diff options
| author | Ludovic Courtès <[email protected]> | 2021-09-06 21:53:32 +0200 |
|---|---|---|
| committer | Ludovic Courtès <[email protected]> | 2021-09-06 22:02:15 +0200 |
| commit | b949f34f31a045eb0fb242b81a223178fb6994d3 (patch) | |
| tree | 837a94d9d642039f46ce071b8ac1adbb805b3a71 /gnu/packages/bioinformatics.scm | |
| parent | 3dc8052b51241fe7857059d3300dad3a0f9f68fd (diff) | |
gnu: Use the non-deprecated TeX packages.
This commit leaves 'dblatex' and 'texlive-hyperref' as users of
deprecated packages, but these have many dependents.
* gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Use
non-deprecated TeX Live packages.
(velvet)[native-inputs]: Likewise.
* gnu/packages/chez.scm (chez-scheme)[native-inputs]: Likewise.
(chez-web)[native-inputs]: Likewise.
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Likewise.
* gnu/packages/guile-xyz.scm (emacsy)[native-inputs]: Likewise.
* gnu/packages/maths.scm (hypre)[native-inputs]: Likewise.
* gnu/packages/music.scm (lilypond)[native-inputs]: Likewise.
* gnu/packages/ocaml.scm (ocaml-bibtex2html)[native-inputs]: Likewise.
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-numpy-documentation)[native-inputs]:
Likewise.
(python-matplotlib-documentation)[native-inputs]: Likewise.
(python-ipython-documentation)[native-inputs]: Likewise.
(python-nbconvert)[native-inputs]: Likewise.
(python-pypandoc)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Likewise.
* gnu/packages/tex.scm (texlive-pstool)[propagated-inputs]: Likewise.
(teximpatient)[native-inputs]: Likewise.
(texlive-latex-pgf)[propagated-inputs]: Likewise.
(texlive-beamer)[propagated-inputs]: Likewise.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0718b5e31c..430551887d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3110,9 +3110,9 @@ data and settings.") `(("texlive" ,(texlive-updmap.cfg (list texlive-cm texlive-amsfonts - texlive-latex-doi + texlive-doi texlive-latex-examplep - texlive-latex-hyperref + texlive-hyperref texlive-latex-ms texlive-latex-natbib texlive-bibtex ; style files used by natbib @@ -12776,7 +12776,7 @@ to an artifact/contaminant file.") ("zlib" ,zlib))) (native-inputs `(("texlive" ,(texlive-updmap.cfg (list texlive-latex-graphics - texlive-latex-hyperref))))) + texlive-hyperref))))) (home-page "https://www.ebi.ac.uk/~zerbino/velvet/") (synopsis "Nucleic acid sequence assembler for very short reads") (description |