diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/astronomy.scm | 506 |
1 files changed, 253 insertions, 253 deletions
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 55bbe6b00a..84307ce0b4 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -2020,6 +2020,57 @@ processing of CCD images built on a framework to provide error propagation and bad pixel tracking throughout the reduction process.") (license license:bsd-3))) +(define-public python-cdflib + (package + (name "python-cdflib") + (version "1.3.2") + (source + (origin + (method git-fetch) ; no tests in PyPI release + (uri (git-reference + (url "https://github.com/MAVENSDC/cdflib") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0g723s5xg7vd37vlbjpgpiljd3vxwccslwzcf619zvdnc2xbcw2c")))) + (build-system pyproject-build-system) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (add-before 'build 'set-env-version + (lambda _ + (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" + #$version))) + (add-before 'check 'set-home-env + (lambda _ + (setenv "HOME" (getcwd))))))) + (native-inputs + (list python-astropy + python-hypothesis + python-pytest + python-pytest-cov + python-pytest-remotedata + python-setuptools + python-setuptools-scm + python-xarray + python-wheel)) + (propagated-inputs + (list python-numpy)) + (home-page "https://github.com/MAVENSDC/cdflib") + (synopsis "Python library to deal with NASA's CDF astronmical data format") + (description "This package provides a Python @acronym{CDF, Computable +Document Format} reader toolkit. +It provides the following functionality: +@itemize +@item Ability to read variables and attributes from CDF files +@item Writes CDF version 3 files +@item Can convert between CDF time types (EPOCH/EPOCH16/TT2000) to other common +time formats +@item Can convert CDF files into XArray Dataset objects and vice versa, +attempting to maintain ISTP compliance +@end itemize") + (license license:expat))) + (define-public python-coolest (package (name "python-coolest") @@ -2089,6 +2140,53 @@ lens models possibly obtained from different modeling codes.") cosmological parameters e.g. redshift or luminosity-distance.") (license license:expat))) +(define-public python-crds + (package + (name "python-crds") + (version "12.0.8") + (source + (origin + (method url-fetch) + (uri (pypi-uri "crds" version)) + (sha256 + (base32 "09kdpaywj88n31jard4wbqmb9132qf6fk0ar2z6ca9vswavivfk8")))) + (build-system pyproject-build-system) + (arguments + (list + ;; XXX: Tests require Internet access to https://hst-crds.stsci.edu and + ;; additional test data. See: + ;; https://github.com/spacetelescope/crds/blob/master/setup_test_cache + #:tests? #f)) + (propagated-inputs + (list python-asdf + python-astropy + python-boto3 + python-filelock + python-numpy + python-parsley + python-pysynphot + python-roman-datamodels + python-stsynphot + python-requests)) + (native-inputs + (list python-setuptools + python-setuptools-scm + python-wheel)) + (home-page "https://hst-crds.stsci.edu") + (synopsis "Calibration Reference Data System for HST and JWST") + (description + "CRDS is a package used for working with astronomical reference files for +the HST and JWST telescopes. CRDS is useful for performing various operations +on reference files or reference file assignment rules. CRDS is used to +assign, check, and compare reference files and rules, and also to predict +those datasets which should potentially be reprocessed due to changes in +reference files or assignment rules. CRDS has versioned rules which define +the assignment of references for each type and instrument configuration. CRDS +has web sites corresponding to each project @url{http://hst-crds.stsci.edu} or +@url{https://jwst-crds.stsci.edu/} which record information about reference +files and provide related services.") + (license license:bsd-3))) + (define-public python-czml3 (package (name "python-czml3") @@ -2167,6 +2265,52 @@ mapping by using a Python callback. Switching to using an array allowed the code to be greatly simplified.") (license license:bsd-3))) +(define-public python-drms + (package + (name "python-drms") + (version "0.8.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "drms" version)) + (sha256 + (base32 "19lqy510d7iyxfz445h2rn4d0rvmd4d3lnjmvbkvv270ckpfw09f")))) + (build-system pyproject-build-system) + (native-inputs + (list python-astropy python-pytest-astropy python-setuptools-scm)) + (propagated-inputs + (list python-numpy python-pandas)) + (home-page "https://sunpy.org") + (synopsis "Access astronomical HMI, AIA and MDI data with Python") + (description + "DRMS module provides an easy-to-use interface for accessing HMI, AIA and +MDI data with Python. It uses the publicly accessible +JSOC (@url{http://jsoc.stanford.edu/}) DRMS server by default, but can also be +used with local NetDRMS sites.") + (license license:bsd-2))) + +(define-public python-dust-extinction + (package + (name "python-dust-extinction") + (version "1.