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2024-12-13gnu: python-pandas-2: Update to 2.2.3.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pandas-2): Update to 2.2.3. [arguments]<test-flags>: Ignore move failing test which require optional dependencies. [native-inputs]: Remove python-cython-0.29.35; add python-cython-3. Change-Id: I402627132c9f0771470d89dea986c92855ae4ced
2024-12-13gnu: Remove python-pytest-next.Sharlatan Hellseher
* gnu/packages/check.scm (python-pytest-next): Delete variable. * gnu/packages/python-science.scm (python-pandas-2) [native-inputs]: Remove python-pytest-next; add python-pytest. * gnu/packages/python-xyz.scm (python-hy) [native-inputs]: Remove python-pytest-next; add python-pytest. Change-Id: I57e14aa11c2e3cd1d8e8119f566b49fd902c7957
2024-12-13gnu: python-fast-histogram: Adjust inputs.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-fast-histogram) [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I53e2ce8019c421894e50138099539021a91f7c24
2024-12-13gnu: python-distributed: Adjust inputs.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-distributed) [native-inputs]: Add python-wheel. Change-Id: I9c8620c04f7ed75af6900b885b58937621af15f9
2024-12-13gnu: python-scikit-fem: Update to 10.0.2.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-scikit-fem): Update to 10.0.2. Improve style. [arguments]<test-flags>: Skip some failing tests. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I4efe9f0e93d315c7b979bf3160fa5a3a97ab2115
2024-12-13gnu: python-unyt: Adjust inputs.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-unyt): Shift the order of native and propagated inuts, add missing. [native-inputs]: Add python-setuptools-scm. Change-Id: Ibb1606be89743ac7d90fcafeaa75eae7ccfd756c
2024-12-13gnu: python-pandera: Adjust inputs.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pandera) [native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ic0a46a11f0410a5d4a29dce8416a9d3ff89f471f
2024-12-13gnu: build-system/pyproject: Add missing native-inputs.Nicolas Graves
* gnu/packages/bioinformatics.scm (python-ega-download-client) [native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/databases.scm (datasette)[native-inputs]: Add python-pip. * gnu/packages/django.scm (python-django-localflavor, python-django-contact-form)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/graphviz.scm (python-uqbar)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/jupyter.scm (python-jupyterlab-server)[native-inputs]: Add python-wheel. (python-nbstripout)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/machine-learning.scm (python-captum, python-linear-operator, python-gpytorch)[native-inputs]: Add python-setuptools. * gnu/packages/music.scm (abjad, abjad-ext-rmarkers, abjed-ext-nauert, python-mutagen)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/package-management.scm (python-conda-package-handling)[native-inputs]: Add python-setuptools and python-wheel. (conda)[native-inputs]: Add python-wheel. * gnu/packages/python-check.scm (python-pyinstrument, python-pytest-testmon, python-pytest-trio, python-nbval, python-pytest-toolbox)[native-inputs]: Add python-setuptools and python-wheel. (python-nptyping)[native-inputs]: Add python-setuptools. * gnu/packages/python-check.scm (python-dask-expr)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/python-web.scm (parfive, python-aioftp, python-hupper, python-sanic, python-mechanicalsoup, python-tinycss, python-aiostream, python-cbor2, gunicorn)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/python-xyz.scm (python-apprise, python-jaraco-classes, python-sparse, python-shtab, python-pyan3)[native-inputs]: Add python-setuptools. (python-jupytext, python-orderedmultidict, python-identify, python-nodeenv, python-cfgv, python-zarr, python-multipart, python-nbconvert, python-cram, python-immutables, python-numpydoc, python-cairosvg, python-unidecode, python-black, python-multidict, python-mpv-jsonipc, python-humanize, python-cmd2)[native-inputs]: Add python-setuptools and python-wheel. (python-partd, python-dask, python-zarr)[native-inputs]: Add python-wheel. (python-nbconvert)[propagated-inputs]: Add texlive-etoolbox. Remove duplicate textlive-jknapltx. (python-isort)[native-inputs]: Add python-pip. * gnu/packages/simulation.scm (python-fenics-dijitso)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/sphinx.scm (python-pydata-sphinx-theme, python-sphinx-autodoc-typehints)[native-inputs]: Add python-setuptools. * gnu/packages/syndication.scm (tuir)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/terminals.scm (python-halo)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/time.scm (python-arrow, python-dateutil) [native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/version-control.scm (pre-commit)[native-inputs]: Add python-setuptools and python-wheel. Remove input labels. * gnu/packages/virtualization.scm (python-qemu-qmp, python-transient)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/xorg.scm (python-xcffib)[native-inputs]: Add python-setuptools and python-wheel. Signed-off-by: Nicolas Goaziou <[email protected]> Change-Id: Id61cf8cdc47bd4c2871c0a9c8e9a5bfd51157df0
2024-12-13gnu: Add python-setuptools/python-wheel where necessary.Lars-Dominik Braun
Changes to pyproject-build-system require explicit dependency on setuptools/wheel. Change-Id: Icd7699fc1dc56e974ae7568f2ae916dbf876bea5
2024-12-13build-system/pyproject: Use python-sans-pip-wrapper as default-python.Lars-Dominik Braun
Also adds python-setuptools and python-wheel to relevant packages, either to native-inputs or to propagated inputs if the pkg_resources Python module is loaded at runtime. * guix/build-system/pyproject.scm (default-python): Default to python-sans-pip-wrapper. Change-Id: I2d986c2225114f54459dd6bb360913106e52cdf4
2024-12-10gnu: Fix synopsis in various python packages.Gabriel Wicki
* gnu/packages/python-compression.scm (python-inflate64): Fix synopsis. * gnu/packages/python-science.scm (python-xarray-dataclasses): Fix synopsis. * gnu/packages/python-web.scm (python-waybackpack): Fix synopsis. * gnu/packages/python-xyz.scm (python-mir-eval): Fix synopsis. (python-restructuredtext-lint): Fix synopsis. (python-pixelmatch): Fix synopsis. (python-google-pasta): Fix synopsis. (python-xmp-toolkit): Fix synopsis. * gnu/packages/bioinformatics.scm (python-mgatk): Fix synopsis. * gnu/packages/rpc.scm (python-grpc-stubs): Fix synopsis. * gnu/packages/simulation.scm (python-commonroad-io): Fix synopsis. Signed-off-by: Vagrant Cascadian <[email protected]>
2024-12-04gnu: packages/python-science: Update copyright header.Sharlatan Hellseher
* gnu/packages/python-science.scm: Update copyright header for Antero Mejr <[email protected]> . Change-Id: I4153d51d74f7de1629d5a7851346021b77e7352d
2024-12-04gnu: Add python-scikit-surprise.Antero Mejr
* gnu/packages/python-science.scm (python-scikit-surprise): New variable. Change-Id: I9b5e13f0c985f34bb0bd759e76ebd27221a340a4 Signed-off-by: Sharlatan Hellseher <[email protected]>
2024-11-18gnu: Add python-pyet.Rick Huijzer
* gnu/packages/python-science.scm (python-pyet): New variable. Change-Id: Ia2be23aeb83911aa93869f82cf0667da8af509c4 Signed-off-by: Sharlatan Hellseher <[email protected]>
2024-11-01gnu: python-scs: Adjust inputs.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-scs) [inputs]: Remove meson-python. [native-inputs]: Remove python-meson-python; add meson-python. Change-Id: I0122ecd0db405b134a6587c32592b59522e6320b
2024-10-30gnu: python-trimesh: Update to 4.1.8.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-trimesh): Update to 4.1.8. [arguments]<test-flags>: Refresh list of disabled tests. [propagated-inputs]: Add python-meshio, python-psutil, python-pycollada, python-pyglet, and python-scikit-image. [native-inputs]: Remove python-pytest-cov. [description]: Adjust fill alignment. Change-Id: I722311cbe883499c0eca99d0f30b0788e87598d3
2024-10-30gnu: Add python-pymcubes.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pymcubes): New variable. Change-Id: I47273d933824fb96d3c2c1950f0a2f89ce635c41
2024-10-02gnu: python-pynsee: Update to 0.1.8.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pynsee): Update to 0.1.8. [propagated-inputs]: Add python-openpyxl, python-platformdirs, python-pyarrow, and python-xlrd. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ibb9ec7b979b7e27d2c2a48e2bf27dfcddc79200d
