-importlib-resources, python-setuptools, and python-typing-extensions. [native-inputs]: Add python-cachecontrol, python-mypy, python-setuptools, python-setuptools-scm, python-types-dataclasses, python-types-requests, and python-types-setuptools. Change-Id: I22ca7ad772078192117a1139adca410b53844008
2025-01-20gnu: python-isodate: Update to 0.7.2.Ricardo Wurmus
* gnu/packages/time.scm (python-isodate): Update to 0.7.2. [build-system]: Use pyproject-build-system. [native-inputs]: Remove python-six; add python-pytest, python-setuptools, python-setuptools-scm, and python-wheel. Change-Id: I5ba64eb433e39c0bbb0360273f822d95ea7c63d3
2025-01-20gnu: python-cachecontrol: Update to 0.14.1.Ricardo Wurmus
* gnu/packages/python-web.scm (python-cachecontrol): Update to 0.14.1. [build-system]: Use pyproject-build-system. [propagated-inputs]: Add python-filelock. [native-inputs]: Add python-flit-core. Change-Id: I61bc38aafe04cf7f11394a654cf28181d39ce355
2025-01-20gnu: python-rdflib-6: Update to 6.3.2.Ricardo Wurmus
* gnu/packages/rdf.scm (python-rdflib-6): Update to 6.3.2. [build-system]: Use pyproject-build-system. [arguments]: Use #:test-flags instead of a custom build phase; update list of disabled tests. [native-inputs]: Add python-poetry-core and python-pytest-cov. Change-Id: I0dd4ecebdf3ef04562c3a3efb37614bf5eec16f5
2025-01-20gnu: fava: Update to 1.27.Sergey Trofimov
* gnu/packages/finance.scm (fava): Update to 1.27. [arguments] <phases>: Remove 'relax-requirements, and 'set-home. [native-inputs]: Remove python-chardet, python-dateutil, and python-setuptootls-scm. Add python-babel, python-mypy, python-pytest-cov, python-setuptootls, python-twine, python-types-setuptootls, python-types-simplejson, and python-wheel. Signed-off-by: Sharlatan Hellseher <[email protected]> Change-Id: Iee27197ece9685c500afe0dedb8ba33e02eb1ea1
2025-01-20gnu: beancount: Fix build.Sergey Trofimov
* gnu/packages/finance.scm (beancount) [native-inputs]: Add python-wheel and python-setuptools. Signed-off-by: Sharlatan Hellseher <[email protected]>
2025-01-20gnu: Add python-types-simplejson.Sergey Trofimov
* gnu/packages/python-xyz.scm (python-types-simplejson): New variable. Signed-off-by: Sharlatan Hellseher <[email protected]>
2025-01-20gnu: python-pdfminer-six: Update to 20240706.Sergey Trofimov
* gnu/packages/python-xyz.scm (python-pdfminer-six): Update to 20240706. Signed-off-by: Sharlatan Hellseher <[email protected]>
2025-01-20gnu: python-markdown2: Update to 2.5.2.Sergey Trofimov
* gnu/packages/python-xyz.scm (python-markdown2) [arguments] <phases>: Use default 'check. [native-inputs]: Add python-pytest, python-setuptools and python-wheel. Co-authored-by: Sharlatan Hellseher <[email protected]> Signed-off-by: Sharlatan Hellseher <[email protected]> Change-Id: Ic3df25863bbb37ec6282ec5dcbf815461663f8cd
2025-01-20gnu: python-flask-babel: Update to 4.0.0.Sergey Trofimov
* gnu/packages/python-web.scm (python-flask-babel): Update to 4.0.0. [source]: Fetch from git as PyPI release doesn't include tests. [build-system]: Switch to pyproject-build-system. [native-inputs]: Add python-poetry-core, python-pytest, python-pytest-cov, and python-pytest-mock. [propagated-inputs]: Sort. Signed-off-by: Sharlatan Hellseher <[email protected]> Change-Id: I253b88eac7bec8152dc97634059c2402624cb961
2025-01-20gnu: python-babel: Update to 2.16.0.Sergey Trofimov
* gnu/packages/python-xyz.scm (python-babel): Update to 2.16.0. [source]: Adjust uri as it's changed in PyPI archive. [build-system]: Swap to pyproject-build-system. [arguments] <phases>: Use default 'check. [native-inputs]: Add python-setuptools and python-wheel. Co-authored-by: Sharlatan Hellseher <[email protected]> Signed-off-by: Sharlatan Hellseher <[email protected]> Change-Id: I32b7c5613e7db2c676745d6621f04b52a1cdf0ba
2025-01-20gnu: pyscenic: Update to 0.12.1-1.eaf23eb.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pyscenic): Update to 0.12.1-1.eaf23eb. [arguments]: Update phase 'do-not-reference-deleted-modules. [propagated-inputs]: Add python-numexpr. [native-inputs]: Add python-wheel. Change-Id: Ib1b5a7d36a24b280160befe579057a241d69455d
2025-01-20gnu: python-pydantic-2: Update to 2.7.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pydantic-2): Update to 2.7.0. [arguments]: Update tests. [native-inputs]: Add tzdata-for-tests and python-jsonschema; remove python-faker. Change-Id: I8c85598f7603c58108602c6d67aa27314dea285e
