diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 1258 |
1 files changed, 808 insertions, 450 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index acc3273831..8d7425e4c1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015-2023 Ricardo Wurmus <[email protected]> +;;; Copyright © 2015-2024 Ricardo Wurmus <[email protected]> ;;; Copyright © 2015 Andreas Enge <[email protected]> ;;; Copyright © 2015, 2016 Pjotr Prins <[email protected]> ;;; Copyright © 2016, 2017 Ben Woodcroft <[email protected]> @@ -11,7 +11,7 @@ ;;; Copyright © 2018 Sandeep Subramanian <[email protected]> ;;; Copyright © 2018 Charlie Ritter <[email protected]> ;;; Copyright © 2018 Konrad Hinsen <[email protected]> -;;; Copyright © 2018, 2020-2023 Mădălin Ionel Patrașcu <[email protected]> +;;; Copyright © 2018, 2020-2024 Mădălin Ionel Patrașcu <[email protected]> ;;; Copyright © 2018 Laura Lazzati <[email protected]> ;;; Copyright © 2018 Leo Famulari <[email protected]> ;;; Copyright © 2018 Marius Bakke <[email protected]> @@ -35,7 +35,7 @@ ;;; Copyright © 2020 Aniket Patil <[email protected]> ;;; Copyright © 2021 Marcel Schilling <[email protected]> ;;; Copyright © 2021 Guillaume Le Vaillant <[email protected]> -;;; Copyright © 2022, 2023 Navid Afkhami <[email protected]> +;;; Copyright © 2022-2024 Navid Afkhami <[email protected]> ;;; Copyright © 2022 Greg Hogan <[email protected]> ;;; ;;; This file is part of GNU Guix. @@ -62,6 +62,7 @@ #:use-module (guix utils) #:use-module (guix build-system gnu) #:use-module (guix build-system r) + #:use-module (gnu packages) #:use-module (gnu packages algebra) #:use-module (gnu packages autotools) #:use-module (gnu packages base) @@ -115,16 +116,35 @@ #:use-module (gnu packages xml) #:use-module (gnu packages xorg)) +(define-public r-abbreviate + (package + (name "r-abbreviate") + (version "0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "abbreviate" version)) + (sha256 + (base32 "1cvjdbi17qz8gr5898zchm5fyz4n51z66lwps25v8a9mhwab8imi")))) + (properties `((upstream-name . "abbreviate"))) + (build-system r-build-system) + (home-page "https://github.com/sigbertklinke/abbreviate") + (synopsis "Readable string abbreviation") + (description + "This package abbreviates strings to a specified minimum number of +characters, such that the strings remain unique (if they originally were).") + (license license:gpl3))) + (define-public r-aer (package (name "r-aer") - (version "1.2-10") + (version "1.2-12") (source (origin (method url-fetch) (uri (cran-uri "AER" version)) (sha256 (base32 - "1p6vxr0220lim5i4gwsvphqrfd65zbs8h3qydz4gipca9asmy2k5")))) + "11pas7lglcw1h5649bgab13g8xlnx109pc2aqphwc3fdgvqv1ism")))) (properties `((upstream-name . "AER"))) (build-system r-build-system) (propagated-inputs @@ -191,6 +211,50 @@ estimating equations} (GEE) or @dfn{generalized linear mixed effect models} (GLMM).") (license license:gpl2+))) +(define-public r-asioheaders + (package + (name "r-asioheaders") + (version "1.22.1-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "AsioHeaders" version)) + (sha256 + (base32 "192qxayrpvi02wrqq2h5cjc92aaxrsgw7z32r8qk5imqg3mc0a8n")))) + (properties `((upstream-name . "AsioHeaders"))) + (build-system r-build-system) + (home-page "https://github.com/eddelbuettel/asioheaders") + (synopsis "Asio C++ header files") + (description + "Asio is a cross-platform C++ library for network and low-level I/O +programming that provides developers with a consistent asynchronous model +using a modern C++ approach. It is also included in Boost but requires +linking when used with Boost. Standalone it can be used header-only (provided +a recent compiler). Asio is written and maintained by Christopher +M. Kohlhoff, and released under the Boost Software License', Version 1.0.") + (license license:boost1.0))) + +(define-public r-box + (package + (name "r-box") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "box" version)) + (sha256 + (base32 "00g5ik3f6260m38jl8k4s8nycmy7mzdwr7qslrl66phpg84xzmln")))) + (properties `((upstream-name . "box"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://klmr.me/box/") + (synopsis "Write reusable, composable and modular R code") + (description + "This package provides a modern module system for R. Organize code into +hierarchical, composable, reusable modules, and use it effortlessly across +projects via a flexible, declarative dependency loading syntax.") + (license license:expat))) + (define-public r-brio (package (name "r-brio") @@ -390,6 +454,27 @@ match datasets quickly. It also contains functions for various cosmological calculations.") (license license:gpl3))) +(define-public r-cetcolor + (package + (name "r-cetcolor") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "cetcolor" version)) + (sha256 + (base32 "0kygdcr9ldanr0z4qpygwh0padki7s2ad0j6myky601g4228z79q")))) + (properties `((upstream-name . "cetcolor"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://github.com/coatless-rpkg/cetcolor") + (synopsis "CET perceptually uniform color maps") + (description + "This package provides a collection of perceptually uniform color maps +made by Peter Kovesi (2015) \"Good Colour Maps: How to Design Them\" +<arXiv:1509.03700> at the Centre for Exploration Targeting (CET).") + (license license:cc-by-sa4.0))) + ;; The package sources include multiple non-minified JavaScript files and the ;; v5.1.0 variant of d3.js. The d3.js file is not minified. (define-public r-chromomap @@ -452,13 +537,13 @@ labels on the node can also be achieved.") (define-public r-collapse (package (name "r-collapse") - (version "2.0.9") + (version "2.0.10") (source (origin (method url-fetch) (uri (cran-uri "collapse" version)) (sha256 - (base32 "0c9cz1dqrgd3gss9cr40a3rh014av0w8gfhq35lq1knyik6bhk28")))) + (base32 "0xary3xlkkhb3izbwzsk5q660hi00srkv95c0r36isr5bgsirfr1")))) (properties `((upstream-name . "collapse"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -979,16 +1064,16 @@ samples) are easily visualized.") (define-public r-ggfittext (package (name "r-ggfittext") - (version "0.10.1") + (version "0.10.2") (source (origin (method url-fetch) (uri (cran-uri "ggfittext" version)) (sha256 (base32 - "1z06q55igv6nibc72hll93cpp80mfg3yqfqbi967832nfj7wll7a")))) + "0glc4wh8flryv4mydzgk8a3lj7dzg2ip45gsxr472jgbg56a95mp")))) (properties `((upstream-name . "ggfittext"))) (build-system r-build-system) - (propagated-inputs (list r-ggplot2 r-gridtext r-shades r-stringi)) + (propagated-inputs (list r-cli r-ggplot2 r-gridtext r-shades r-stringi)) (native-inputs (list r-knitr)) (home-page "https://wilkox.org/ggfittext/") (synopsis "Ggfittext is a ggplot2 extension for fitting text into boxes") @@ -1410,6 +1495,44 @@ matrix decomposition, sparse principal components analysis, and sparse canonical correlation analysis.") (license license:gpl2+))) +(define-public r-rpresto + (package + (name "r-rpresto") + (version "1.4.