Merge branch 'master' into staging.

With "conflicts" solved (all in favor of master except git) in:
	gnu/local.mk
	gnu/packages/databases.scm
	gnu/packages/glib.scm
	gnu/packages/gnome.scm
	gnu/packages/gnupg.scm
	gnu/packages/gnuzilla.scm
	gnu/packages/graphics.scm
	gnu/packages/gstreamer.scm
	gnu/packages/gtk.scm
	gnu/packages/linux.scm
	gnu/packages/machine-learning.scm
	gnu/packages/networking.scm
	gnu/packages/polkit.scm
	gnu/packages/pulseaudio.scm
	gnu/packages/rpc.scm
	gnu/packages/rust.scm
	gnu/packages/version-control.scm
	gnu/packages/w3m.scm

1 files changed, 133 insertions, 27 deletions

diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm
index bbad8ce867..12e3d3b3c8 100644
--- a/gnu/packages/textutils.scm
+++ b/gnu/packages/textutils.scm
@@ -22,6 +22,8 @@
 ;;; Copyright © 2020 Maxim Cournoyer <[email protected]>
 ;;; Copyright © 2021 Jean-Baptiste Volatier <[email protected]>
 ;;; Copyright © 2021 Simon Tournier <[email protected]>
+;;; Copyright © 2021 Felix Gruber <[email protected]>
+;;; Copyright © 2021 Bonface Munyoki Kilyungi <[email protected]>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -42,6 +44,7 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (guix gexp)
   #:use-module (guix git-download)
   #:use-module (guix build-system ant)
   #:use-module (guix build-system gnu)
@@ -67,6 +70,7 @@
   #:use-module (gnu packages readline)
   #:use-module (gnu packages ruby)
   #:use-module (gnu packages slang)
+  #:use-module (gnu packages syncthing)
   #:use-module (gnu packages web))
 