2024-10-02gnu: Add python-pynsee.Nicolas Graves
* gnu/packages/python-science.scm (python-pynsee): New variable. Change-Id: I4e93d26ad4b6be238b0e4cce82ea77030caf6e02 Signed-off-by: Sharlatan Hellseher <[email protected]>
2024-09-02gnu: python-scikit-fuzzy: Enable tests.Vinicius Monego
* gnu/packages/python-science.scm (python-scikit-fuzzy)[arguments]: Remove #:tests? #f and add #:test-flags. [native-inputs]: Remove python-nose. Add python-pytest. Change-Id: I317d6ad2fdede1a3a4737c45118932e2ddc5ce46
2024-09-02gnu: python-scikit-fuzzy: Update to 0.5.0.Vinicius Monego
* gnu/packages/python-science.scm (python-scikit-fuzzy): Update to 0.5.0. [source]: Adjust URI. [build-system]: Move to pyproject-build-system. Change-Id: I5dbe3788c34767d4af0c1b526a3ce79f0f6d532f
2024-08-31gnu: python-clarabel: Fix build.宋文武
* gnu/packages/python-science.scm (python-clarabel)[arguments]: Don't refer to nonexistent 'prepare-python-module' phase. Change-Id: I002e6a5a5bf9a540c5d6e169a9ba59dc96f6b361
2024-08-31gnu: meson: Update to 1.1.1 and ungraft.Ludovic Courtès
* gnu/packages/build-tools.scm (meson): Update to 1.1.1. [replacement]: Remove. (meson/newer): Remove. (meson-python/newer): Remove. * gnu/packages/pdf.scm (capypdf)[arguments]: Remove #:meson. Change-Id: I77dd9203461e8dd635753ec742bd8046dd63e3f9 * gnu/packages/python-science.scm (python-pandas-2): Use regular meson-python. * gnu/packages/python-xyz.scm (python-contourpy): Same
2024-07-30gnu: Add python-mpl-scatter-density.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-mpl-scatter-density): New variable. Change-Id: Id4ea80b2c62642affbe1944e0c5126a1c53d16c3
2024-07-30gnu: python-fast-histogram: Adjust inputs.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-fast-histogram): Fix lint warnings and adjust inputs. [native-inputs]: Add python-setuptools-scm. Change-Id: Ic51660d7542114f2bb45be4720ab4d899633e56d
2024-07-05gnu: python-scikit-optimize: Update to 0.10.2.Vinicius Monego
* gnu/packages/python-science.scm (python-scikit-optimize): Update to 0.10.2. [source]: Switch to maintained repository. Remove compatibility patches and snippet. * gnu/packages/patches/python-scikit-optimize-1148.patch, gnu/packages/patches/python-scikit-optimize-1150.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them. Change-Id: I6c23c93d3c256b0b97166f80eaeab7f2c7282c5f
2024-06-30gnu: Add python-fast-histogram.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-fast-histogram): New variable. Change-Id: Ibecdd87db9c132052a8eca76c01108c4f6e624c4
2024-06-30gnu: Add python-corner.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-corner): New variable. Change-Id: I75c3a88ba4b729fb7c9a50dd85a00b22cdcaa828
2024-06-26gnu: Add python-spin.Vinicius Monego
* gnu/packages/python-science.scm (python-spin): New variable. Change-Id: I794845d559f3f4f3ab9cf98b0e4a4321b470f7f8 Signed-off-by: jgart <[email protected]>
2024-06-16gnu: Add python-formulaic.Ricardo Wurmus
* gnu/packages/python-science.scm (python-formulaic): New variable. Change-Id: Ib21bfdc3050c042abc7494501d7b0409be8ed3bb
2024-06-16gnu: Add python-scikit-survival.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-survival): New variable. Change-Id: I657f5d737280cac74f93f7f3d2b56a9a0a41588e
2024-05-30gnu: python-unyt: Fix version detection.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-unyt): Fix version detection. [native-inputs]: Add python-setuptools-scm. Change-Id: I96e7d2530b15299a39911bebf62b76a9191ea91b Signed-off-by: Andrew Tropin <[email protected]>
2024-05-26gnu: python-scikit-image: Disable test_ellipse_parameter_stability.Christopher Baines
As it's flaky, see https://github.com/scikit-image/scikit-image/issues/7061 * gnu/packages/python-science.scm (python-scikit-image)[arguments]: Add #:test-flags. Change-Id: Ic1fc301eb0fad5330c34780ce096c446c1076824
2024-05-22gnu: python-pandera: Update to 0.18.0, fix build.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pandera): Update to 0.18.0. [arguments] <#:test-flags>: Disable one more failing test. Change-Id: I4d3f59dae8d90ea0afbe9cc932fc6163def282c9
