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authorSharlatan Hellseher <[email protected]>2025-01-22 21:00:59 +0000
committerSharlatan Hellseher <[email protected]>2025-01-22 21:06:22 +0000
commit1b83198655db556316ce29933504a8e5476bb3e6 (patch)
tree1876821f6ea87cf0e176b873a93d355e13b7de7b
parentacbff09fe5c4e61c0eab61da05dcfbbac86b92d7 (diff)
gnu: Add go-github-com-biogo-store.
This change merges all extracted subdirs under the same variable as it's distributed in single module according to project's go.mod. * gnu/packages/bioinformatics.scm (go-github-com-biogo-store-kdtree, go-github-com-biogo-store-llrb, go-github-com-biogo-store-step): Delete variables. (go-github-com-biogo-store): New variable. [arguments] <skip-build?>: No go files in project's root. <import-path>: Set as seen in go.mod. (go-github-com-biogo-biogo) [propagated-inputs]: Remove go-github-com-biogo-store-kdtree, go-github-com-biogo-store-llrb, and go-github-com-biogo-store-step. Add go-github-com-biogo-store. Change-Id: I1db4efea31fc7f1f5e96b21e874a523cf631f370
-rw-r--r--gnu/packages/bioinformatics.scm50
1 files changed, 6 insertions, 44 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 170651d991..f778d71fd2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -24338,9 +24338,9 @@ for nanopore cDNA, native RNA, and PacBio sequencing reads.")
functions.")
(license license:bsd-3)))
-(define-public go-github-com-biogo-store-interval
+(define-public go-github-com-biogo-store
(package
- (name "go-github-com-biogo-store-interval")
+ (name "go-github-com-biogo-store")
(version "0.0.0-20201120204734-aad293a2328f")
(source (origin
(method git-fetch)
@@ -24353,8 +24353,9 @@ functions.")
"0skizrp1j6vgbl0g1kmh73picagqlvwckaqs0gkl6rai5lckxj8a"))))
(build-system go-build-system)
(arguments
- '(#:import-path "github.com/biogo/store/interval"
- #:unpack-path "github.com/biogo/store"))
+ (list
+ #:skip-build? #t
+ #:import-path "github.com/biogo/store"))
(propagated-inputs
(list go-gopkg-in-check-v1
go-github-com-kr-pretty))
@@ -24365,42 +24366,6 @@ functions.")
useful for bioinformatic analysis.")
(license license:bsd-3)))
-(define-public go-github-com-biogo-store-kdtree
- (package
- (inherit go-github-com-biogo-store-interval)
- (name "go-github-com-biogo-store-kdtree")
- (arguments
- '(#:import-path "github.com/biogo/store/kdtree"
- #:unpack-path "github.com/biogo/store"))
- (propagated-inputs
- (list go-gopkg-in-check-v1
- go-github-com-kr-pretty))
- (synopsis "kdtree store type for biogo")))
-
-(define-public go-github-com-biogo-store-llrb
- (package
- (inherit go-github-com-biogo-store-interval)
- (name "go-github-com-biogo-store-llrb")
- (arguments
- '(#:import-path "github.com/biogo/store/llrb"
- #:unpack-path "github.com/biogo/store"))
- (propagated-inputs
- (list go-gopkg-in-check-v1
- go-github-com-kr-pretty))
- (synopsis "LLRB store for biogo")))
-
-(define-public go-github-com-biogo-store-step
- (package
- (inherit go-github-com-biogo-store-interval)
- (name "go-github-com-biogo-store-step")
- (arguments
- '(#:import-path "github.com/biogo/store/step"
- #:unpack-path "github.com/biogo/store"))
- (propagated-inputs
- (list go-gopkg-in-check-v1
- go-github-com-kr-pretty))
- (synopsis "Step store for biogo")))
-
(define-public go-github-com-biogo-hts
(package
(name "go-github-com-biogo-hts")
@@ -24451,10 +24416,7 @@ CSIv1, CSIv2 and FAI files.")
'(#:import-path "github.com/biogo/biogo"))
(propagated-inputs
(list go-gopkg-in-check-v1
- go-github-com-biogo-store-interval
- go-github-com-biogo-store-kdtree
- go-github-com-biogo-store-llrb
- go-github-com-biogo-store-step
+ go-github-com-biogo-store
go-github-com-biogo-hts
go-github-com-biogo-graph))
(home-page "https://github.com/biogo/biogo")