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "RPresto" version)) + (sha256 + (base32 "1q8c3h328iwscnayxj8qc71s2hkqdqwnpf38kn3zz3ks66qzjf8c")))) + (properties `((upstream-name . "RPresto"))) + (build-system r-build-system) + (propagated-inputs + (list r-bit64 + r-dbi + r-dbplyr + r-dplyr + r-httr + r-jsonlite + r-lifecycle + r-lubridate + r-openssl + r-progress + r-purrr + r-rlang + r-stringi + r-tibble + r-vctrs)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/prestodb/RPresto") + (synopsis "DBI connector to Presto") + (description + "This package implements a DBI compliant interface to +@url{https://prestodb.io/, Presto}, a distributed SQL query engine for running +interactive analytic queries against data sources of all sizes ranging from +gigabytes to petabytes.") + (license license:bsd-3))) + (define-public r-prettydoc (package (name "r-prettydoc") @@ -1897,14 +2020,14 @@ similar rank-based tests for equal probability distributions due to Neuhauser (define-public r-v8 (package (name "r-v8") - (version "4.4.1") + (version "4.4.2") (source (origin (method url-fetch) (uri (cran-uri "V8" version)) (sha256 (base32 - "129spn531m9arz7v8vyfsrvc69hg0w39fdnhjxrcrww37l9xcvav")))) + "0w4n794l4f7hwwjr83112zf3cjx72q6ak0fn45qm6pqg8brkbg77")))) (properties `((upstream-name . "V8") (updater-extra-inputs . ("libnode")))) @@ -2047,13 +2170,13 @@ size and can be easily tested locally before being sent to a remote.") (define-public r-climaemet (package (name "r-climaemet") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "climaemet" version)) (sha256 (base32 - "1276pxs3w610v6m8j5h206xxgwvm2wwma73jpvn7s3rcxycs32m5")))) + "1h3j8w6m568swa6qkfg107wvfdfg816p92y8ayss6acrrmrvax89")))) (properties `((upstream-name . "climaemet"))) (build-system r-build-system) (propagated-inputs @@ -2469,14 +2592,14 @@ scale-sensitive information.") (define-public r-ggvenndiagram (package (name "r-ggvenndiagram") - (version "1.5.0") + (version "1.5.2") (source (origin (method url-fetch) (uri (cran-uri "ggVennDiagram" version)) (sha256 (base32 - "0ngvvmz2mxh4v98wg3xqpmz1p1cpk3qsdvszcjzb1yhhway211a5")))) + "0hzjbpd3f3zn169s5nvnv7b4wlrwdn3r0pk0vgkdnhchl75g0qni")))) (properties `((upstream-name . "ggVennDiagram"))) (build-system r-build-system) (propagated-inputs @@ -2587,13 +2710,13 @@ respecting the grammar of its graphics paradigm.") (define-public r-ggside (package (name "r-ggside") - (version "0.2.3") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "ggside" version)) (sha256 (base32 - "0qj564rqxw8fn5h00wwmkvk6p3x60r64gpvxw9yrb5lvcykgsj8q")))) + "0mx6j9wi54inklmyydcqm0ahbx0b6c6y4sfh2awqsbgwigc3056p")))) (properties `((upstream-name . "ggside"))) (build-system r-build-system) (propagated-inputs @@ -2644,14 +2767,14 @@ organisms via the @code{g:Profiler} toolkit.") (define-public r-gprofiler2 (package (name "r-gprofiler2") - (version "0.2.2") + (version "0.2.3") (source (origin (method url-fetch) (uri (cran-uri "gprofiler2" version)) (sha256 (base32 - "1zbfvpb4qqj6vipz0ps4pyy14h6rc4jaqfa8q4zrbhi5vvw9805r")))) + "1klmg0zj5kr663dzgfzpy1yn161znmjcjq8pl3rahjh2lwaahbmh")))) (properties `((upstream-name . "gprofiler2"))) (build-system r-build-system) (propagated-inputs @@ -2926,6 +3049,68 @@ method for preprocessing data for conos.") palettes, color maps, and tools to evaluate them.") (license license:gpl3))) +(define-public r-papaja + (package + (name "r-papaja") + (version "0.1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "papaja" version)) + (sha256 + (base32 "08ydk9fws5x37q120cdjdx1dsib0y2g9bp826vxzxcaymlwx3dl7")))) + (properties `((upstream-name . "papaja"))) + (build-system r-build-system) + (propagated-inputs + (list r-bookdown + r-broom + r-glue + r-knitr + r-rmarkdown + r-rmdfiltr + r-tinylabels + r-yaml + r-zip + texlive-amsmath + texlive-apa6 + texlive-booktabs + texlive-caption + texlive-csquotes + texlive-endfloat + texlive-environ + texlive-etoolbox + texlive-fancyhdr + texlive-framed + texlive-geometry + texlive-graphics + texlive-grfext + texlive-hyperref + texlive-lineno + texlive-multirow + texlive-threeparttable + texlive-threeparttablex + texlive-titlesec + texlive-tools + texlive-trimspaces + texlive-was ; upgreek.sty + texlive-xcolor + texlive-xpatch + (texlive-updmap.cfg (list + texlive-amsfonts + texlive-times + texlive-lm)))) + (native-inputs (list r-knitr r-r-rsp)) + (home-page "https://github.com/crsh/papaja") + (synopsis + "Prepare American Psychological Association journal articles with R Markdown") + (description + "This package provides tools to create dynamic, submission-ready +manuscripts, which conform to American Psychological Association manuscript +guidelines. It provides R Markdown document formats for manuscripts (PDF and +Word) and revision letters (PDF). Helper functions facilitate reporting +statistical analyses or create publication-ready tables and plots.") + (license license:expat))) + (define-public r-paralleldist (package (name "r-paralleldist") @@ -3272,13 +3457,13 @@ are not used.") (define-public r-ga (package (name "r-ga") - (version "3.2.3") + (version "3.2.4") (source (origin (method url-fetch) (uri (cran-uri "GA" version)) (sha256 - (base32 "0q0br75zklnp0g3j98x6lll5fhyayxqzaqs3hc2z39s2imwi2fpb")))) + (base32 "1gc1n2xdzrkc9cvrm6a50c9xpwvf0isdgvs1qpm8x1afacw6d7z5")))) (properties `((upstream-name . "GA"))) (build-system r-build-system) (propagated-inputs @@ -3468,13 +3653,13 @@ the group sizes are small.") (define-public r-shadowtext (package (name "r-shadowtext") - (version "0.1.2") + (version "0.1.3") (source (origin (method url-fetch) (uri (cran-uri "shadowtext" version)) (sha256 (base32 - "0zdfidrcnmxmfhngv86ppxrjmpmz9kl78l4yfah2lc5vgmrlwg15")))) + "109bq4d3j7vw6rcj9cjby955bdzgghkxwvwrb974xqq16kzzc6l6")))) (properties `((upstream-name . "shadowtext"))) (build-system r-build-system) (propagated-inputs @@ -3637,13 +3822,13 @@ noisy black-box functions.") (define-public r-tgstat (package (name "r-tgstat") - (version "2.3.25") + (version "2.3.27") (source (origin (method url-fetch) (uri (cran-uri "tgstat" version)) (sha256 - (base32 "07hdw3n4l88nr0x2a2qnjich4cfihgd0fk65ar3crgdahjcv9vn4")))) + (base32 "0scljimskda5hinkb4y5va9c9qlqwf6k6zrm20bjk133710qsscb")))) (properties `((upstream-name . "tgstat"))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -3757,13 +3942,13 @@ cross-platform graphical user interface toolkit} widget.") (define-public r-rvest (package (name "r-rvest") - (version "1.0.3") + (version "1.0.4") (source (origin (method url-fetch) (uri (cran-uri "rvest" version)) (sha256 - (base32 "07hws9infwchy19smrcd9m6c0jii0bdn335yxqk3ramgj5ryyrd4")))) + (base32 "19lw0jk8d8x88z247hz761gwbx9f5n3yqnv63mn7pkwl55mpqw3x")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -3774,7 +3959,6 @@ cross-platform graphical user interface toolkit} widget.") r-rlang r-selectr r-tibble - r-withr r-xml2)) (native-inputs (list r-knitr)) @@ -3786,6 +3970,25 @@ designed to work with @code{magrittr} to make it easy to express common web scraping tasks, inspired by libraries like @code{BeautifulSoup}.") (license license:gpl3))) +(define-public r-secretbase + (package + (name "r-secretbase") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "secretbase" version)) + (sha256 + (base32 "1wgbk16by9w933cff5ybb2sa0ndgj3sv9ahr2r1843vgqiyvx2xi")))) + (properties `((upstream-name . "secretbase"))) + (build-system r-build-system) + (home-page "https://shikokuchuo.net/secretbase/") + (synopsis "Cryptographic Hash and Extendable-Output Functions") + (description + "This package provides implementations of the SHA-3 cryptographic hash +and SHAKE256 extendable-output functions (XOF).") + (license license:gpl3+))) + (define-public r-selectr (package (name "r-selectr") @@ -3925,17 +4128,17 @@ same time tries to group instances from the same class together.") (define-public r-callr (package (name "r-callr") - (version "3.7.3") + (version "3.7.5") (source (origin (method url-fetch) (uri (cran-uri "callr" version)) (sha256 (base32 - "0knh5yxhxwjz96kbjrq524w4j8cac10k6mghhmblq79s0zgzwysn")))) + "0b277fvjglnqrjmsm4ilhqrp9sjag0r9mxls2h9v1m94ff7ix88q")))) (build-system r-build-system) (propagated-inputs - (list r-r6 r-processx)) + (list r-processx r-r6)) (home-page "https://github.com/r-lib/callr#readme") (synopsis "Call R from R") (description @@ -4194,13 +4397,13 @@ Zucchini.") (define-public r-httpuv (package (name "r-httpuv") - (version "1.6.13") + (version "1.6.14") (source (origin (method url-fetch) (uri (cran-uri "httpuv" version)) (sha256 (base32 - "0prvd2mv4rliqm0ldaldd6yjxy04qvxnqyhfxlk2c1lanmxzjvnb")) + "10fi7j8rpa55l7bdygxl608i6f927ws2y1lv4qz8g6dx4spaq9j0")) (modules '((guix build utils))) ;; Cannot unbundle http-parser, because it contains local ;; modifications. @@ -4355,13 +4558,13 @@ in systems and applications.") (define-public r-servr (package (name "r-servr") - (version "0.28") + (version "0.29") (source (origin (method url-fetch) (uri (cran-uri "servr" version)) (sha256 (base32 - "10nl6aal2kr0k1j7yfpggcxpjxby6z5hhc6wb4nkqhy2w5qi6g26")))) + "1zpwvqg9jpvrn8xl9yrlbd5mpxprdgw6v599d6f06rdgh2j537m3")))) (build-system r-build-system) (propagated-inputs (list r-httpuv r-jsonlite r-mime r-xfun)) @@ -5854,13 +6057,13 @@ coordinates.") (define-public r-gensa (package (name "r-gensa") - (version "1.1.12") + (version "1.1.14") (source (origin (method url-fetch) (uri (cran-uri "GenSA" version)) (sha256 (base32 - "0m5y0hmhcc40d9a24pz5iqw5diip7sn7bih5s01x5dvqqasnx6vk")))) + "0dv83fm31ksbf7q1rbg9kz7v8h4zp34xv7adz15c1lv61sxmbr36")))) (properties `((upstream-name . "GenSA"))) (build-system r-build-system) (home-page "https://cran.r-project.org/package=GenSA") @@ -6147,13 +6350,13 @@ some utility functions.") (define-public r-paletteer (package (name "r-paletteer") - (version "1.5.0") + (version "1.6.0") (source (origin (method url-fetch) (uri (cran-uri "paletteer" version)) (sha256 (base32 - "1mm0k651356cjasv7wibscw82m1k8mwpp4xafpv66dsq24h28ikl")))) + "1n4jim2fgyff6c5mjridq92jgvr5m2qgwfsgvhyj1pwk1hq21pmm")))) (properties `((upstream-name . "paletteer"))) (build-system r-build-system) (propagated-inputs (list r-prismatic r-rematch2 r-rlang r-rstudioapi)) @@ -6193,16 +6396,17 @@ Station Long Term Ecological Research (LTER) Program.") (define-public r-pastecs (package (name "r-pastecs") - (version "1.3.21") + (version "1.4.2") (source (origin (method url-fetch) (uri (cran-uri "pastecs" version)) (sha256 (base32 - "0z4dic94ar646w7zc2ggi5hgvf2qnznsani94c5pyql8zspz47lc")))) + "1y3nngdmslbs1rls0n2nbx8jpp9z3nvv11w1z6rff6v0ky05ddj3")))) (build-system r-build-system) (propagated-inputs (list r-boot)) + (native-inputs (list r-knitr)) (home-page "https://github.com/phgrosjean/pastecs") (synopsis "Analysis of space-time ecological series") (description @@ -6294,13 +6498,13 @@ print, summary, plot, update, etc. (define-public r-ps (package (name "r-ps") - (version "1.7.5") + (version "1.7.6") (source (origin (method url-fetch) (uri (cran-uri "ps" version)) (sha256 - (base32 "0knblkdrdqbmcv9zmp5096k4vfvvbjzl6zizjyabk5spqpikmg0s")))) + (base32 "1lkd0mxr65sfh47dig0ck530kmsaxxqxdfy7ji59h78y7py5zhsj")))) (build-system r-build-system) (home-page "https://ps.r-lib.org") (synopsis "List, query, and manipulate system processes") @@ -6497,14 +6701,14 @@ functions and compiled functions callable by other packages.") (define-public r-rcppthread (package (name "r-rcppthread") - (version "2.1.6") + (version "2.1.7") (source (origin (method url-fetch) (uri (cran-uri "RcppThread" version)) (sha256 (base32 - "1997ka0dd36d79fb4crqq0ar3bgzdv4mw5hd6v2pmq7555g0qiz9")))) + "1s5v4fa59gmjcd0cn7q7zy67ww9zwnly4apbgr87x9qkzgzbmpl8")))) (properties `((upstream-name . "RcppThread"))) (build-system r-build-system) (native-inputs (list r-r-rsp)) @@ -6667,14 +6871,14 @@ on (non-orthogonal) variable vectors in scatterplots and biplots.") (define-public r-shape (package (name "r-shape") - (version "1.4.6") + (version "1.4.6.1") (source (origin (method url-fetch) (uri (cran-uri "shape" version)) (sha256 (base32 - "0yqbrrx2ywmfl99s6d1n6jblc63k1mxbiqyv8y0kq8jws1g3w45r")))) + "1912znpk85j8c01s4m2f7x8rcqwski8b5n7g70cczmkzk47vvya3")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/shape") (synopsis "Functions for plotting graphical shapes") @@ -6707,14 +6911,14 @@ validation and filtering on the values, making options invisible or private.") (define-public r-circlize (package (name "r-circlize") - (version "0.4.15") + (version "0.4.16") (source (origin (method url-fetch) (uri (cran-uri "circlize" version)) (sha256 (base32 - "1iswb7dy08as3pbzxvhx5qlsbnwvp79nwg8m158nfz7y2d9xa0nn")))) + "0rqbcmmp4h1jjl0y59bzn6k8kywjdqwvp0ajkqxd21j9f33k5p0n")))) (build-system r-build-system) (propagated-inputs (list r-colorspace r-globaloptions r-shape)) @@ -6759,18 +6963,19 @@ graphics packages that comes with the base installation.") (define-public r-ctrdata (package (name "r-ctrdata") - (version "1.16.0") + (version "1.17.2") (source (origin (method url-fetch) (uri (cran-uri "ctrdata" version)) (sha256 (base32 - "13n5c7znlxkwqlv04vd5ynbkbq8f28dzbr3y66966971xnf7yhsm")))) + "0xsi3yc08gg9h5zh9h9r2d2ixv36f6wblmkcv51h9nfmawjyd8f8")))) (properties `((upstream-name . "ctrdata"))) (build-system r-build-system) (propagated-inputs (list r-clipr r-curl + r-digest r-dplyr r-httr r-jqr @@ -6838,13 +7043,13 @@ provided for interactively exploring the constructed data.") (define-public r-powerlaw (package (name "r-powerlaw") - (version "0.70.6") + (version "0.80.0") (source (origin (method url-fetch) (uri (cran-uri "poweRlaw" version)) (sha256 - (base32 "14d1myxllvm1grnfiszzzxaiqpb2jpmsi19wq70r8r2wki293h7g")))) + (base32 "1jvj2x22h6px1rcxmpz9h3x8r4486sb8zl3hjrsdxqa73ypmcdbi")))) (properties `((upstream-name . "poweRlaw"))) (build-system r-build-system) (propagated-inputs @@ -7201,14 +7406,14 @@ package also provides a C++ API, that works with or without Rcpp.") (define-public r-ggally (package (name "r-ggally") - (version "2.2.0") + (version "2.2.1") (source (origin (method url-fetch) (uri (cran-uri "GGally" version)) (sha256 (base32 - "1pc0mcxhj3mz8ac6r1sqfxw1wkamikjal54z7pb1mairsr3hpqnw")))) + "1il6yphqxcyj1039imi8pn6ygyni24daz8ljxxp3z9inb5k2dcwb")))) (properties `((upstream-name . "GGally"))) (build-system r-build-system) (inputs @@ -7260,13 +7465,13 @@ most popular ones.") (define-public r-sp (package (name "r-sp") - (version "2.1-2") + (version "2.1-3") (source (origin (method url-fetch) (uri (cran-uri "sp" version)) (sha256 - (base32 "1i8d7sbccnhiw7pkmg89v98abjad45psyxccz1acbq4z5ykb9nxz")))) + (base32 "0m44qr2l8xmqbgi95h200bwy9ca8jihiqzfarws1p09lwmr954zs")))) (build-system r-build-system) (propagated-inputs (list r-lattice)) @@ -7358,6 +7563,29 @@ installing the entire GSL.") a variety of different samplers.") (license license:expat))) +(define-public r-rmdfiltr + (package + (name "r-rmdfiltr") + (version "0.1.