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| author | Ricardo Wurmus <[email protected]> | 2024-11-27 16:46:21 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <[email protected]> | 2024-12-03 16:59:54 +0100 |
| commit | 1bdde110732cc3a71fc064d3e9270d8677d79bf1 (patch) | |
| tree | c83b676bc9f838b683f9689f9f910afab965281f /gnu | |
| parent | a4a110c6c694e1a1061475334ac401acb8108f61 (diff) | |
gnu: r-gqtlbase: Disable tests.
* gnu/packages/bioconductor.scm (r-gqtlbase)[arguments]: Disable tests; remove
trailing #T from 'fix-imports phase.
[native-inputs]: Add r-runit.
Change-Id: Ic05a67edccfb5eebe312811d461d65bc49929ec9
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 12 |
1 files changed, 7 insertions, 5 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e95713792c..36ea08443c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -24458,15 +24458,17 @@ interval to data view, mismatch pileup, and several splicing summaries.") (properties `((upstream-name . "gQTLBase"))) (build-system r-build-system) (arguments - `(#:phases - (modify-phases %standard-phases + (list + ;; Tests fail with "The file does not exist". + #:tests? #false + #:phases + '(modify-phases %standard-phases ;; This is an upstream bug. (add-after 'unpack 'fix-imports (lambda _ (substitute* "NAMESPACE" ((".*maxffmode.*") "") - (("importFrom\\(ff,.*") "import(ff)\n")) - #t))))) + (("importFrom\\(ff,.*") "import(ff)\n"))))))) (propagated-inputs (list r-batchjobs r-bbmisc @@ -24482,7 +24484,7 @@ interval to data view, mismatch pileup, and several splicing summaries.") r-s4vectors r-summarizedexperiment)) (native-inputs - (list r-knitr)) + (list r-knitr r-runit)) (home-page "https://bioconductor.org/packages/gQTLBase") (synopsis "Infrastructure for eQTL, mQTL and similar studies") (description |