diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2025-01-08 20:19:06 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2025-01-20 21:37:38 +0100 |
| commit | 8979655ddf8d2903f4d6481bbbc519227d6ffc2c (patch) | |
| tree | 747274ee6a0444f81dceb2a6dc5e5ff2550c814e /gnu/packages/bioinformatics.scm | |
| parent | 72e25861ed622f29d645c169aa580ee715b69105 (diff) | |
gnu: python-liana-py: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (python-liana-py): Update to 1.4.0.
[arguments]: Adjust disabled tests.
Change-Id: I9245285e2d043b5e7cbce5fb95a30982cd981597
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 20 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 05278882ec..7e21809cbd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2679,7 +2679,7 @@ servers supporting the protocol.") (define-public python-liana-py (package (name "python-liana-py") - (version "1.1.0") + (version "1.4.0") (source (origin (method git-fetch) (uri (git-reference @@ -2688,7 +2688,7 @@ servers supporting the protocol.") (file-name (git-file-name name version)) (sha256 (base32 - "0f5al0v55haja91q9gd409v7q78mmp1wv9znsplsbjp6lfspjfnw")))) + "1kwbhfmsjhfc6m4kcp4zc2xgzg1qf16ywfkdamn868anwwrvjxzb")))) (build-system pyproject-build-system) (arguments (list @@ -2696,20 +2696,36 @@ servers supporting the protocol.") '(list "-k" ;; These tests require internet access. (string-append "not test_generate_lr_resource" + " and not test_get_hcop" " and not test_get_metalinks" " and not test_get_metalinks_values" " and not test_describe_metalinks" " and not test_generate_nondefault_lr_resource" + " and not test_translate_resource" ;; Minor accuracy difference " and not test_bivar_morans_perms" + ;; XXX "local_scores" array has wrong type. + ;; See https://github.com/saezlab/liana-py/issues/147 + " and not test_morans_analytical" + " and not test_cosine_permutation" + " and not test_jaccard_pval_none_cats" + " and not test_large_adata" + ;; XXX ligand column differs: the left column + ;; contains duplicates. + " and not test_liana_pipe_not_defaults" + " and not test_liana_pipe_defaults" ;; XXX unclear failure: 'coo_matrix' object is not ;; subscriptable " and not test_bivar_product" - ) + ;; XXX unclear failure: large difference in data + ;; frames. + " and not test_aggregate_res") ;; These need the optional squidpy, which we don't have yet. "--ignore=liana/tests/test_misty.py" ;; These need the optional corneto. - "--ignore=liana/tests/test_causalnet.py") + "--ignore=liana/tests/test_causalnet.py" + ;; Needs internet access. + "--ignore=liana/tests/test_orthology.py") #:phases '(modify-phases %standard-phases (add-after 'unpack 'relax-requirements |