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2024-01-16gnu: python-xarray: Update to 2023.12.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray): Update to 2023.12.0. [arguments]: Ignore one test file. [propagated-inputs]: Add python-packaging. Change-Id: I6b70f59670f7bc8b56787fe3436579db8ac113bb
2024-01-16gnu: python-pandas: Update to 1.5.3.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas): Update to 1.5.3. [build-system]: Use pyproject-build-system. [arguments]: Use G-expression; move test flags to #:test-flags; add phase 'patch-build-system; fix substitution of "which" executable; remove 'enable-parallel-build; remove custom 'check phase; add 'pre-check phase. [propagated-inputs]: Add python-matplotlib. [native-inputs]: Replace python-cython with python-cython-0.29.35. Change-Id: I9d09971f707b925f469e29be67fe040c181314ff
2024-01-16gnu: python-scikit-optimize: Make compatible with latest sklearn.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-optimize)[source]: Add snippet to fix outdated use of "max_features" option. Change-Id: I4272ffc82b4951315b74b4adee27527e8d513fca
2024-01-16gnu: python-scikit-image: Update to 0.22.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.22.0. [source]: Fetch from git repository. [build-system]: Use pyproject-build-system. [arguments]: Use G-expression; remove custom 'build phase; simplify 'check phase; enable all tests. [propagated-inputs]: Add python-lazy-loader. [native-inputs]: Add meson-python, python-numpydoc, python-packaging, and python-wheel. Change-Id: I00ede026a7941eae36157106f753a21fb64099c3
2024-01-16gnu: python-scipy: Update to 1.11.4.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scipy): Update to 1.11.4. [arguments]: Use mesonpy backend. [inputs]: Replace pybind11 with pybind11-2.10. [native-inputs]: Add python-click, python-doit, python-pooch, and python-pydevtool; replace python-cython with python-cython-0.29.35. Change-Id: I4b26e1b6382899bba24f84461f154e97765e08f5
2024-01-10gnu: python-distributed: Disable breaking test.Ricardo Wurmus
This test times out since the merge of the mesa-updates branch. * gnu/packages/python-science.scm (python-distributed)[arguments]: Disable test_tell_workers_when_peers_have_left. Change-Id: Ib65b971a3a821ea13d36a4be60658ffc366ca6ac
2023-12-15gnu: python-vaex-core: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-vaex-core)[propagated-inputs]: Add python-click. Change-Id: Id91e925832ed107d5b346ba513a9825dc31481f6
2023-12-05gnu: python-pytensor: Update to 2.18.1.Vinicius Monego
* gnu/packages/python-science.scm (python-pytensor): Update to 2.18.1. Change-Id: I7992d8a00c378c008995df3d026c3e05c235ae6d
2023-12-05gnu: python-gpy: Adjust for newer python.Efraim Flashner
* gnu/packages/python-science.scm (python-gpy)[source]: Add snippet to adjust python module imports. Change-Id: I0772febb97d75e0a0caa331913c9e7453d11e70d
2023-12-04gnu: Add python-pyfma.Felix Gruber
* gnu/packages/python-science.scm (python-pyfma): New variable. Change-Id: I354d3d56f2799c8c9ac9b868fcacbf88dcc5c25d Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-12-04gnu: Add python-meshzoo.Felix Gruber
* gnu/packages/python-science.scm (python-meshzoo): New variable. Change-Id: Ia41d62ebd6c4cb3c22ebe0668c36279a9ca191ac Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-11-15gnu: Add python-tdda.Troy Figiel
* gnu/packages/python-science.scm (python-tdda): New variable. Change-Id: I456aa236b3348e5b990289d8a381c2d5276a12f1 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-11-03gnu: python-pytensor: Update to 2.17.3.Vinicius Monego
* gnu/packages/python-science.scm (python-pytensor): Update to 2.17.3. Change-Id: I2843aca1df4d43883bf643e6e363bd3700202c45
2023-11-03gnu: Add python-salib.Vinicius Monego
* gnu/packages/python-science.scm (python-salib): New variable.
2023-10-17gnu: python-trimesh: Update to 3.23.5.Paul A. Patience
* gnu/packages/python-science.scm (python-trimesh): Update to 3.23.5. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17gnu: python-pyvista: Update to 0.42.3.Paul A. Patience
* gnu/packages/python-science.scm (python-pyvista): Update to 0.42.3. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-08gnu: python-distributed: Disable failing tests.Nicolas Graves
* gnu/packages/python-science.scm (python-distributed): Disable failing tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-30gnu: Add python-numpoly.Vinicius Monego
* gnu/packages/python-science.scm (python-numpoly): New variable.
2023-08-05gnu: python-pytensor: Update to 2.14.2.Vinicius Monego
* gnu/packages/python-science.scm (python-pytensor): Update to 2.14.2. [native-inputs]: Add python-pytest-mock.
2023-07-29gnu: Add python-scikit-fem.Vinicius Monego
* gnu/packages/python-science.scm (python-scikit-fem): New variable.
2023-07-15gnu: python-distributed: Update to 2023.7.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-distributed): Update to 2023.7.0.
2023-07-13gnu: Add python-plotnine.Ricardo Wurmus
* gnu/packages/python-science.scm (python-plotnine): New variable.
2023-06-29gnu: python-pandas-flavor: Update to 0.5.0.Arun Isaac
* gnu/packages/python-science.scm (python-pandas-flavor): Update to 0.5.0. [propagated-inputs]: Add python-lazy-loader and python-packaging. [home-page]: Update.
2023-06-29gnu: python-distributed: Disable timeout test.Ricardo Wurmus
* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable test_nanny_timeout, because it times out.