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "rmdfiltr" version)) + (sha256 + (base32 "0llnn4pdfznidalm4f7fpyxbhzsqv1096fkbsl1pgf4f7ll6w7a7")))) + (properties `((upstream-name . "rmdfiltr"))) + (build-system r-build-system) + (inputs (list pandoc)) + (propagated-inputs (list r-assertthat r-rmarkdown)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/crsh/rmdfiltr") + (synopsis "Lua filters for R Markdown") + (description + "This package provides a collection of Lua filters that extend the +functionality of R Markdown templates (e.g., count words or post-process +citations).") + (license license:expat))) + (define-public r-rmtstat (package (name "r-rmtstat") @@ -7414,13 +7642,13 @@ provides an interactive R manager and worker environment.") (define-public r-rmumps (package (name "r-rmumps") - (version "5.2.1-26") + (version "5.2.1-27") (source (origin (method url-fetch) (uri (cran-uri "rmumps" version)) (sha256 - (base32 "16ii9yg20xkxhsqszay42s4cr29k74av5d9d1d28kmpw6cjh2r2c")))) + (base32 "08zvmbhjgcrlgdhfn8ssajy8vnwcyaw90zgc0v1ncn95z310gpl3")))) (properties `((upstream-name . "rmumps"))) (build-system r-build-system) (inputs (list zlib)) @@ -7615,14 +7843,14 @@ software.") (define-public r-extremes (package (name "r-extremes") - (version "2.1-3") + (version "2.1-4") (source (origin (method url-fetch) (uri (cran-uri "extRemes" version)) (sha256 (base32 - "0h1w177vz3z58vbqrfbiqapf9z2qsd7gcbv8fnbyn0i5akfz1k71")))) + "12mphdq9zi0r07x3gpj5dg4687hwnjx42d9a392rjbbsgvv2r96f")))) (properties `((upstream-name . "extRemes"))) (build-system r-build-system) (propagated-inputs @@ -7863,14 +8091,14 @@ transportation problems.") (define-public r-limsolve (package (name "r-limsolve") - (version "1.5.7") + (version "1.5.7.1") (source (origin (method url-fetch) (uri (cran-uri "limSolve" version)) (sha256 (base32 - "1waqkkipks8h4h5lpn0xw0077hwpz963q42h7xv6f70p07zncxq4")))) + "14jvx0sjjdsm6fxvdck648h12sl4cmy8sgw8jx1744pmpcbm5555")))) (properties `((upstream-name . "limSolve"))) (build-system r-build-system) (propagated-inputs @@ -8017,6 +8245,33 @@ for Environmental Statistics\" (Millard, 2013, Springer, ISBN @url{https://link.springer.com/book/10.1007/978-1-4614-8456-1}).") (license license:gpl3+))) +(define-public r-suntools + (package + (name "r-suntools") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "suntools" version)) + (sha256 + (base32 "1qlp0q2ckqg5v3yvbr98k3nr9awgg7ks0l1103nqvm1ssadv7ds2")))) + (properties `((upstream-name . "suntools"))) + (build-system r-build-system) + (propagated-inputs (list r-sf)) + (home-page "https://github.com/adokter/suntools/") + (synopsis + "Calculate sun position, sunrise, sunset, solar noon and twilight") + (description + "This package provides a set of convenient functions for calculating +sun-related information, including the sun's position (elevation and azimuth), +and the times of sunrise, sunset, solar noon, and twilight for any given +geographical location on Earth. These calculations are based on equations +provided by the National Oceanic & Atmospheric Administration (NOAA) as +described in \"Astronomical Algorithms\" by Jean Meeus (1991). A resource for +researchers and professionals working in fields such as climatology, biology, +and renewable energy.") + (license license:gpl3+))) + (define-public r-suppdists (package (name "r-suppdists") @@ -8122,13 +8377,13 @@ contexts.") (define-public r-cvxr (package (name "r-cvxr") - (version "1.0-11") + (version "1.0-12") (source (origin (method url-fetch) (uri (cran-uri "CVXR" version)) (sha256 (base32 - "0alp1g4bszxqcrjbn54bz1zswg8y10372fwwlbi0jjazycw9cap9")))) + "1igzi231rkqi7pc5ak8b29a8x7fry0yqs8vg2m4i5ab9jdm8fsp7")))) (properties `((upstream-name . "CVXR"))) (build-system r-build-system) (propagated-inputs @@ -8328,13 +8583,13 @@ methods.") (define-public r-timechange (package (name "r-timechange") - (version "0.2.0") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "timechange" version)) (sha256 (base32 - "1wgpab9dvmvkfb1p1arj0knb8qal9hazbhx5jkpxl8r10l420q1x")))) + "1d26mr3avw6bpx786k223bnylzqr7z1h7rrjc38pi5db2iahnp6q")))) (properties `((upstream-name . "timechange"))) (build-system r-build-system) (propagated-inputs (list r-cpp11)) @@ -8397,13 +8652,13 @@ dimensioned arrays.") (define-public r-magicaxis (package (name "r-magicaxis") - (version "2.2.14") + (version "2.4.5") (source (origin (method url-fetch) (uri (cran-uri "magicaxis" version)) (sha256 - (base32 "1gqnivn6qjmf7axdi0pff6a40clklbipcr6qvm6ivzqbqhpbcb7v")))) + (base32 "04wj0g345mlndd1s7v7klxldxlp293xdgjyrnfpzxckg59804j3d")))) (properties `((upstream-name . "magicaxis"))) (build-system r-build-system) (propagated-inputs @@ -8686,14 +8941,14 @@ problems as well as resampling based estimators of prediction error.") (define-public r-psych (package (name "r-psych") - (version "2.3.12") + (version "2.4.1") (source (origin (method url-fetch) (uri (cran-uri "psych" version)) (sha256 (base32 - "0q8qms180gxk7wlm8li3j5r8rwniqj01xfm00gkvkc8q9djcsm8p")))) + "08ip2m91c6hinva18zv575cn6w14pnjc503m1gisrg65c3z3f69b")))) (build-system r-build-system) (propagated-inputs (list r-lattice r-mnormt r-nlme)) @@ -8778,14 +9033,14 @@ provides a one-row summary of model-level statistics.") (define-public r-recipes (package (name "r-recipes") - (version "1.0.9") + (version "1.0.10") (source (origin (method url-fetch) (uri (cran-uri "recipes" version)) (sha256 (base32 - "146p9ij2i4rmzaa5v76lm7z8iaw5wqb47i9cqf4a0q7xsgqvf6hi")))) + "1m4v9j7by0w5avqljmwck1jsgjgwc8rsby0affa5zii3xkvvvifg")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -9394,14 +9649,14 @@ acceptance regions, log-ratio plots and Q-Q plots.") (define-public r-sm (package (name "r-sm") - (version "2.2-5.7.1") + (version "2.2-6.0") (source (origin (method url-fetch) (uri (cran-uri "sm" version)) (sha256 (base32 - "0mql7rlm8wkdwmx1lv7pscdk9ibvsdpfdv8bpaz1hv2gn4pc637a")))) + "0q8xav1alammiyiw2p8y0qq94ag5rln910jry8q3sb2p38ly79i7")))) (build-system r-build-system) (native-inputs (list gfortran)) (home-page "http://www.stats.gla.ac.uk/~adrian/sm/") @@ -9554,14 +9809,14 @@ training models for classification or ranking.") (define-public r-xts (package (name "r-xts") - (version "0.13.1") + (version "0.13.2") (source (origin (method url-fetch) (uri (cran-uri "xts" version)) (sha256 (base32 - "0pc23na5lrzfchd4i22p035y1krjpddi0iw6i78lhbhns330ff9c")))) + "1yqx1x395hvdav1fvmpwrfm8sir398ky1bi0x5zsm7acbkv91maa")))) (build-system r-build-system) (propagated-inputs (list r-zoo)) (home-page "https://github.com/joshuaulrich/xts") @@ -9604,14 +9859,14 @@ where possible.") (define-public r-laeken (package (name "r-laeken") - (version "0.5.2") + (version "0.5.3") (source (origin (method url-fetch) (uri (cran-uri "laeken" version)) (sha256 (base32 - "1p3ccbaydlr52p8qmgmm2l6kryvq6jjjx7mqn2vv0gpjaxqhyy92")))) + "02z8jyya6xv0pyfqaalbry174fw44h13s7p1jk5b4h9a9x4myjb0")))) (build-system r-build-system) (propagated-inputs (list r-boot r-mass)) @@ -9816,14 +10071,14 @@ plotting. a three dimensional point cloud.") (define-public r-ggridges (package (name "r-ggridges") - (version "0.5.5") + (version "0.5.6") (source (origin (method url-fetch) (uri (cran-uri "ggridges" version)) (sha256 (base32 - "18bmbq5pd751hnw8rpvshvapg09630i2pqpwk5a3yhgz4hwa8xvm")))) + "0dafd10ny6l2rlr1y453rhjiy17a33k15f82nk31238mk8qamk7g")))) (build-system r-build-system) (propagated-inputs (list r-ggplot2 r-scales r-withr)) @@ -10191,13 +10446,13 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.41") + (version "0.42") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 - (base32 "00ivgr557ja8l33lvawrivfhgj1xbjmdi4dj07zybwa1y6wc6x13")))) + (base32 "02kmlp5hzkcs35hwbvz06178i9rn96yfh93n6swzr89b47nzmfq7")))) (build-system r-build-system) (properties ;; knitr itself depends on xfun @@ -10402,6 +10657,26 @@ their own grammars and easily expose them in R packages.") @dfn{Universally Unique Identifiers} (UUIDs).") (license license:expat))) +(define-public r-tinylabels + (package + (name "r-tinylabels") + (version "0.2.