diff options
| -rw-r--r-- | gnu/packages/geo.scm | 161 |
1 files changed, 161 insertions, 0 deletions
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index f36aed98fc..ee7f91a226 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -73,6 +73,7 @@ #:use-module (gnu packages boost) #:use-module (gnu packages build-tools) #:use-module (gnu packages c) + #:use-module (gnu packages certs) #:use-module (gnu packages check) #:use-module (gnu packages cmake) #:use-module (gnu packages compression) @@ -82,6 +83,7 @@ #:use-module (gnu packages cran) #:use-module (gnu packages databases) #:use-module (gnu packages datastructures) + #:use-module (gnu packages digest) #:use-module (gnu packages docbook) #:use-module (gnu packages documentation) #:use-module (gnu packages elf) @@ -2225,6 +2227,165 @@ from multiple records.") "RTree is a Python package with bindings for @code{libspatialindex}.") (license license:expat))) +(define-public python-scitools-iris + (package + (name "python-scitools-iris") + (version "3.11.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "scitools_iris" version)) + (sha256 + (base32 "19qwmi7amr8q2dd17scch4zvdly3vqc23v5zwpq8qw45vmldxfrq")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + #~(list "--numprocesses" (number->string (parallel-job-count)) + "--pyargs" "iris" + "-k" (string-join + ;; Tests requiring additional data files distributed + ;; separately from this project from + ;; <https://github.com/SciTools/iris-test-data> or network + ;; access. + ;; + ;; XXX: Review this list and try to ignore by files + ;; instead in individual tests. + (list "not test_both_transposed" + "test_2d_coords_contour" + "test_2d_plain_latlon" + "test_2d_plain_latlon_on_polar_map" + "test_2d_rotated_latlon" + "test_2d_rotated_latlon" + "test_ancillary_variables_pass_0" + "test_auxiliary_coordinates_pass_0" + "test_bounds" + "test_bounds_pass_0" + "test_broadcast_cubes" + "test_broadcast_cubes_weighted" + "test_broadcast_transpose_cubes_weighted" + "test_cell_measures_pass_0" + "test_common_mask_broadcast" + "test_common_mask_simple" + "test_compatible_cubes" + "test_compatible_cubes_weighted" + "test_coord_transposed" + "test_coordinates_pass_0" + "test_cube_transposed" + "test_data_pass_0" + "test_destructor" + "test_formula_terms_pass_0" + "test_global_attributes_pass_0" + "test_grid_mapping_pass_0" + "test_grouped_dim" + "test_incompatible_cubes" + "test_izip_different_shaped_coords" + "test_izip_different_valued_coords" + "test_izip_extra_coords_both_slice_dims" + "test_izip_extra_coords_slice_dim" + "test_izip_extra_coords_step_dim" + "test_izip_extra_dim" + "test_izip_input_collections" + "test_izip_missing_slice_coords" + "test_izip_nd_non_ortho" + "test_izip_nd_ortho" + "test_izip_no_args" + "test_izip_no_common_coords_on_step_dim" + "test_izip_onecube_height_lat_long" + "test_izip_onecube_lat" + "test_izip_onecube_lat_lon" + "test_izip_onecube_no_coords" + "test_izip_ordered" + "test_izip_returns_iterable" + "test_izip_same_cube_lat" + "test_izip_same_cube_lat_lon" + "test_izip_same_cube_no_coords" + "test_izip_same_dims_single_coord" + "test_izip_same_dims_two_coords" + "test_izip_subcube_of_same" + "test_izip_unequal_slice_coords" + "test_izip_use_in_analysis" + "test_label_dim_end" + "test_label_dim_start" + "test_lenient_handling" + "test_load_pp_timevarying_orography" + "test_mdtol" + "test_netcdf_v3" + "test_no_delayed_writes" + "test_no_transpose" + "test_non_existent_coord" + "test_perfect_corr" + "test_perfect_corr_all_dims" + "test_python_versions" + "test_realfile_loadsave_equivalence" + "test_realise_data" + "test_realise_data_multisource" + "test_scheduler_types" + "test_single_coord" + "test_stream" + "test_stream_multisource" + "test_stream_multisource__manychunks" + "test_time_of_writing" + "test_ungrouped_dim" + "test_variable_attribute_touch_pass_0" + "test_variable_cf_group_pass_0" + "test_weight_error") + " and not ")) + #:phases + #~(modify-phases %standard-phases + ;; GeoVista is not packaged yet, "--ignore" option did not work to + ;; skip test files. + (add-after 'unpack 'delete-failing-test-files + (lambda _ + (with-directory-excursion "lib/iris/tests" + (for-each delete-file-recursively + (list "integration/experimental/geovista" + "unit/experimental/geovista"))))) + (add-after 'unpack 'fix-paths + (lambda _ + (let ((netcdf #$(this-package-native-input "netcdf"))) + (substitute* (list "lib/iris/tests/__init__.py" + "lib/iris/tests/stock/netcdf.py") + (("env_bin_path\\(\"ncgen\"\\)") + (format #f "'~a/bin/ncgen'" netcdf)) + (("env_bin_path\\(\"ncdump\"\\)") + (format #f "'~a/bin/ncdump'" netcdf)))))) + (add-before 'check 'pre-check + (lambda _ + (setenv "HOME" "/tmp")))))) + (native-inputs + (list netcdf ; for ncdump and ncgen + nss-certs-for-test + python-distributed + python-filelock + python-imagehash + python-pytest-xdist + python-pytest + python-setuptools + python-setuptools-scm + python-wheel)) + (propagated-inputs + (list python-cartopy + python-cf-units + python-cftime + python-dask + ;; python-geovista ; optinoal, not packaged yet + python-matplotlib + python-netcdf4 + python-numpy + python-pyproj + python-scipy + python-shapely + python-xxhash)) + (home-page "https://github.com/SciTools/iris") + (synopsis "Earth science data analysing and visualising library") + (description + "Iris is a Python library for analysing and visualising Earth science +data. It excels when working with multi-dimensional Earth Science data, where +tabular representations become unwieldy and inefficient. Iris implements a +data model based on the CF conventions.") + (license license:lgpl3+))) + (define-public java-jmapviewer (package (name "java-jmapviewer") |