2023-06-25gnu: python-trimesh: Update to 3.22.1.Paul A. Patience
* gnu/packages/python-science.scm (python-trimesh): Update to 3.22.1. [arguments]<#:phases>: Update path in 'fix-build' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-06-25gnu: Add python-pytensor.Vinicius Monego
* gnu/packages/python-science.scm (python-pytensor): New variable.
2023-06-25gnu: Add python-xarray-einstats.Vinicius Monego
* gnu/packages/python-science.scm (python-xarray-einstats): New variable.
2023-06-25gnu: python-xarray: Update to 2023.6.0.Vinicius Monego
* gnu/packages/python-science.scm (python-xarray): Update to 2023.6.0. [build-system]: Switch to pyproject-build-system. [arguments]: Do not override the check phase.
2023-06-25gnu: Add python-einops.Vinicius Monego
* gnu/packages/python-science.scm (python-einops): New variable.
2023-06-20gnu: python-pyvista: Update to 0.39.1.Paul A. Patience
* gnu/packages/python-science.scm (python-pyvista): Update to 0.39.1. [propagated-inputs]: Add python-pooch, remove python-appdirs. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-05-11gnu: python-distributed: Update to 2023.4.1.Ricardo Wurmus
* gnu/packages/python-science.scm (python-distributed): Update to 2023.4.1. [source]: Remove snippet. [arguments]: Update build phase 'versioneer; restore 'sanity-check phase; simplify custom 'check phase; add 'fix-pytest-config phase; use #:test-flags. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-importlib-metadata.
2023-05-10gnu: python-scikit-optimize: Fix build with newer numpy and sklearn.Ricardo Wurmus
* gnu/packages/patches/python-scikit-optimize-1148.patch, gnu/packages/patches/python-scikit-optimize-1150.patch: New patches. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/python-science.scm (python-scikit-optimize)[source]: Fetch with git and apply patches.
2023-05-08gnu: python-bottleneck: Honor #:tests? flag.Efraim Flashner
* gnu/packages/python-science.scm (python-bottleneck)[arguments]: Adjust custom 'check phase to honor the #:tests? flag.
2023-05-08gnu: python-bottleneck: Update to 1.3.7.Efraim Flashner
* gnu/packages/python-science.scm (python-bottleneck): Update to 1.3.7.
2023-04-26gnu: python-distributed: Fix build.Ricardo Wurmus
* gnu/packages/python-science.scm (python-distributed)[build-system]: Use pyproject-build-system. [arguments]: Hide deprecation warnings from tornado, because they break almost all tests; disable three more tests.
2023-04-14Merge branch 'master' into core-updates.Maxim Cournoyer
Conflicts: gnu/local.mk gnu/packages/build-tools.scm gnu/packages/certs.scm gnu/packages/check.scm gnu/packages/compression.scm gnu/packages/cups.scm gnu/packages/fontutils.scm gnu/packages/gnuzilla.scm gnu/packages/guile.scm gnu/packages/ibus.scm gnu/packages/image-processing.scm gnu/packages/linux.scm gnu/packages/music.scm gnu/packages/nss.scm gnu/packages/pdf.scm gnu/packages/python-xyz.scm gnu/packages/qt.scm gnu/packages/ruby.scm gnu/packages/shells.scm gnu/packages/tex.scm gnu/packages/video.scm gnu/packages/vulkan.scm gnu/packages/web.scm gnu/packages/webkit.scm gnu/packages/wm.scm
2023-04-11gnu: python-scipy: Update to 1.10.1.Maxim Cournoyer
* gnu/packages/python-science.scm (python-scipy): Update to 1.10.1. [build-system]: Use pyproject-build-system. [arguments]: Add #:build-backend argument. Remove loosen-requirements, build and install phases. [native-inputs]: Remove python-pypa-build.
2023-03-24gnu: python-scikit-allel: Use pyproject-build-system.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-allel): Move up to create alphabetic order. [build-system]: Use pyproject-build-system. [arguments]: Provide test flags instead of overriding 'check phase; split out build step into new 'build-ext phase. Disable roh_mhmm tests.
2023-03-24gnu: Add python-scikit-optimize.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-optimize): New variable.
2023-03-21gnu: Add python-libneuroml.Lars-Dominik Braun
* gnu/packages/python-science.scm (python-libneuroml): New variable.
2023-03-21gnu: Add python-pylems.Lars-Dominik Braun
* gnu/packages/python-science.scm (python-pylems): New variable.
2023-01-08gnu: Add python-pydicom.Antero Mejr
* gnu/packages/python-science.scm (python-pydicom): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-05gnu: python-sgp4: Move to astronomy.Sharlatan Hellseher
* gnu/packages/astronomy.scm: (python-sgp4): Move here from python-science.scm. [description]: Expand description, annotate acronyms, add link to CelesTrak. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-05gnu: python-sgp4: Update to 2.21.Sharlatan Hellseher
The latest version passes build on aarch64-linux system. * gnu/packages/python-science.scm (python-sgp4): Update to 2.21. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-02gnu: python-msgpack-numpy: Update to 0.4.8.Navid Afkhami
* gnu/packages/python-science.scm (python-msgpack-numpy): Update to 0.4.8.
2022-11-11gnu: Add python-tspex.Navid Afkhami
* gnu/packages/python-science.scm (python-tspex): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2022-11-04gnu: Add python-pyts.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pyts): New variable.
2022-10-18gnu: Add python-simple-pid.jgart
* gnu/packages/python-science.scm (python-simple-pid): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-09-29Merge branch 'master' into stagingMarius Bakke
2022-09-28gnu: Add python-simplespectral.Guillaume Le Vaillant
* gnu/packages/python-science.scm (python-simplespectral): New variable.
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