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| author | Ricardo Wurmus <[email protected]> | 2024-11-26 11:33:02 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <[email protected]> | 2024-12-03 16:59:41 +0100 |
| commit | b004a53d628691a4b4e107a299e6802c8c4e0de7 (patch) | |
| tree | 617c4182147ff6c8090c039d7e0e013ccd0d846b /gnu/packages/bioconductor.scm | |
| parent | 8ba6083276439ac24d8145e5db68d98623ad90b3 (diff) | |
gnu: Add r-txdb-mmusculus-ucsc-mm10-ensgene.
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-ensgene): New variable.
Change-Id: I5caa7d292ea0f81df5acf3f522fd3cf1ca9acb13
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 6eeb809c59..b9eeb6675d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1562,6 +1562,28 @@ is derived from the UCSC mm9 genome and based on the \"knownGene\" track. The database is exposed as a @code{TxDb} object.") (license license:artistic2.0))) +(define-public r-txdb-mmusculus-ucsc-mm10-ensgene + (package + (name "r-txdb-mmusculus-ucsc-mm10-ensgene") + (version "3.4.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "TxDb.Mmusculus.UCSC.mm10.ensGene" version + 'annotation)) + (sha256 + (base32 "0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s")))) + (properties `((upstream-name . "TxDb.Mmusculus.UCSC.mm10.ensGene"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi r-genomicfeatures)) + (home-page + "https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.ensGene") + (synopsis "Annotation package for TxDb object(s)") + (description + "This package exposes an annotation databases generated from UCSC by +exposing these as @code{TxDb} objects.") + (license license:artistic2.0))) + (define-public r-txdb-mmusculus-ucsc-mm10-knowngene (package (name "r-txdb-mmusculus-ucsc-mm10-knowngene") |