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "tinylabels" version)) + (sha256 + (base32 "01pvnirma3wzfqnnz8zvyqajjyysjm3sd6813bgdhz199lcg7hhz")))) + (properties `((upstream-name . "tinylabels"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://github.com/mariusbarth/tinylabels") + (synopsis "Lightweight variable labels") + (description + "This package lets you assign, extract, or remove variable labels from R +vectors.") + (license license:expat))) + (define-public r-tinytex (package (name "r-tinytex") @@ -10490,13 +10765,13 @@ implementation of an approximate nearest neighbor search using hierarchical (define-public r-nestedcv (package (name "r-nestedcv") - (version "0.7.3") + (version "0.7.4") (source (origin (method url-fetch) (uri (cran-uri "nestedcv" version)) (sha256 - (base32 "1f725r2f00ldp6pdk3ncvwxm4c2asz6rjs6g8afwh6plxwfkcjq8")))) + (base32 "0ymy1dbkcpiyq44zpvpkz1m5ivnchip07q6agh6ij50imddxb48s")))) (properties `((upstream-name . "nestedcv"))) (build-system r-build-system) (propagated-inputs (list r-caret @@ -10510,6 +10785,7 @@ implementation of an approximate nearest neighbor search using hierarchical r-matrixtests r-proc r-rfast + r-rhpcblasctl r-rlang)) (native-inputs (list r-knitr)) (home-page "https://github.com/myles-lewis/nestedcv") @@ -10640,17 +10916,17 @@ software developed by the Statnet Project.") (define-public r-statcheck (package (name "r-statcheck") - (version "1.4.0") + (version "1.5.0") (source (origin (method url-fetch) (uri (cran-uri "statcheck" version)) (sha256 (base32 - "1hibrynbgsym4hma8isby8kwb8gab9d4bx7m43qj4zayrl6b8scx")))) + "0gsr068if5k8124x1cbm48720l9qvnfmdg6rmh7rwh6jvxxgknd7")))) (build-system r-build-system) (propagated-inputs - (list r-ggplot2 r-plyr r-rlang r-rmarkdown)) + (list r-ggplot2 r-plyr r-rlang r-rmarkdown r-stringi)) (home-page "https://cran.r-project.org/web/packages/statcheck/") (synopsis "Extract statistics from articles and recompute p-values") (description "This package can automatically extract statistical @@ -10944,14 +11220,14 @@ exhaustive search.") (define-public r-splus2r (package (name "r-splus2r") - (version "1.3-4") + (version "1.3-5") (source (origin (method url-fetch) (uri (cran-uri "splus2R" version)) (sha256 (base32 - "16r13bbijq7lz3c8qn7dnb4h8fc3vbcahyah2zij888p470vqljn")))) + "097bpzazw5ryb6izbmz2sdlghn3qvh7c7wsnn0j08j65f9bfmc77")))) (properties `((upstream-name . "splus2R"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/splus2R/") @@ -11011,7 +11287,8 @@ sapa R packages.") (uri (cran-uri "sapa" version)) (sha256 (base32 - "0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc")))) + "0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc")) + (patches (search-patches "r-sapa-lapack.patch")))) (build-system r-build-system) (propagated-inputs (list r-ifultools r-splus2r)) @@ -11045,14 +11322,14 @@ Fisher's method), and Sidak correction.") (define-public r-quantmod (package (name "r-quantmod") - (version "0.4.25") + (version "0.4.26") (source (origin (method url-fetch) (uri (cran-uri "quantmod" version)) (sha256 (base32 - "0cjvz6hd4q0fd87d54wxfaka3awi9jzj8a7x72jawkdxbza9c61z")))) + "165vp2ygry8ibcpxjbyfvfrjbv98syln12kkyzci2ygp84r5sv1r")))) (build-system r-build-system) (propagated-inputs (list r-curl r-jsonlite r-ttr r-xts r-zoo)) @@ -11631,17 +11908,52 @@ point} (IP), @dfn{majorize and minimize} (MM), @dfn{coordinate descent} (CD), and @dfn{alternating direction method of multipliers algorithms} (ADMM).") (license license:gpl2+))) +(define-public r-imifa + (package + (name "r-imifa") + (version "2.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "IMIFA" version)) + (sha256 + (base32 "08h53w1axvmvnd4z1nf5bsps5sr6g8a77q6pvg39ss7jcfqm800v")))) + (properties `((upstream-name . "IMIFA"))) + (build-system r-build-system) + (propagated-inputs + (list r-matrixstats + r-mvnfast + r-mclust + r-rfast + r-slam + r-viridislite)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=IMIFA") + (synopsis + "Infinite mixtures of infinite factor analysers and related models") + (description + "This package provides flexible Bayesian estimation of @acronym{IMIFA, +infinite mixtures of infinite factor analysers} and related models, for +nonparametrically clustering high-dimensional data. The IMIFA model conducts +Bayesian nonparametric model-based clustering with factor analytic covariance +structures without recourse to model selection criteria to choose the number of +clusters or cluster-specific latent factors, mostly via efficient Gibbs updates. +Model-specific diagnostic tools are also provided, as well as many options for +plotting results, conducting posterior inference on parameters of interest, +posterior predictive checking, and quantifying uncertainty.") + (license license:gpl3+))) + (define-public r-import (package (name "r-import") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "import" version)) (sha256 (base32 - "1h7km8751flxf70112r31wp10vhk4v1jr4avyb969ln317pf8yjq")))) + "0ngakg8jqn76c05hrglp4hmmwvm5a9ldc9s1i83a9rc8lni6nb1j")))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -12312,16 +12624,17 @@ evaluated by the @dfn{Akaike Information Criterion} (AIC).") (define-public r-catdata (package (name "r-catdata") - (version "1.2.3") + (version "1.2.4") (source (origin (method url-fetch) (uri (cran-uri "catdata" version)) (sha256 (base32 - "1d4zndlq2ngjhhqg9d6xi84ddfx262pl63gfw8qhq9m3w7z2dklx")))) + "1gvibnjfrjdsxx4jks29hhk3dfsm23nxnbwd5p8w67nxr4n6qn0w")))) (properties `((upstream-name . "catdata"))) (build-system r-build-system) (propagated-inputs (list r-mass)) + (native-inputs (list r-knitr)) (home-page "https://cran.r-project.org/package=catdata") (synopsis "Datasets and examples used in the book @emph{Regression for Categorical Data}") @@ -12426,14 +12739,14 @@ misclassification probabilities of different models.") (define-public r-zip (package (name "r-zip") - (version "2.3.0") + (version "2.3.1") (source (origin (method url-fetch) (uri (cran-uri "zip" version)) (sha256 (base32 - "0hs5yz324jpiy2h0jkrlcb2h9ks65mcc2vpf68briy9aj92aisrk")))) + "13y2mhy59jshw0vz7dbq0zg96j1151fqcdb5ycbmjlhwg0448xc3")))) (build-system r-build-system) (home-page "https://github.com/gaborcsardi/zip") (synopsis "Cross-platform Zip compression") @@ -13095,14 +13408,14 @@ those searches and pull data into their R sessions.") (define-public r-renv (package (name "r-renv") - (version "1.0.3") + (version "1.0.4") (source (origin (method url-fetch) (uri (cran-uri "renv" version)) (sha256 (base32 - "1d2y1yks34dg862zcxx03dak1h2gikis6mabmws2srja2hr18nlq")))) + "0jfrkxslx1bw4b2akkp12bgvpfc58dh2vrm91hgb1xa5xydai7j6")))) (properties `((upstream-name . "renv"))) (build-system r-build-system) (native-inputs @@ -13218,14 +13531,14 @@ always locate the files relative to your project root.") (define-public r-reticulate (package (name "r-reticulate") - (version "1.34.0") + (version "1.35.0") (source (origin (method url-fetch) (uri (cran-uri "reticulate" version)) (sha256 (base32 - "01j2dr93r5a18irwbm6hlh2v0s2rc5bl6dcmds1m64c1rli8j3cd")))) + "0693gzb7ihx4qzsr07k664k5r8vygcinwbdiiccmq9lshl1g64sy")))) (build-system r-build-system) (arguments (list @@ -13339,16 +13652,17 @@ without rendering it again in shiny apps.") (define-public r-ggseqlogo (package (name "r-ggseqlogo") - (version "0.1") + (version "0.2") (source (origin (method url-fetch) (uri (cran-uri "ggseqlogo" version)) (sha256 (base32 - "13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1")))) + "1drncw73950dzjx3lyyfqrxm3rdbrp44n27sl4b17m9d0crdbgqw")))) (build-system r-build-system) (propagated-inputs (list r-ggplot2)) + (native-inputs (list r-knitr)) (home-page "https://github.com/omarwagih/ggseqlogo") (synopsis "ggplot2 extension for drawing genetic sequence logos") (description @@ -13901,14 +14215,14 @@ references and Rd files.") (define-public r-officer (package (name "r-officer") - (version "0.6.3") + (version "0.6.5") (source (origin (method url-fetch) (uri (cran-uri "officer" version)) (sha256 (base32 - "0z3phawwxj4h1pwzw8lsl6pnypr77b329mg6r2qnzmj0j81585z5")))) + "1lzpabpdrwx3331b9qn43376r25bzgph1j9gbxzqjhzr1h871cpb")))) (build-system