 (define-public dos2unix
@@ -111,8 +115,7 @@ to DOS format and vice versa.")
         (base32 "0m59sd1ca0zw1aydpc3m8sw03nc885knmccqryg7byzmqs585ia6"))))
     (build-system gnu-build-system)
     (native-inputs
-     `(("python" ,python)
-       ("python-cython" ,python-cython)))
+     (list python python-cython))
     (home-page "https://github.com/rrthomas/recode")
     (synopsis "Text encoding converter")
     (description "The Recode library converts files between character sets and
@@ -417,7 +420,7 @@ input bits thoroughly but are not suitable for cryptography.")
         (base32 "0dc9fxcdmppbs9s06jvq61zbk552laxps0xyk098gj41697ihd96"))))
     (build-system gnu-build-system)
     (native-inputs
-     `(("gettext" ,gettext-minimal)))
+     (list gettext-minimal))
     (home-page "https://billposer.org/Software/a2b.html")
     (synopsis "Convert between ASCII, hexadecimal and binary representations")
     (description "The two programs are useful for generating test data, for
@@ -475,8 +478,7 @@ useful when it is desired to reformat numbers.
                  (("^iconv ") (string-append iconv "/bin/iconv ")))
              #t))))))
     (inputs
-     `(("ascii2binary" ,ascii2binary)
-       ("libiconv" ,libiconv)))
+     (list ascii2binary libiconv))
     (home-page "https://billposer.org/Software/unidesc.html")
     (synopsis "Find out what is in a Unicode file")
     (description "Useful tools when working with Unicode files when one
@@ -750,15 +752,9 @@ in a portable way.")
              (invoke "autoreconf" "-vif")
              #t)))))
     (inputs
-     `(("ncurses" ,ncurses)
-       ("perl" ,perl)
-       ("readline" ,readline)
-       ("slang" ,slang)))
+     (list ncurses perl readline slang))
     (native-inputs
-     `(("libtool" ,libtool)
-       ("autoconf" ,autoconf)
-       ("automake" ,automake)
-       ("pkg-config" ,pkg-config)))
+     (list libtool autoconf automake pkg-config))
     (home-page "https://www.lbreyer.com/dbacl.html")
     (synopsis "Bayesian text and email classifier")
     (description
@@ -794,9 +790,7 @@ categories.")
     (build-system gnu-build-system)
     (arguments `(#:tests? #f))  ; FIXME maketest.sh does not work.
     (native-inputs
-     `(("autoconf" ,autoconf)
-       ("automake" ,automake)
-       ("libtool" ,libtool)))
+     (list autoconf automake libtool))
     (home-page "https://github.com/williamh/dotconf")
     (synopsis "Configuration file parser library")
     (description
@@ -853,8 +847,8 @@ categories.")
                           (with-directory-excursion
                               (format #f "../drm_tools-~a" ,version)
                             (invoke "sh" "test_all.sh")))))))))
-    (native-inputs `(("which" ,which))) ;for tests
-    (inputs `(("pcre" ,pcre)))
+    (native-inputs (list which)) ;for tests
+    (inputs (list pcre))
     (home-page "http://drmtools.sourceforge.net/")
     (synopsis "Utilities to manipulate text and binary files")
     (description "The drm_tools package contains the following commands:
@@ -929,8 +923,7 @@ Filter, list, or split a tar file.
        #:tests? #f
        #:jar-name "rsyntaxtextarea.jar"))
     (native-inputs
-     `(("java-junit" ,java-junit)
-       ("java-hamcrest-core" ,java-hamcrest-core)))
+     (list java-junit java-hamcrest-core))
     (home-page "https://bobbylight.github.io/RSyntaxTextArea/")
     (synopsis "Syntax highlighting text component for Java Swing")
     (description "RSyntaxTextArea is a syntax highlighting, code folding text
@@ -969,7 +962,7 @@ source code.")
                  (delete-file "bycython.cpp")
                  (invoke "cython" "--cplus" "bycython.pyx")))))))
       (native-inputs
-       `(("python-cython" ,python-cython)))
+       (list python-cython))
       (home-page "https://www.github.com/aflc/editdistance")
       (synopsis "Fast implementation of the edit distance (Levenshtein distance)")
       (description
@@ -1019,8 +1012,7 @@ text.")
                 "06vdikjvpj6qdb41d8wzfnyj44jpnknmlgbhbr1w215420lpb5xj"))))
     (build-system gnu-build-system)
     (inputs
-     `(("unzip" ,unzip)
-       ("perl" ,perl)))
+     (list unzip perl))
     (arguments
      `(#:tests? #f                      ; No tests.
        #:make-flags (list (string-append "BINDIR="
@@ -1132,7 +1124,7 @@ documents into plain text.")
          ;; no configure script
          (delete 'configure))))
     (inputs
-     `(("zlib" ,zlib)))
+     (list zlib))
     (home-page "https://github.com/dstosberg/odt2txt/")
     (synopsis "Converter from OpenDocument Text to plain text")
     (description "odt2txt is a command-line tool which extracts the text out
@@ -1146,6 +1138,40 @@ useful to extract content from OpenDocument spreadsheets (*.ods) and
 OpenDocument presentations (*.odp).")
     (license license:gpl2)))
 
