diff options
| author | Ludovic Courtès <[email protected]> | 2015-05-01 15:03:30 +0200 |
|---|---|---|
| committer | Ludovic Courtès <[email protected]> | 2015-05-01 15:03:30 +0200 |
| commit | bf4af30bb2bce9dd5baf91f313ea35c55893eb10 (patch) | |
| tree | 94aa42278cd88cb50304e7fe34854399fc5255af /gnu/packages/bioinformatics.scm | |
| parent | 9e63a388d91f73e2b82f8c4688f131680fe5f165 (diff) | |
| parent | bc7d089a9cb5ce843730f863cc03195168a956b9 (diff) | |
Merge branch 'master' into core-updates
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 15 |
1 files changed, 10 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ccfda627f3..bcb7eba48f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -623,15 +623,20 @@ results. The FASTX-Toolkit tools perform some of these preprocessing tasks.") "13jaykc3y1x8y5nn9j8ljnb79s5y51kyxz46hdmvvjj6qhyympmf")))) (build-system cmake-build-system) (arguments - `(;; There is no test target, although there is a directory containing - ;; test data and scripts (launched by flexbar_validate.sh). - #:tests? #f - #:configure-flags (list + `(#:configure-flags (list (string-append "-DFLEXBAR_BINARY_DIR=" (assoc-ref %outputs "out") "/bin/")) #:phases - (alist-delete 'install %standard-phases))) + (alist-replace + 'check + (lambda* (#:key outputs #:allow-other-keys) + (setenv "PATH" (string-append + (assoc-ref outputs "out") "/bin:" + (getenv "PATH"))) + (chdir "../flexbar_v2.5_src/test") + (zero? (system* "bash" "flexbar_validate.sh"))) + (alist-delete 'install %standard-phases)))) (inputs `(("tbb" ,tbb) ("zlib" ,zlib))) |