r-build-system) (propagated-inputs (list r-openssl r-r6 r-ragg r-uuid r-xml2 r-zip)) @@ -14027,14 +14341,14 @@ or missing responses.") (define-public r-acdm (package (name "r-acdm") - (version "1.0.4.2") + (version "1.0.4.3") (source (origin (method url-fetch) (uri (cran-uri "ACDm" version)) (sha256 (base32 - "00i33b76gqllyc6ywwwrgyjvxfspqb3jf52b9sjaazlfwgn5xyjf")))) + "0g89827az5mnllp6l71znbvwxzygb8nvnmsv6x052w2ajhd16v7v")))) (properties `((upstream-name . "ACDm"))) (build-system r-build-system) (propagated-inputs @@ -14051,15 +14365,17 @@ and tests them.") (define-public r-overlap (package (name "r-overlap") - (version "0.3.4.1") + (version "0.3.9") (source (origin (method url-fetch) (uri (cran-uri "overlap" version)) (sha256 (base32 - "0gr0qaay97js3qs11lpci2d3smwl0jda2gc8fqvbw6lb5fznf4r1")))) + "0x6mmd7gya17saph4dncl9dspfwc8achwcg5s5f92flwis76r7km")))) (build-system r-build-system) + (propagated-inputs + (list r-suntools)) (home-page "https://cran.r-project.org/web/packages/overlap/") (synopsis "Estimates of coefficient of overlapping for animal activity patterns") (description @@ -14138,14 +14454,14 @@ Decomposition in R (Beaton et al 2014) <doi:10.1016/j.csda.2013.11.006>.") (define-public r-insight (package (name "r-insight") - (version "0.19.7") + (version "0.19.8") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "01hzwz05zz8kxf8hgmz6i4npxwv12723bkv9jk3hhhghlc9lr9a1")))) + "1f76fqrcv54l01z2nb46ysh3f41j06nqpn4ffn2gmjfggmj4xvwq")))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -14224,17 +14540,24 @@ tidyverse workflow.") (define-public r-nodbi (package (name "r-nodbi") - (version "0.9.8") + (version "0.10.2") (source (origin (method url-fetch) (uri (cran-uri "nodbi" version)) (sha256 (base32 - "1ypwxy560pgn5zza1fv6ip0wh1y872lrf7a1blk2lvwf1q38dlkr")))) + "1pznlnln0p55qqwy22h9m79ddf3wgnx3vaxx2q39wvgqwj0kk1b0")))) (properties `((upstream-name . "nodbi"))) (build-system r-build-system) (propagated-inputs - (list r-dbi r-jqr r-jsonlite r-stringi r-uuid)) + (list r-dbi + r-jqr + r-jsonlite + r-r-utils + r-stringi + r-uuid + r-v8)) + (native-inputs (list r-knitr)) (home-page "https://docs.ropensci.org/nodbi/") (synopsis "NoSQL database connector") (description @@ -14332,14 +14655,14 @@ documents.") (define-public r-writexl (package (name "r-writexl") - (version "1.4.2") + (version "1.5.0") (source (origin (method url-fetch) (uri (cran-uri "writexl" version)) (sha256 (base32 - "09whcadnwqcshicbhv1vnvdai087yimmnz9lvc3rld5nn8z66xcg")))) + "1kkd17xw7giy1k2azw1xnagka7ihicp17bi7nzlm3gqay1cdqlz2")))) (build-system r-build-system) (inputs (list zlib)) (home-page "https://github.com/ropensci/writexl") @@ -14928,14 +15251,14 @@ from the @code{stats} package (plus some extra parameters).") (define-public r-cmplot (package (name "r-cmplot") - (version "4.5.0") + (version "4.5.1") (source (origin (method url-fetch) (uri (cran-uri "CMplot" version)) (sha256 (base32 - "1gg3pq55shh9khw5bsrdhk0yqgyr9xhdzqhaqksihka64wsqmhd3")))) + "0ml6n1wjxrnq13042jihpjlmm6vmkaiks9n49qp7v7rg47gn2ik8")))) (properties `((upstream-name . "CMplot"))) (build-system r-build-system) (home-page "https://github.com/YinLiLin/CMplot") @@ -15013,14 +15336,14 @@ through permutation testing.") (define-public r-intergraph (package (name "r-intergraph") - (version "2.0-3") + (version "2.0-4") (source (origin (method url-fetch) (uri (cran-uri "intergraph" version)) (sha256 (base32 - "1s578six6chn98ifgc8kdi2kxgim0mgw5di9sbk8c4aamjl40iim")))) + "1jarzhrgm5g8z2h10h8x7jk9q2al6rx5kgnwvwi2199am6gjypsq")))) (properties `((upstream-name . "intergraph"))) (build-system r-build-system) (propagated-inputs @@ -15039,13 +15362,13 @@ supported classes are those defined in packages @code{network} and (define-public r-interp (package (name "r-interp") - (version "1.1-5") + (version "1.1-6") (source (origin (method url-fetch) (uri (cran-uri "interp" version)) (sha256 (base32 - "082b1sx7m62csqig582syki8ny9vwxk311rh8hp1cmh1l5qhjlhc")))) + "0d6ddvm94113d9bjhghjsfbhgz44q0lkjc2l809dzv1lad708x1n")))) (properties `((upstream-name . "interp"))) (build-system r-build-system) (propagated-inputs (list r-deldir r-rcpp r-rcppeigen)) @@ -15183,14 +15506,14 @@ and coverage methods to tune the choice of threshold.") (define-public r-ggnetwork (package (name "r-ggnetwork") - (version "0.5.12") + (version "0.5.13") (source (origin (method url-fetch) (uri (cran-uri "ggnetwork" version)) (sha256 (base32 - "1kg9354f39asq5baryh3zzzdl54g75mn1pxdr3pws9d2q5i8cdkl")))) + "0ipxw6j36n0hfn0nsimw8jbjszvm1d0hadwg4zirvn6v36npwabc")))) (properties `((upstream-name . "ggnetwork"))) (build-system r-build-system) (propagated-inputs @@ -15258,14 +15581,14 @@ Models\" (Hastie and Tibshirani, 1990).") (define-public r-superlearner (package (name "r-superlearner") - (version "2.0-28.1") + (version "2.0-29") (source (origin (method url-fetch) (uri (cran-uri "SuperLearner" version)) (sha256 (base32 - "19kb4shfhj5aigjm1ljmlvr0jmgcbd6yl4gl3wfddy0nk2wi2bvm")))) + "0g1baz8jakgfwdh5bd9hrg1nm4ljpnxiiy5pmf00d27ld7wh6sr3")))) (properties `((upstream-name . "SuperLearner"))) (build-system r-build-system) (propagated-inputs @@ -15523,13 +15846,13 @@ Processing of very large files is supported.") (define-public r-mosaic (package (name "r-mosaic") - (version "1.9.0") + (version "1.9.1") (source (origin (method url-fetch) (uri (cran-uri "mosaic" version)) (sha256 - (base32 "1dydqawljv5l9lmhdrhmr7wh3q1c2mnc61gc99jr0jbb1bmls327")))) + (base32 "0l7h3zg5izr5xxqy1sngz6fzbwdffzljnjmfbshzzbl4x80f5lwl")))) (build-system r-build-system) (propagated-inputs (list r-dplyr @@ -15879,13 +16202,13 @@ for the reconstruction of gene regulatory networks.") (define-public r-pscl (package (name "r-pscl") - (version "1.5.5.1") + (version "1.5.9") (source (origin (method url-fetch) (uri (cran-uri "pscl" version)) (sha256 - (base32 "0nwdwyxmy4baiwjjvrypdclzhpbsipik1rkrvgag4y2csg1nf4v1")))) + (base32 "1zkfzrc1cr3f5dlz0mv45ym0as1yp9gicds6lhxpj13qk38zz1c0")))) (build-system r-build-system) (propagated-inputs (list r-mass)) @@ -16138,14 +16461,14 @@ samples is large and the number of mixture components is not too large.") (define-public r-magick (package (name "r-magick") - (version "2.8.2") + (version "2.8.3") (source (origin (method url-fetch) (uri (cran-uri "magick" version)) (sha256 (base32 - "15ja7f46f77a67wmzqfaxvhmvvzgb9yj92p2if5di7i61vlmnid1")))) + "0yf08ns5qgqi2bzvxvawip521ji2rgvvfrhj747zb6ci5qnm4awk")))) (properties '((updater-extra-inputs . ("imagemagick")))) (build-system r-build-system) @@ -16252,13 +16575,13 @@ handle data from simple random samples as well as complex surveys.") (define-public r-tarchetypes (package (name "r-tarchetypes") - (version "0.7.11") + (version "0.7.12") (source (origin (method url-fetch) (uri (cran-uri "tarchetypes" version)) (sha256 (base32 - "1iqrz27n8ndazx97ngqbz5yz5ppyimpbxam30zgdwnnzf963s5ym")))) + "0l5kk7a3p0pbqh9rrjz43aa4dgcfffcb3wwsl60bm9v48lzv7frv")))) (properties `((upstream-name . "tarchetypes"))) (build-system r-build-system) (propagated-inputs (list r-digest @@ -16286,13 +16609,13 @@ were influenced by the drake R package by Will Landau (2018) (define-public r-targets (package (name "r-targets") - (version "1.4.1") + (version "1.5.1") (source (origin (method url-fetch) (uri (cran-uri "targets" version)) (sha256 (base32 - "0kax8nj66jbcp8sbv7zl68hzf4clz5m50fibrcypnzvpamhafw1q")))) + "1g21cp0p5jdghr61w9q3y73jm2k248z4apn7rlxqm6m18i4x7zsb")))) (properties `((upstream-name . "targets"))) (build-system r-build-system) (propagated-inputs (list r-base64url @@ -16303,8 +16626,10 @@ were influenced by