diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 17 |
1 files changed, 9 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d18d5d8611..7861987704 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5834,7 +5834,7 @@ of nucleic acid binding proteins.") (find-files "../bin" ".*")) #t)))))) (inputs - (list gsl lapack openblas perl + (list gsl openblas perl `(,gfortran "lib"))) (home-page "https://github.com/DReichLab/EIG") (synopsis "Tools for population genetics") @@ -8673,7 +8673,9 @@ predicts the locations of structural units in the sequences.") (substitute* "Makefile" (("INSTALLDIR=.*") (string-append - "INSTALLDIR=" (assoc-ref outputs "out") "/bin\n"))) + "INSTALLDIR=" (assoc-ref outputs "out") "/bin\n")) + (("-llapack -lblas") + "-lopenblas")) #t)) (add-before 'install 'make-install-directory ;; The install directory is not created during 'make install'. @@ -8697,7 +8699,6 @@ predicts the locations of structural units in the sequences.") ("perl" ,perl) ("python" ,python-wrapper) ("blast+" ,blast+) - ("lapack" ,lapack) ("openblas" ,openblas))) (native-inputs (list which)) @@ -9662,8 +9663,8 @@ accessed/downloaded on demand across HTTP.") (arguments `(#:tests? #f ;no "check" target #:make-flags ,#~(list (string-append "LIB_LAPACK=" - #$(this-package-input "lapack") - "/lib/liblapack.so") + #$(this-package-input "openblas") + "/lib/libopenblas.so") "WITH_LAPACK=1" "FORCE_DYNAMIC=1" ;; disable phoning home @@ -9678,7 +9679,7 @@ accessed/downloaded on demand across HTTP.") "/bin/"))) (install-file "plink" bin))))))) (inputs - (list zlib lapack)) + (list zlib openblas)) (native-inputs (list unzip gcc-8)) (home-page "http://pngu.mgh.harvard.edu/~purcell/plink/") @@ -9713,7 +9714,7 @@ subsequent visualization, annotation and storage of results.") (list #:tests? #false ;TEST_EXTRACT_CHR doesn't produce expected files #:make-flags - #~(list "BLASFLAGS=-llapack -lopenblas" + #~(list "BLASFLAGS=-lopenblas" "NO_SSE42=1" "NO_AVX2=1" "STATIC_ZSTD=" @@ -9740,7 +9741,7 @@ subsequent visualization, annotation and storage of results.") (string-append (assoc-ref outputs "out") "/bin"))))))) (inputs - (list lapack openblas zlib `(,zstd "lib"))) + (list openblas zlib `(,zstd "lib"))) (native-inputs (list diffutils plink python simde)) ; for tests (home-page "https://www.cog-genomics.org/plink/") |