diff options
author | Sharlatan Hellseher <[email protected]> | 2025-01-22 21:00:59 +0000 |
---|---|---|
committer | Sharlatan Hellseher <[email protected]> | 2025-01-22 21:06:22 +0000 |
commit | 1b83198655db556316ce29933504a8e5476bb3e6 (patch) | |
tree | 1876821f6ea87cf0e176b873a93d355e13b7de7b | |
parent | acbff09fe5c4e61c0eab61da05dcfbbac86b92d7 (diff) |
gnu: Add go-github-com-biogo-store.
This change merges all extracted subdirs under the same variable as it's
distributed in single module according to project's go.mod.
* gnu/packages/bioinformatics.scm (go-github-com-biogo-store-kdtree,
go-github-com-biogo-store-llrb, go-github-com-biogo-store-step):
Delete variables.
(go-github-com-biogo-store): New variable.
[arguments] <skip-build?>: No go files in project's root.
<import-path>: Set as seen in go.mod.
(go-github-com-biogo-biogo) [propagated-inputs]: Remove
go-github-com-biogo-store-kdtree, go-github-com-biogo-store-llrb, and
go-github-com-biogo-store-step. Add go-github-com-biogo-store.
Change-Id: I1db4efea31fc7f1f5e96b21e874a523cf631f370
-rw-r--r-- | gnu/packages/bioinformatics.scm | 50 |
1 files changed, 6 insertions, 44 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 170651d991..f778d71fd2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -24338,9 +24338,9 @@ for nanopore cDNA, native RNA, and PacBio sequencing reads.") functions.") (license license:bsd-3))) -(define-public go-github-com-biogo-store-interval +(define-public go-github-com-biogo-store (package - (name "go-github-com-biogo-store-interval") + (name "go-github-com-biogo-store") (version "0.0.0-20201120204734-aad293a2328f") (source (origin (method git-fetch) @@ -24353,8 +24353,9 @@ functions.") "0skizrp1j6vgbl0g1kmh73picagqlvwckaqs0gkl6rai5lckxj8a")))) (build-system go-build-system) (arguments - '(#:import-path "github.com/biogo/store/interval" - #:unpack-path "github.com/biogo/store")) + (list + #:skip-build? #t + #:import-path "github.com/biogo/store")) (propagated-inputs (list go-gopkg-in-check-v1 go-github-com-kr-pretty)) @@ -24365,42 +24366,6 @@ functions.") useful for bioinformatic analysis.") (license license:bsd-3))) -(define-public go-github-com-biogo-store-kdtree - (package - (inherit go-github-com-biogo-store-interval) - (name "go-github-com-biogo-store-kdtree") - (arguments - '(#:import-path "github.com/biogo/store/kdtree" - #:unpack-path "github.com/biogo/store")) - (propagated-inputs - (list go-gopkg-in-check-v1 - go-github-com-kr-pretty)) - (synopsis "kdtree store type for biogo"))) - -(define-public go-github-com-biogo-store-llrb - (package - (inherit go-github-com-biogo-store-interval) - (name "go-github-com-biogo-store-llrb") - (arguments - '(#:import-path "github.com/biogo/store/llrb" - #:unpack-path "github.com/biogo/store")) - (propagated-inputs - (list go-gopkg-in-check-v1 - go-github-com-kr-pretty)) - (synopsis "LLRB store for biogo"))) - -(define-public go-github-com-biogo-store-step - (package - (inherit go-github-com-biogo-store-interval) - (name "go-github-com-biogo-store-step") - (arguments - '(#:import-path "github.com/biogo/store/step" - #:unpack-path "github.com/biogo/store")) - (propagated-inputs - (list go-gopkg-in-check-v1 - go-github-com-kr-pretty)) - (synopsis "Step store for biogo"))) - (define-public go-github-com-biogo-hts (package (name "go-github-com-biogo-hts") @@ -24451,10 +24416,7 @@ CSIv1, CSIv2 and FAI files.") '(#:import-path "github.com/biogo/biogo")) (propagated-inputs (list go-gopkg-in-check-v1 - go-github-com-biogo-store-interval - go-github-com-biogo-store-kdtree - go-github-com-biogo-store-llrb - go-github-com-biogo-store-step + go-github-com-biogo-store go-github-com-biogo-hts go-github-com-biogo-graph)) (home-page "https://github.com/biogo/biogo") |