+(define-public bibutils
+  (package
+    (name "bibutils")
+    (version "7.2")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://sourceforge/bibutils/"
+                                  "bibutils_" version "_src.tgz"))
+
+              (sha256
+               (base32
+                "1hxmwjjzw48w6hdh2x7ybkrhi1xngd55i67hrrd3wswa3vpql0kf"))))
+    (build-system gnu-build-system)
+    (arguments
+     (list #:configure-flags
+           #~(list "--install-dir" (string-append #$output "/bin")
+                   "--install-lib" (string-append #$output "/lib")
+                   "--dynamic")
+           #:make-flags
+           #~(list (string-append "CC=" #+(cc-for-target))
+                   (string-append "LDFLAGSIN=-Wl,-rpath=" #$output "/lib"))
+           #:test-target "test"
+           #:phases
+           '(modify-phases %standard-phases
+              (replace 'configure
+                (lambda* (#:key configure-flags #:allow-other-keys)
+                  ;; configure script is ill-formed, invoke it manually
+                  (apply invoke "sh" "./configure" configure-flags))))))
+    (home-page "https://bibutils.sourceforge.io/")
+    (synopsis "Convert between various bibliography formats")
+    (description "This package provides converters for various bibliography
+formats (e.g. Bibtex, RIS, ...) using a common XML intermediate.")
+    (license license:gpl2)))
+
 (define-public opencc
   (package
     (name "opencc")
@@ -1210,7 +1236,7 @@ OpenDocument presentations (*.odp).")
                (chdir "python")
                (mkdir-p dist)
                (setenv "PYTHONPATH"
-                       (string-append dist ":" (getenv "PYTHONPATH")))
+                       (string-append dist ":" (getenv "GUIX_PYTHONPATH")))
                (invoke "python" "setup.py" "install"
                        "--root=/" "--single-version-externally-managed"
                        (string-append "--prefix=" out))
@@ -1267,13 +1293,13 @@ such as ISO-2022-JP, Shift_JIS, EUC-JP, UTF-8, UTF-16 or UTF-32.")
 (define-public python-pandocfilters
   (package
     (name "python-pandocfilters")
-    (version "1.4.3")
+    (version "1.5.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pandocfilters" version))
        (sha256
-        (base32 "1sq675dg4barb5949xxz4d5gk2ly524hi1p1xgwb3d1l0nsznqxw"))))
+        (base32 "0f3sb8q85dbwliv46cc1yvpy4r00qp4by5x8751kn8vx6c1rarqb"))))
     (build-system python-build-system)
     (home-page "https://github.com/jgm/pandocfilters")
     (synopsis "Python module for writing Pandoc filters")
@@ -1347,3 +1373,83 @@ languages such as HTML, Markdown, Asciidoc, and reStructuredText.  The community
 around it also has a list of style guides implemented with Vale in
 @url{https://github.com/errata-ai/styles, their styles repo}.")
     (license license:expat)))
+
+(define-public utf-8-lineseparator
+  (package
+    (name "utf-8-lineseparator")
+    (version "cj3")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/pflanze/utf-8-lineseparator")
+                    (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1xnbcanqn5jr965gw9195ij6hz04clfm77m5776dysn9nykn20w1"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:make-flags
+       (list
+         (string-append "CC=" ,(cc-for-target)))
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure)
+         (replace 'install
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (bin (string-append out "/bin")))
+               (install-file "utf-8-lineseparator" bin)))))))
+    (home-page "https://github.com/pflanze/utf-8-lineseparator")
+    (synopsis "Line ending detection library")
+    (description
+"@code{utf-8-lineseparator} provides a tool to efficiently check text
+files for valid UTF-8 use and to report which line endings they use.")
+    (license license:expat)))
+
+(define-public csvdiff
+  (package
+    (name "csvdiff")
+    (version "1.4.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/aswinkarthik/csvdiff")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "0cd1ikxsypjqisfnmr7zix3g7x8p892w77086465chyd39gpk97b"))))
+    (build-system go-build-system)
+    (arguments
+     '(#:import-path "github.com/aswinkarthik/csvdiff"))
+    (propagated-inputs
+     (list go-golang-org-x-sys
+           go-github-com-stretchr-testify
+           go-github-com-spf13-cobra
+           go-github-com-spf13-afero
+           go-github-com-spaolacci-murmur3
+           go-github-com-mattn-go-colorable
+           go-github-com-fatih-color
+           go-github-com-cespare-xxhash
+           go-github-com-oneofone-xxhash))
+    (home-page "https://github.com/aswinkarthik/csvdiff")
+    (synopsis "Fast diff tool for comparing CSV files")
+    (description "@code{csvdiff} is a diff tool to compute changes between two
+CSV files.  It can compare CSV files with a million records in under 2
+seconds.  It is specifically suited for comparing CSV files dumped from
+database tables.  GNU Diff is orders of magnitude faster for comparing line by
+line.  @code{csvdiff} supports
+
+@itemize
+@item Selective comparison of fields in a row
+@item Specifying group of columns as primary-key to uniquely identify a row
+@item Ignoring columns
+@item Several output formats including colored git style output or
+JSON for post-processing
+@end itemize")
+    (license license:expat)))
+
+(define-public go-github-com-aswinkarthik-csvdiff
+  (deprecated-package "go-github-com-aswinkarthik-csvdiff" csvdiff))