2024-05-11gnu: python-scikit-image: Update to 0.23.2.Vinicius Monego
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.23.2. Change-Id: Ief01a2aef5202dd859f9337a45105088d605509e
2024-05-05gnu: python-gpy: Update to 1.13.1.Ricardo Wurmus
* gnu/packages/python-science.scm (python-gpy): Update to 1.13.1. [source]: Remove snippet. [build-system]: Use pyproject-build-system. [arguments]: Remove phase 'remove-plotting-tests; add phase 'compatibility. [native-inputs]: Remove python-nose and python-climin; add python-pytest, python-matplotlib, and python-pods. Change-Id: I1ed95e3ad2e8444979fd2cf272d7f3104b1bf2ec
2024-05-05gnu: python-paramz: Update to 0.9.6.Ricardo Wurmus
* gnu/packages/python-science.scm (python-paramz): Update to 0.9.6. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-nose. Change-Id: I62a2f7ecf600f48da74f4d233e108360a583d5ca
2024-05-05gnu: python-pingouin: Update to 0.5.4.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.4. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase; add 'sklearn-compatibility phase; skip one test. Change-Id: I8d13f15558eadee0547f04bc4bb89a0fd0e0767b
2024-05-05gnu: python-plotnine: Fix version string.Ricardo Wurmus
* gnu/packages/python-science.scm (python-plotnine)[native-inputs]: Add python-setuptools-scm. Change-Id: I0fc2f3ad7edcdaaa5e3bf9774bc6840c8fbeb727
2024-05-05gnu: python-plotnine: Disable test because of harmless warning.Ricardo Wurmus
* gnu/packages/python-science.scm (python-plotnine)[arguments]: Disable test_save_method which prints an unexpected warning.. Change-Id: I28a20b85ee549311bed534efbf801db930419ca9
2024-05-05gnu: python-dask: Propagate python-dask-expr.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-dask/bootstrap): New variable. (python-dask)[propagated-inputs]: Add python-dask-expr. * gnu/packages/python-science.scm (python-dask-expr)[propagated-inputs]: Remove python-dask. [native-inputs]: Add python-dask/bootstrap. Change-Id: I1196641425421c7dde94c6fea8d573e78db9c402
2024-05-05gnu: python-pandas-stubs: Accept numpy 1.23.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas-stubs)[arguments]: Add phase 'relax-requirements. Change-Id: I62e04574d53abd7d67068d08475522dd8989dcca
2024-05-05gnu: python-pandas-stubs: Update tests.Ricardo Wurmus
This is a follow-up to adding ORC support to pyarrow. * gnu/packages/python-science.scm (python-pandas-stubs)[arguments]: Disable more tests that are due to enabling ORC support to pyarrow. Change-Id: I8c3ca6afff8128792738251c85a1dba3dc3b0569
2024-05-05gnu: Add python-scikit-build-core.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-build-core): New variable. Change-Id: If234d19d720afe88f6893bdd36fcc4955a45c5d3
2024-05-05gnu: python-distributed: Update to 2024.4.2.Ricardo Wurmus
* gnu/packages/python-science.scm (python-distributed): Update to 2024.4.2. [propagated-inputs]: Add python-dask-expr. [arguments]: Adjust tests. Change-Id: I9d3b45d14ae052f3a5a5dec3587bc01d13e4b71f
2024-05-05gnu: Add python-dask-expr.Ricardo Wurmus
* gnu/packages/python-science.scm (python-dask-expr): New variable. Change-Id: I691593ab713fe865c771aa68b5521c4c10cc58f6
2024-05-05gnu: python-pandas-stub: Update to 2.1.1.230928.Ricardo Wurmus
This is a follow-up to commit ff2d0ecfca87450c82df8d74666261b1c19cbe66. * gnu/packages/python-science.scm (python-pandas-stub): Update to 2.1.1.230928. Change-Id: I2e8ce18bd25399b467a6ff2a6fb846f8bb969e4c
2024-05-05gnu: python-pandas-2: Fix version.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Write version string to "_version.py", not "_version_meson.py" to avoid reporting the version as "0+unknown". Change-Id: I1a18814e37c023102714326bc8bd505705234205
2024-05-05gnu: python-pyjanitor: Update to 0.27.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pyjanitor): Update to 0.27.0. [arguments]: Disable a few more tests; add phase 'pandas-compat. Change-Id: Ia8891971a687342166f30ded11f9e341a208d95e
2024-05-05gnu: python-xarray: Disable tests that are known to fail.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray)[arguments]: Disable two tests. Change-Id: I70954173e0aca5a377cf19476e9390a97febadc7
generated by cgit v1.2.3 (git 2.45.2) at 2025-03-19 16:24:20 +0000