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "dust_extinction" version)) + (sha256 + (base32 "0f0g6gh4kj83xfv0cdp30dahs80pnhsj7c6ryz3f59qf6d5zqard")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-astropy python-scipy)) + (native-inputs + (list python-pytest-astropy)) + (home-page "http://dust-extinction.readthedocs.io/") + (synopsis "Interstellar Dust Extinction Models") + (description + "This package provides astronomical interstellar dust extinction curves +implemented using the astropy.modeling framework.") + (license license:bsd-3))) + (define-public python-ephem (package (name "python-ephem") @@ -3170,115 +3314,6 @@ instruments.") "This package provides an image processing toolbox for Solar Physics.") (license license:bsd-2))) -(define-public sextractor - (package - (name "sextractor") - (version "2.28.0") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/astromatic/sextractor") - (commit version))) - (file-name (git-file-name name version)) - (sha256 - (base32 "15v7brjiraj2rdyxiidcgb58b3dqzdd363j31cjrfqhd1wc8ii5j")))) - (build-system gnu-build-system) - ;; NOTE: (Sharlatan-20210124T103117+0000): Building with `atlas' is failing - ;; due to missing shared library which required on configure phase. Switch - ;; build to use `openblas' instead. It requires FFTW with single precision - ;; `fftwf'. - (arguments - (list - #:configure-flags - #~(list - "--enable-openblas" - (string-append "--with-cfitsio-incdir=" - #$(this-package-input "cfitsio") "/include") - (string-append "--with-cfitsio-libdir=" - #$(this-package-input "cfitsio") "/lib") - (string-append "--with-fftw-incdir=" - #$(this-package-input "fftwf") "/include") - (string-append "--with-fftw-libdir=" - #$(this-package-input "fftwf") "/lib") - (string-append "--with-openblas-incdir=" - #$(this-package-input "openblas") "/include") - (string-append "--with-openblas-libdir=" - #$(this-package-input "openblas") "/lib")))) - (native-inputs - (list autoconf automake libtool)) - (inputs - (list cfitsio fftwf openblas)) - (home-page "https://www.astromatic.net/software/sextractor") - (synopsis "Extract catalogs of sources from astronomical images") - (description - "SExtractor is a program that builds a catalogue of objects from an -astronomical image. Although it is particularly oriented towards reduction of -large scale galaxy-survey data, it can perform reasonably well on moderately -crowded star fields.") - (license license:gpl3+))) - -(define-public stackistry - (package - (name "stackistry") - (version "0.3.0") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/GreatAttractor/stackistry") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0rz29v33n0x0k40hv3v79ym5ylch1v0pbph4i21809gz2al5p7dq")))) - (build-system gnu-build-system) - (arguments - (list - #:tests? #f ; No test target - #:make-flags - #~(list - (string-append - "SKRY_INCLUDE_PATH=" #$(this-package-input "libskry") "/include") - (string-append - "SKRY_LIB_PATH=-L" #$(this-package-input "libskry") "/lib") - (string-append - "LIBAV_INCLUDE_PATH=" #$(this-package-input "ffmpeg") "/include")) - #:phases - #~(modify-phases %standard-phases - ;; no configure and tests are provided - (delete 'configure) - (add-after 'unpack 'fix-paths - (lambda _ - (substitute* "src/main.cpp" - (("\"\\.\\.\", \"lang\"") - "\"../share/stackistry\", \"lang\"")) - (substitute* "src/utils.cpp" - (("\"\\.\\.\", \"icons\"") - "\"../share/stackistry\", \"icons\"")))) - (replace 'install - ;; The Makefile lacks an ‘install’ target. - (lambda _ - (let* ((out #$output) - (bin (string-append out "/bin")) - (icons (string-append out "/share/stackistry/icons")) - (lang (string-append out "/share/stackistry/lang"))) - (copy-recursively "bin" bin) - (copy-recursively "icons" icons) - (copy-recursively "lang" lang))))))) - (native-inputs - (list pkg-config)) - (inputs - (list gtkmm-3 libskry ffmpeg-4)) - (home-page "https://github.com/GreatAttractor/stackistry") - (synopsis "Astronomical lucky imaging/image stacking tool") - (description - "Stackistry implements the lucky imaging principle of astronomical -imaging: creating a high-quality still image out of a series of many (possibly -thousands) low quality ones (blurred, deformed, noisy). The resulting image -stack typically requires post-processing, including sharpening (e.g. via -deconvolution). Such post-processing is not performed by Stackistry.") - (license license:gpl3+))) - ;; XXX: Upgrading to the latest version requires