diff options
Diffstat (limited to 'gnu/packages/parallel.scm')
| -rw-r--r-- | gnu/packages/parallel.scm | 133 |
1 files changed, 127 insertions, 6 deletions
diff --git a/gnu/packages/parallel.scm b/gnu/packages/parallel.scm index 05964cd038..6730772f24 100644 --- a/gnu/packages/parallel.scm +++ b/gnu/packages/parallel.scm @@ -9,7 +9,7 @@ ;;; Copyright © 2017, 2018 Rutger Helling <[email protected]> ;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <[email protected]> ;;; Copyright © 2018 Clément Lassieur <[email protected]> -;;; Copyright © 2019, 2020 Ludovic Courtès <[email protected]> +;;; Copyright © 2019, 2020, 2021 Ludovic Courtès <[email protected]> ;;; Copyright © 2020 Roel Janssen <[email protected]> ;;; Copyright © 2021 Stefan Reichör <[email protected]> ;;; @@ -31,6 +31,7 @@ (define-module (gnu packages parallel) #:use-module (guix download) #:use-module (guix git-download) + #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) #:use-module (guix build-system python) #:use-module ((guix licenses) #:prefix license:) @@ -41,8 +42,11 @@ #:use-module (gnu packages admin) #:use-module (gnu packages autotools) #:use-module (gnu packages base) + #:use-module (gnu packages check) + #:use-module (gnu packages flex) #:use-module (gnu packages freeipmi) #:use-module (gnu packages linux) + #:use-module (gnu packages maths) #:use-module (gnu packages mpi) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) @@ -57,14 +61,14 @@ (define-public parallel (package (name "parallel") - (version "20210322") + (version "20210922") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/parallel/parallel-" version ".tar.bz2")) (sha256 - (base32 "152np0jg4n94sbl2p2fzxjfnssiyp5sg7r5wx6s8p893b921pxwq")))) + (base32 "0rjd9636sgmnhaww2q8rbnpwhpq1aqg3df6rmpdm880zqi7skp6y")))) (build-system gnu-build-system) (arguments `(#:phases @@ -135,10 +139,37 @@ execution is also possible.") (home-page "https://github.com/leahneukirchen/xe") (license license:public-domain))) +(define-public xjobs + (package + (name "xjobs") + (version "20200726") + (source (origin + (method url-fetch) + (uri (string-append + "http://www.maier-komor.de/xjobs/xjobs-" + version ".tgz")) + (sha256 + (base32 + "0ay6gn43pnm7r1jamwgpycl67bjg5n87ncl27jb01w2x6x70z0i3")))) + (build-system gnu-build-system) + (arguments `(#:tests? #f)) ;; No tests + (native-inputs + `(("flex" ,flex) + ("which" ,which))) + (home-page "http://www.maier-komor.de/xjobs.html") + (properties `((release-monitoring-url . ,home-page))) + (synopsis + "Parallel execution of jobs with several useful options") + (description + "xjobs reads job descriptions line by line and executes them in +parallel. It limits the number of parallel executing jobs and starts new jobs +when jobs finish.") + (license license:gpl2+))) + (define-public slurm (package (name "slurm") - (version "20.11.3") + (version "20.11.7") (source (origin (method url-fetch) (uri (string-append @@ -146,7 +177,7 @@ execution is also possible.") version ".tar.bz2")) (sha256 (base32 - "1s70x6yh60sx63dgmp5rlhq8jcz7kxv9pk8gbs9v1jg8zps5h5bk")) + "1fdjihg1x7ks5l77yjv14a4mg6r0v8c3zk1dcxkhrhq3n4dc9nbs")) (modules '((guix build utils))) (snippet '(begin @@ -198,7 +229,12 @@ execution is also possible.") ,@(if (target-64bit?) '() '("--enable-deprecated"))) #:phases (modify-phases %standard-phases - (add-after 'unpack 'autoconf + (add-after 'unpack 'patch-plugin-linker-flags + (lambda _ + (substitute* (find-files "src/plugins/" "Makefile.in") + (("_la_LDFLAGS = ") + "_la_LDFLAGS = ../../../api/libslurm.la ")))) + (add-after 'patch-plugin-linker-flags 'autoconf (lambda _ (invoke "autoconf"))) ;configure.ac was patched (add-after 'install 'install-libpmi (lambda _ @@ -345,3 +381,88 @@ and output captured in the notebook. Whatever arguments are accepted by a SLURM command line executable are also accepted by the corresponding magic command---e.g., @code{%salloc}, @code{%sbatch}, etc.") (license license:bsd-3)))) + +(define-public pthreadpool + ;; This repository has only one tag, 0.1, which is older than what users + ;; such as XNNPACK expect. + (let ((commit "1787867f6183f056420e532eec640cba25efafea") + (version "0.1") + (revision "1")) + (package + (name "pthreadpool") + (version (git-version version revision commit)) + (home-page "https://github.com/Maratyszcza/pthreadpool") + (source (origin + (method git-fetch) + (uri (git-reference (url home-page) (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "02hdvxfn5krw8zivkgjx3b4rk9p02yr4mpdjlp75lsv6z1xf5yrx")) + (patches (search-patches "pthreadpool-system-libraries.patch")))) + (build-system cmake-build-system) + (arguments '(#:configure-flags '("-DBUILD_SHARED_LIBS=ON"))) + (inputs + `(("googletest" ,googletest) + ("googlebenchmark" ,googlebenchmark) + ("fxdiv" ,fxdiv))) + (synopsis "Efficient thread pool implementation") + (description + "The pthreadpool library implements an efficient and portable thread +pool, similar to those implemented by OpenMP run-time support libraries for +constructs such as @code{#pragma omp parallel for}, with additional +features.") + (license license:bsd-2)))) + +(define-public cpuinfo + ;; There's currently no tag on this repo. + (let ((version "0.0") + (revision "1") + (commit "866ae6e5ffe93a1f63be738078da94cf3005cce2")) + (package + (name "cpuinfo") + (version (git-version version revision commit)) + (home-page "https://github.com/pytorch/cpuinfo") + (source (origin + (method git-fetch) + (uri (git-reference (url home-page) (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1lmsf4bpkm19a31i40qwcjn46qf7prggziv4pbsi695bkx5as71p")) + (patches (search-patches "cpuinfo-system-libraries.patch")))) + (build-system cmake-build-system) + (arguments '(#:configure-flags '("-DBUILD_SHARED_LIBS=ON"))) + (inputs + `(("googletest" ,googletest) + ("googlebenchmark" ,googlebenchmark))) + (synopsis "C/C++ library to obtain information about the CPU") + (description + "The cpuinfo library provides a C/C++ and a command-line interface to +obtain information about the CPU being used: supported instruction set, +processor name, cache information, and topology information.") + (license license:bsd-2)))) + +(define-public psimd + ;; There is currently no tag in this repo. + (let ((commit "072586a71b55b7f8c584153d223e95687148a900") + (version "0.0") + (revision "1")) + (package + (name "psimd") + (version (git-version version revision commit)) + (home-page "https://github.com/Maratyszcza/Psimd") + (source (origin + (method git-fetch) + (uri (git-reference (url home-page) (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "16mslhvqs0gpqbg7kkq566a8gkn58cgjpqca8ljj9qcv5mk9apwm")))) + (build-system cmake-build-system) + (arguments '(#:tests? #f)) ;there are no tests + (synopsis "Portable 128-bit SIMD intrinsics") + (description + "This header-only C++ library provides a portable interface to +single-instruction multiple-data (SIMD) intrinsics.") + (license license:expat)))) |