diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 16 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 433e60a47c..28ace95fbc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5962,14 +5962,14 @@ Note that this package has been deprecated in favor of @code{pyfaidx}.") (define-public python-schema-salad (package (name "python-schema-salad") - (version "8.5.20240102191335") + (version "8.8.20241206093842") (source (origin (method url-fetch) - (uri (pypi-uri "schema-salad" version)) + (uri (pypi-uri "schema_salad" version)) (sha256 (base32 - "035202p696i3jylb8b3nm9qcxsqby15hhqn1dl4nrz73a17p0ckx")))) + "13vx3lqivfzsh1qdvx89vxnn25l3ssmzyh06g74psl4kmf9pj51a")))) (build-system pyproject-build-system) (arguments (list @@ -5983,6 +5983,8 @@ Note that this package has been deprecated in favor of @code{pyfaidx}.") (string-append "version=\"" #$version "\""))))) (add-before 'check 'skip-failing-tests (lambda _ + (substitute* "tox.ini" + (("^addopts=.*") "")) ;; Skip tests that require network access. (let ((skip-test (lambda (test-pattern) @@ -6000,16 +6002,22 @@ Note that this package has been deprecated in favor of @code{pyfaidx}.") (skip-test all))))))))) (propagated-inputs (list python-cachecontrol - python-importlib-resources python-mistune python-mypy-extensions python-rdflib python-requests - python-ruamel.yaml - python-setuptools ; For pkg_resources. - python-typing-extensions)) + python-ruamel.yaml)) (native-inputs - (list python-black python-pytest python-pytest-runner + (list python-black + python-cachecontrol + python-mypy + python-pytest + python-pytest-runner + python-setuptools + python-setuptools-scm + python-types-dataclasses + python-types-requests + python-types-setuptools python-wheel)) (home-page "https://github.com/common-workflow-language/schema_salad") (synopsis "Schema Annotations for Linked Avro Data (SALAD)") |