Python3.11+ and fresh ;; versions of numpy, PyYAML, packaging, Pandas and matplotlib, see ;; <https://github.com/astropy/astropy/blob/v7.0.0/CHANGES.rst @@ -3661,57 +3696,6 @@ be as fast as possible so some of the readability has been sacrificed, specifically in the C code.") (license license:bsd-3))) -(define-public python-cdflib - (package - (name "python-cdflib") - (version "1.3.2") - (source - (origin - (method git-fetch) ; no tests in PyPI release - (uri (git-reference - (url "https://github.com/MAVENSDC/cdflib") - (commit version))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0g723s5xg7vd37vlbjpgpiljd3vxwccslwzcf619zvdnc2xbcw2c")))) - (build-system pyproject-build-system) - (arguments - (list #:phases - #~(modify-phases %standard-phases - (add-before 'build 'set-env-version - (lambda _ - (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" - #$version))) - (add-before 'check 'set-home-env - (lambda _ - (setenv "HOME" (getcwd))))))) - (native-inputs - (list python-astropy - python-hypothesis - python-pytest - python-pytest-cov - python-pytest-remotedata - python-setuptools - python-setuptools-scm - python-xarray - python-wheel)) - (propagated-inputs - (list python-numpy)) - (home-page "https://github.com/MAVENSDC/cdflib") - (synopsis "Python library to deal with NASA's CDF astronmical data format") - (description "This package provides a Python @acronym{CDF, Computable -Document Format} reader toolkit. -It provides the following functionality: -@itemize -@item Ability to read variables and attributes from CDF files -@item Writes CDF version 3 files -@item Can convert between CDF time types (EPOCH/EPOCH16/TT2000) to other common -time formats -@item Can convert CDF files into XArray Dataset objects and vice versa, -attempting to maintain ISTP compliance -@end itemize") - (license license:expat))) - (define-public python-ci-watson (package (name "python-ci-watson") @@ -3789,99 +3773,6 @@ monochromatic sequential colormaps like @code{blue}, @code{green}, and @code{red}, and others (@code{algae}, @code{pastel}, and @code{xray}).") (license license:bsd-3))) -(define-public python-crds - (package - (name "python-crds") - (version "12.0.8") - (source - (origin - (method url-fetch) - (uri (pypi-uri "crds" version)) - (sha256 - (base32 "09kdpaywj88n31jard4wbqmb9132qf6fk0ar2z6ca9vswavivfk8")))) - (build-system pyproject-build-system) - (arguments - (list - ;; XXX: Tests require Internet access to https://hst-crds.stsci.edu and - ;; additional test data. See: - ;; https://github.com/spacetelescope/crds/blob/master/setup_test_cache - #:tests? #f)) - (propagated-inputs - (list python-asdf - python-astropy - python-boto3 - python-filelock - python-numpy - python-parsley - python-pysynphot - python-roman-datamodels - python-stsynphot - python-requests)) - (native-inputs - (list python-setuptools - python-setuptools-scm - python-wheel)) - (home-page "https://hst-crds.stsci.edu") - (synopsis "Calibration Reference Data System for HST and JWST") - (description - "CRDS is a package used for working with astronomical reference files for -the HST and JWST telescopes. CRDS is useful for performing various operations -on reference files or reference file assignment rules. CRDS is used to -assign, check, and compare reference files and rules, and also to predict -those datasets which should potentially be reprocessed due to changes in -reference files or assignment rules. CRDS has versioned rules which define -the assignment of references for each type and instrument configuration. CRDS -has web sites corresponding to each project @url{http://hst-crds.stsci.edu} or -@url{https://jwst-crds.stsci.edu/} which record information about reference -files and provide related services.") - (license license:bsd-3))) - -(define-public python-drms - (package - (name "python-drms") - (version "0.8.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "drms" version)) - (sha256 - (base32 "19lqy510d7iyxfz445h2rn4d0rvmd4d3lnjmvbkvv270ckpfw09f")))) - (build-system pyproject-build-system) - (native-inputs - (list python-astropy python-pytest-astropy python-setuptools-scm)) - (propagated-inputs - (list python-numpy python-pandas)) - (home-page "https://sunpy.org") - (synopsis "Access astronomical HMI, AIA and MDI data with Python") - (description - "DRMS module provides an easy-to-use interface for accessing HMI, AIA and -MDI data with Python. It uses the publicly accessible -JSOC (@url{http://jsoc.stanford.edu/}) DRMS server by default, but can also be -used with local NetDRMS sites.") - (license license:bsd-2))) - -(define-public python-dust-extinction - (package - (name "python-dust-extinction") - (version "1.5") - (source - (origin - (method url-fetch) - (uri (pypi-uri "dust_extinction" version)) - (sha256 - (base32 "0f0g6gh4kj83xfv0cdp30dahs80pnhsj7c6ryz3f59qf6d5zqard")))) - (build-system pyproject-build-system) - (propagated-inputs - (list python-astropy python-scipy)) - (native-inputs - (list python-pytest-astropy)) - (home-page "http://dust-extinction.readthedocs.io/") - (synopsis "Interstellar Dust Extinction Models") - (description - "This package provides astronomical interstellar dust extinction curves -implemented using the astropy.modeling framework.") - (license license:bsd-3))) - (define-public python-hvpy (package (name "python-hvpy") @@ -6882,6 +6773,54 @@ convenient access to metadata from a regular web browser @end itemize") (license license:gpl3+))) +(define-public sextractor + (package + (name "sextractor") + (version "2.28.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/astromatic/sextractor") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "15v7brjiraj2rdyxiidcgb58b3dqzdd363j31cjrfqhd1wc8ii5j")))) + (build-system gnu-build-system) + ;; NOTE: (Sharlatan-20210124T103117+0000): Building with `atlas' is failing + ;; due to missing shared library which required on configure phase. Switch + ;; build to use `openblas' instead. It requires FFTW with single precision + ;; `fftwf'. + (arguments + (list + #:configure-flags + #~(list + "--enable-openblas" + (string-append "--with-cfitsio-incdir=" + #$(this-package-input "cfitsio") "/include") + (string-append "--with-cfitsio-libdir=" + #$(this-package-input "cfitsio") "/lib") + (string-append "--with-fftw-incdir=" + #$(this-package-input "fftwf") "/include") + (string-append "--with-fftw-libdir=" + #$(this-package-input "fftwf") "/lib") + (string-append "--with-openblas-incdir=" + #$(this-package-input "openblas") "/include") + (string-append "--with-openblas-libdir=" + #$(this-package-input "openblas") "/lib")))) + (native-inputs + (list autoconf automake libtool)) + (inputs + (list cfitsio fftwf openblas)) + (home-page "https://www.astromatic.net/software/sextractor") + (synopsis "Extract catalogs of sources from astronomical images") + (description + "SExtractor is a program that builds a catalogue of objects from an +astronomical image. Although it is particularly oriented towards reduction of +large scale galaxy-survey data, it can perform reasonably well on moderately +crowded star fields.") + (license license:gpl3+))) + (define-public sgp4 ;; Version tag v1.0 is dated to <2021-01-11>, use the lates commit instead. (let ((commit "6a448b4850e5fbf8c1ca03bb5f6013a9fdc1fd91") @@ -7083,6 +7022,67 @@ astrophysics. It uses a command-line menu but data can be manipulated interactively in the plotting window.") (license license:gpl2+))) +(define-public stackistry + (package + (name "stackistry") + (version "0.3.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/GreatAttractor/stackistry") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0rz29v33n0x0k40hv3v79ym5ylch1v0pbph4i21809gz2al5p7dq")))) + (build-system gnu-build-system) + (arguments + (list + #:tests? #f ; No test target + #:make-flags + #~(list + (string-append + "SKRY_INCLUDE_PATH=" #$(this-package-input "libskry") "/include") + (string-append + "SKRY_LIB_PATH=-L" #$(this-package-input "libskry") "/lib") + (string-append + "LIBAV_INCLUDE_PATH=" #$(this-package-input "ffmpeg") "/include")) + #:phases + #~(modify-phases %standard-phases + ;; no configure and tests are provided + (delete 'configure) + (add-after 'unpack 'fix-paths + (lambda _ + (substitute* "src/main.cpp" + (("\"\\.\\.\", \"lang\"") + "\"../share/stackistry\", \"lang\"")) + (substitute* "src/utils.cpp" + (("\"\\.\\.\", \"icons\"") + "\"../share/stackistry\", \"icons\"")))) + (replace 'install + ;; The Makefile lacks an ‘install’ target. + (lambda _ + (let* ((out #$output) + (bin (string-append out "/bin")) + (icons (string-append out "/share/stackistry/icons")) + (lang (string-append out "/share/stackistry/lang"))) + (copy-recursively "bin" bin) + (copy-recursively "icons" icons) + (copy-recursively "lang" lang))))))) + (native-inputs + (list pkg-config)) + (inputs + (list gtkmm-3 libskry ffmpeg-4)) + (home-page "https://github.com/GreatAttractor/stackistry") + (synopsis "Astronomical lucky imaging/image stacking tool") + (description + "Stackistry implements the lucky imaging principle of astronomical +imaging: creating a high-quality still image out of a series of many (possibly +thousands) low quality ones (blurred, deformed, noisy). The resulting image +stack typically requires post-processing, including sharpening (e.g. via +deconvolution). Such post-processing is not performed by Stackistry.") + (license license:gpl3+))) + (define-public stellarium (package (name "stellarium") |