2025-01-20gnu: python-pydantic-core: Update to 2.18.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pydantic-core): Update to 2.18.1. [arguments]: Replace rust-jiter-0.0.4 with rust-jiter-0.2, rust-strum-0.25 with rust-strum-0.26, rust-strum-macros-0.25 with rust-strum-macros-0.26, and rust-speedate-0.13 with rust-speedate-0.14. [native-inputs]: Add python-typing-extensions. Change-Id: I8686509f43667484847a72972aa2dd88dbce9343
2025-01-20gnu: Add rust-jiter-0.2.Ricardo Wurmus
* gnu/packages/crates-io.scm (rust-jiter-0.2): New variable. Change-Id: I7488999f653e126e7179728d732fb0054f949bd9
2025-01-20gnu: python-annotated-types: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-annotated-types): Update to 0.7.0. Change-Id: I610b144339841768b4ce861d5457cf4184f756a2
2025-01-20gnu: macs-3: Add missing input.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (macs-3)[native-inputs]: Add python-wheel. Change-Id: I22b8d8e144434ae537af7c113f4719392933e90c
2025-01-20gnu: python-httpretty: Enable tests.Ricardo Wurmus
* gnu/packages/web.scm (python-httpretty)[arguments]: Enable most tests. [native-inputs]: Add nss-certs-for-test, python-freezegun, python-httplib2, and python-pyparsing. Change-Id: I08d2c14a2e81559d41dc38f0eeb34c2d6c59125a
2025-01-20gnu: python-dulwich: Update to 0.21.7.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-dulwich): Update to 0.21.7. [build-system]: Use pyproject-build-system. [arguments]: Use #:test-flags; fix tests after 'unpack phase, split off 'pre-check phase. [native-inputs]: Replace git with git-minimal/pinned; add python-mypy, python-paramiko, python-pytest, python-requests, python-setuptools, and python-wheel; remove python-mock and python-gpg. Change-Id: I642de3e7707d545672066c6e59c9bcc2b5926097
2025-01-20gnu: python-geventhttpclient: Update to 2.3.3.Ricardo Wurmus
* gnu/packages/python-web.scm (python-geventhttpclient): Update to 2.3.3. [source]: Fetch from git repository; remove snippet. [build-system]: Use pyproject-build-system. [arguments]: Use #:test-flags; remove all custom phases. [native-inputs]: Add python-requests, python-setuptools, and python-wheel. [propagated-inputs]: Remove python-six. Change-Id: Ide97ffb7d656f58dd6693bd59ff82706bfea6caa
2025-01-20gnu: python-gevent: Propagate greenlet.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-gevent)[native-inputs]: Move python-greenlet from here... [propagated-inputs]: ...to here. [arguments]: Adjust. Change-Id: I5ebac1dd5e8c16b11e4855da78972c98f10cd285
2025-01-20gnu: python-eventlet: Update to 0.38.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-eventlet): Update to 0.38.2. [native-inputs]: Add python-pre-commit. [arguments]: Disable one more test. Change-Id: I73638abba7d5363538d7c65254e610e704fbe5d0
2025-01-20gnu: python-gevent: Update to 24.11.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-gevent): Update to 24.11.1. [build-system]: Use pyproject-build-system. [arguments]: Use #:test-flags; enable more tests; rename 'add-greenlet-on-C_INCLUDE_PATH to 'augment-C_INCLUDE_PATH. [propagated-inputs]: Remove python-greenlet. [native-inputs]: Add python-cffi, python-coverage, python-greenlet, python-idna, python-requests, python-setuptools, and python-wheel. [inputs]: Add libuv. Change-Id: Idd09ca01caf2977783c5a05eac2817b5630df327
2025-01-20gnu: python-pandas-2: Restrict number of test processes.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Restrict to at most four processes. Change-Id: I8ee4cb29ad922e9b853515b5f0e8f8aabca52c92
2025-01-20gnu: python-pandas-2: Remove X.Ricardo Wurmus
These tests are not run anyway, so there is no need to launch an X server. * gnu/packages/python-science.scm (python-pandas-2)[arguments]: Rename 'prepare-x phase to 'pre-check. [native-inputs]: Remove xorg-server-for-tests. Change-Id: Ib85883360397d2715a1893b74435d96a1d119f9e
2025-01-20gnu: python-pythran: Update to 0.17.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pythran): Update to 0.17.0. [build-system]: Use pyproject-build-system. [source]: Remove obsolete snippet. [arguments]: Remove phase 'do-not-install-third-parties and custom 'check phase; use #:test-flags and add 'pre-check phase. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I49ebdd21cfb0668dd84f0d12c460a86ed694c7d6
2025-01-20gnu: python-beniget: Update to 0.4.2.post1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-beniget): Update to 0.4.2.post1. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I03c53e97f1bb4ae7c13a4af2c7e4434137f764d6