the drake R package by Will Landau (2018) r-digest r-igraph r-knitr + r-ps r-r6 r-rlang + r-secretbase r-tibble r-tidyselect r-vctrs @@ -16462,13 +16787,13 @@ estimation problem.") (define-public r-quickjsr (package (name "r-quickjsr") - (version "1.0.9") + (version "1.1.3") (source (origin (method url-fetch) (uri (cran-uri "QuickJSR" version)) (sha256 (base32 - "12a0m57kwn2k9j5k6vl8hb10081rydpz9rczc9hccdj9ky9wiv0k")))) + "0ccp7dx2jhlarfn48jc0mhci5kkj0r3ibh6rjnxswvp3yg2x2bgd")))) (properties `((upstream-name . "QuickJSR"))) (build-system r-build-system) (propagated-inputs (list r-jsonlite r-r6 r-rcpp)) @@ -16729,14 +17054,14 @@ the differences were not significantly different.") (define-public r-emmeans (package (name "r-emmeans") - (version "1.9.0") + (version "1.10.0") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "18gib8ly7kfzdbi3srczrdqvjghf7swp127ksfs1fvs9dzgkkg96")))) + "1vq7abyirrrpx00d464pgva2i17f3wxx08f4rc23bl331s3lsx23")))) (build-system r-build-system) (propagated-inputs (list r-estimability r-mvtnorm r-numderiv)) @@ -16830,14 +17155,14 @@ correlation, censored, ordered and multivariate problems.") (define-public r-bayesplot (package (name "r-bayesplot") - (version "1.10.0") + (version "1.11.1") (source (origin (method url-fetch) (uri (cran-uri "bayesplot" version)) (sha256 (base32 - "1zqka7lg7a6ccli1yzhk1n13vbrlp8m0kjxmykjqmkz438mvjk5v")))) + "0c1q1znp9vd0w6l35xa208bgiwr5f2w8j2c97v6ml4z0j5rycwag")))) (build-system r-build-system) (inputs (list pandoc)) @@ -16971,14 +17296,14 @@ differentiation.") (define-public r-bayestestr (package (name "r-bayestestr") - (version "0.13.1") + (version "0.13.2") (source (origin (method url-fetch) (uri (cran-uri "bayestestR" version)) (sha256 (base32 - "0mmnifi3j29qlsj917wbdqpgpk05x3cc7111k842gsv7y34h4ir7")))) + "15xnmjay0s9kgaj25z43cxky4qcjn3gv8yd1x548jzbxzxxma07n")))) (properties `((upstream-name . "bayestestR"))) (build-system r-build-system) (propagated-inputs @@ -16998,14 +17323,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.10.8") + (version "0.10.9") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "0zvj0bzbqcy35jcg1s6b1wqbz7rbajzvjm74aks4j6iq4grh4d2j")))) + "1qi08vwh08ndmjyx5vcpwf20j1dkj8998vz7zy26fhp1kf9dlkfw")))) (build-system r-build-system) (propagated-inputs (list r-bayestestr r-datawizard r-insight)) @@ -17024,14 +17349,14 @@ effects models and Bayesian models.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "1.3.4") + (version "1.5.0") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "0hxcal1rldi3295hy5n1nzad092gis1cxnjsbbhfrbj3z35aacbs")))) + "0yczz34rn4sikwzqpm3w47zwm201mv4mljrcgpb50is06g3l7azk")))) (build-system r-build-system) (propagated-inputs (list r-insight)) @@ -17360,14 +17685,14 @@ User credentials are shared with command line git through the (define-public r-usethis (package (name "r-usethis") - (version "2.2.2") + (version "2.2.3") (source (origin (method url-fetch) (uri (cran-uri "usethis" version)) (sha256 (base32 - "0imy9izchr9xzc5wrr91ydfr4jifv8lsqx712zkx0vxfi6kw3n6r")))) + "1cyy1k5iansg63ziph4w76kzl59dgmam7m2wp6sz9d93bjcrh34d")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -17765,17 +18090,41 @@ the interfaces between R and C++.") analysing multivariate abundance data in community ecology.") (license license:lgpl2.1+))) +(define-public r-mvnfast + (package + (name "r-mvnfast") + (version "0.2.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "mvnfast" version)) + (sha256 + (base32 "1869xqq2wd7yw23q4ma5qawcnbdp7myafk6rdxazqymqak7f0wc8")))) + (properties `((upstream-name . "mvnfast"))) + (build-system r-build-system) + (propagated-inputs (list r-bh r-rcpp r-rcpparmadillo)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/mfasiolo/mvnfast/") + (synopsis "Fast multivariate normal and Student's t methods") + (description + "This package provides computationally efficient tools related to the +multivariate normal and Student's t distributions. The main functionalities +are: simulating multivariate random vectors, evaluating multivariate normal or +Student's t densities and Mahalanobis distances. These tools are developed +using C++ code and of the OpenMP API.") + (license license:gpl2+))) + (define-public r-afex (package (name "r-afex") - (version "1.3-0") + (version "1.3-1") (source (origin (method url-fetch) (uri (cran-uri "afex" version)) (sha256 (base32 - "0cqr3vv4aapg8ckhrkwqhs5qvzl8zla147fvhd5wb2020yhpdqpq")))) + "1a1ilqn5xz7kkiwwaqi911b1cf9zc78l9my0fvjq3l73hrzgnr2a")))) (build-system r-build-system) ;; This is needed for the vignette builder (arguments @@ -17995,14 +18344,14 @@ mathematics.") (define-public r-rcppannoy (package (name "r-rcppannoy") - (version "0.0.21") + (version "0.0.22") (source (origin (method url-fetch) (uri (cran-uri "RcppAnnoy" version)) (sha256 (base32 - "1xzhax5hmn79h6kmz7inrlaya5mdpzqj6j7n5ridyzc4vcrs412q")))) + "0rcgvmlp3by57k562pbxsncirww1vv8zarfxrjzfgly4hzbj28cz")))) (properties `((upstream-name . "RcppAnnoy"))) (build-system r-build-system) (propagated-inputs @@ -18020,14 +18369,14 @@ This package provides an R interface.") (define-public r-rcpphnsw (package (name "r-rcpphnsw") - (version "0.5.0") + (version "0.6.0") (source (origin (method url-fetch) (uri (cran-uri "RcppHNSW" version)) (sha256 (base32 - "0sb9g41lk2f7fj0hpg9qvyp6gbvwlcjpi9gxs3lh3xxfzrnap5w9")))) + "03sqzz1993jsjm5vpyd1n1fpsrdfrky6dpv7m9ialhs1m00fv9m5")))) (properties `((upstream-name . "RcppHNSW"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -18209,14 +18558,14 @@ image formats, including PNG, Postscript, SVG, PGF.") (define-public r-multicool (package (name "r-multicool") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "multicool" version)) (sha256 (base32 - "0gcic5w3z5yibq75j7jzjv3lmy04rfmxswmw60vxba4xsnbqxc2g")))) + "07vcyp7yd1rzlldxzpzrdgifnw88z0maq2dgsqc218vyplgxwwmx")))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) (home-page "https://cran.r-project.org/web/packages/multicool/") @@ -18488,14 +18837,14 @@ al. (2010) <DOI:10.1016/j.neuroimage.2010.04.241>, Tabelow and Polzehl (2011) (define-public r-fmsb (package (name "r-fmsb") - (version "0.7.5") + (version "0.7.6") (source (origin (method url-fetch) (uri (cran-uri "fmsb" version)) (sha256 (base32 - "082qj08kzyzwvjacwq0sl3xxdx6iz5hgx6q24jv1mnvx7z5xn5ry")))) + "1cnkg4njb432p05j8hdwfa2swiynwm864yixgfbyr26r8jfz4zg5")))) (build-system r-build-system) (home-page "https://minato.sip21c.org/msb/") (synopsis "Functions for medical statistics book with demographic data") @@ -19116,23 +19465,23 @@ linear models to large data sets by updating algorithms.") (define-public r-densityclust (package (name "r-densityclust") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) (uri (cran-uri "densityClust" version)) (sha256 (base32 - "05x2fi1zdnkrg2nimf8k904j3lpyw0f7nmk6ax5p7x7a98wb2iqs")))) + "0iiq2zal792741z1a23h7cy9jp4hsc7513dxain132526f1yrzsl")))) (properties `((upstream-name . "densityClust"))) (build-system r-build-system) (propagated-inputs - (list r-fnn + (list r-cpp11 + r-fnn r-ggplot2 r-ggrepel r-gridextra r-rcolorbrewer - r-rcpp r-rtsne)) (home-page "https://cran.r-project.org/web/packages/densityClust") (synopsis "Clustering by fast search and find of density peaks") @@ -19431,16 +19780,15 @@ Touzet and Varre (2007).") (define-public r-rnaturalearthdata (package (name "r-rnaturalearthdata") - (version "0.1.0") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "rnaturalearthdata" version)) (sha256 (base32 - "1z32j5lz2lb8xgpkr73majw22k0b49iazj6jjc7j4w9k4zxxa102")))) + "0k8yzgpbf8d2jxxy9vzqfa3z3w4h3i9kp4rc811f4pspxbqzmzp1")))) (properties `((upstream-name . "rnaturalearthdata"))) (build-system r-build-system) - (propagated-inputs (list r-sp)) (home-page "https://github.com/ropenscilabs/rnaturalearthdata") (synopsis "World vector map data from Natural Earth") (description @@ -19475,13 +19823,13 @@ library which allows parsing of NEXUS, Newick and other phylogenetic tree (define-public r-phylobase (package (name "r-phylobase") - (version "0.8.10") + (version "0.8.12") (source (origin (method url-fetch) (uri (cran-uri "phylobase" version)) (sha256 (base32 - "0jzr1gdvmi4l640hwwzh9bxqmpja69bn3ygnaqx37awvyh7khi2s")))) + "084gfzq51acmvzbsfpkqv3kgghdbncnwr008f95yf5b2vihcm0cv")))) (build-system r-build-system) (propagated-inputs (list r-ade4 r-ape r-rcpp r-rncl r-rnexml)) @@ -19551,14 +19899,14 @@ and compatibility with @code{ape} objects.") (define-public r-rnifti (package (name "r-rnifti") - (version "1.5.1") + (version "1.6.0") (source (origin (method url-fetch) (uri (cran-uri "RNifti" version)) (sha256 (base32 - "0rbym1svldahd4rlbcfb5s62rigws2w1fa1f1chp504gn340b555")))) + "0spsdkqvlkk7xn6wz6778gc6cc7dnfcwpz91q8wdzxgcbgxdy0yv")))) (properties `((upstream-name . "RNifti"))) (build-system r-build-system) (inputs (list zlib)) @@ -20049,35 +20397,32 @@ preparing, executing, and processing HTTP requests.") (define-public r-bigrquery (package (name "r-bigrquery") - (version "1.4.2") + (version "1.5.0") (source (origin (method url-fetch) (uri (cran-uri "bigrquery" version)) (sha256 (base32 - "1rw0w4bmqs1v8xjg787n6dsk5dmizgvjg9wrky38s7a7zsvlryri")))) + "1s2vvygv4d8mdd67r6j2s9d1xg009lpxysfarmrnqh0s2s1rglkz")))) (build-system r-build-system) (propagated-inputs - (list r-assertthat - r-bit64 + (list r-bit64 r-brio r-cli + r-clock + r-cpp11 r-curl r-dbi r-gargle - r-glue r-httr r-jsonlite r-lifecycle r-prettyunits - r-progress r-rapidjsonr - r-rcpp r-rlang - r-tibble - r-withr)) - (home-page "https://github.com/rstats-db/bigrquery") + r-tibble)) + (home-page "https://github.com/r-dbi/bigrquery") (synopsis "R interface to Google's BigQuery API") (description "This package provides an R interface to Google's BigQuery database.") @@ -20110,14 +20455,14 @@ limitations\" using the GNU Multiple Precision library.") (define-public r-rmpfr (package (name "r-rmpfr") - (version "0.9-4") + (version "0.9-5") (source (origin (method url-fetch) (uri (cran-uri "Rmpfr" version)) (sha256 (base32 - "1fx8l42bbipzlaaljp7iwdkgbmb0rcw07vh4py8fycb3dvs9iiyf")))) + "06zkllbdaddq3jq03k926gfjcijvcysfrqhh76hjklzwkrra5sdw")))) (properties `((upstream-name . "Rmpfr"))) (build-system r-build-system) (inputs @@ -21007,13 +21352,13 @@ profiling R code.") (define-public r-prospectr (package (name "r-prospectr") - (version "0.2.6") + (version "0.2.7") (source (origin (method url-fetch) (uri (cran-uri "prospectr" version)) (sha256 (base32 - "1p53hcgcs2p09zhc2n7byjzrgvcgz6w7q00mlsn4kmnz7l4p7rrm")))) + "0hg2afw5aixx0xdwwr6g0wi8sksn7r21hz8diyqxg2345rwnzbg4")))) (properties `((upstream-name . "prospectr"))) (build-system r-build-system) (propagated-inputs @@ -21023,6 +21368,8 @@ profiling R code.") r-mathjaxr r-rcpp r-rcpparmadillo)) + (native-inputs + (list r-knitr)) (home-page "https://github.com/l-ramirez-lopez/prospectr") (synopsis "Functions for processing and sample selection of spectroscopic data") (description @@ -21235,14 +21582,14 @@ by change of variable.") (define-public r-listenv (package (name "r-listenv") - (version "0.9.0") + (version "0.9.1") (source (origin (method url-fetch) (uri (cran-uri "listenv" version)) (sha256 (base32 - "11s8cy259al6x98xcz93jw6p87si01gcgzccnxhx69879zh42a1m")))) + "0fqwikd3z6n5mia55s3fn5wxnmf2vbw3cmf0hcmm3iligd4ayaj2")))) (build-system r-build-system) (arguments `(#:phases @@ -21287,14 +21634,14 @@ them in distributed compute environments.") (define-public r-parallelly (package (name "r-parallelly") - (version "1.36.0") + (version "1.37.0") (source (origin (method url-fetch) (uri (cran-uri "parallelly" version)) (sha256 (base32 - "123w89hmd7fn7lmdsl044npidvf7472h1ascvf7swjllan8s5h5r")))) + "19zrfiakg5xg51r9va4r976b4lnnsj5nsk6i6srxsl227q45xra1")))) (properties `((upstream-name . "parallelly"))) (build-system r-build-system) (home-page "https://github.com/HenrikBengtsson/parallelly") @@ -21805,14 +22152,14 @@ users of rARPACK are advised to switch to the RSpectra package.") (define-public r-compositions (package (name "r-compositions") - (version "2.0-7") + (version "2.0-8") (source (origin (method url-fetch) (uri (cran-uri "compositions" version)) (sha256 (base32 - "1j1qa0lkb7ywh0q79dklhw4gvkxgvk3qhw3rx9srrlrc7jv22hml")))) + "147j3sbqcy3hfja1zs8s8p9zzp9a68vk52s545c2p6anyj4381n5")))) (build-system r-build-system) (propagated-inputs (list r-bayesm r-mass r-robustbase r-tensora)) @@ -21829,14 +22176,14 @@ numbers (e.g. concentrations).") (define-public r-cobs (package (name "r-cobs") - (version "1.3-5") + (version "1.3-7") (source (origin (method url-fetch) (uri (cran-uri "cobs" version)) (sha256 (base32 - "04f6a6gp11p93j2k35mbrfqgjx5qsgi3dj1085a5v5s0z6l7vbkz")))) + "0gz6i8scvfkmg0z7rcqc422dm360xv5ygcxnj6yyvpcpdv7sdp9k")))) (build-system r-build-system) (propagated-inputs (list r-quantreg r-sparsem)) @@ -22464,13 +22811,13 @@ plotting functions are available for analyzing clustering results.") (define-public r-remacor (package (name "r-remacor") - (version "0.0.16") + (version "0.0.18") (source (origin (method url-fetch) (uri (cran-uri "remaCor" version)) (sha256 (base32 - "1xznj2y3qszw8s1fgbs8fiadg7c0gl3ml1blxmwixb32kr2cv5vq")))) + "0c8n2zj84m2z0vznx81qrspnyyj38imb73di4l2k0brr8jxgzr2p")))) (properties `((upstream-name . "remaCor"))) (build-system r-build-system) (propagated-inputs @@ -22566,14 +22913,14 @@ can be used with function approximation, eligibility traces (Singh & Sutton, (define-public r-lemon (package (name "r-lemon") - (version "0.4.7") + (version "0.4.9") (source (origin (method url-fetch) (uri (cran-uri "lemon" version)) (sha256 (base32 - "1r33n7bkfhjpyi23j7gsi387qvyazcy9b912dsd3vg2yqir8s26p")))) + "1yjam478s6sz1spggybb34akpmpgq8ybyrhzy3b1v9s1j81b6k87")))) (build-system r-build-system) (propagated-inputs (list r-ggplot2 @@ -22649,13 +22996,13 @@ additional utilities for genomic regions processing.") (define-public r-setrng (package (name "r-setrng") - (version "2022.4-1") + (version "2024.2-1") (source (origin (method url-fetch) (uri (cran-uri "setRNG" version)) (sha256 (base32 - "09089vr5x8snwxh38kdhgpjl3jl7zrk056f6f9a2jg5lsrmnxh31")))) + "0h2wbpsi07c48h72zjglvp9b58hq3j77289sah32qg6vnw41pcp3")))) (properties `((upstream-name . "setRNG"))) (build-system r-build-system) (home-page "https://distr.r-forge.r-project.org/") @@ -22868,6 +23215,29 @@ visualization of biological sequence (DNA and protein) data. It also includes utilities for sequence data management under the ACNUC system.") (license license:gpl2+))) +(define-public r-unigd + (package + (name "r-unigd") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "unigd" version)) + (sha256 + (base32 "0519v2p4jzfpilai022blvyxi56kfdidafwjpa1g6lnmwmpk4isq")))) + (properties `((upstream-name . "unigd"))) + (build-system r-build-system) + (inputs (list cairo fontconfig freetype libpng zlib)) + (propagated-inputs (list r-cpp11 r-systemfonts)) + (native-inputs (list r-knitr pkg-config)) + (home-page "https://github.com/nx10/unigd") + (synopsis "Universal graphics device") + (description + "This package provides a unified R graphics backend. Render R graphics +fast and easy to many common file formats. It provides a thread safe C +interface for asynchronous rendering of R graphics.") + (license license:gpl2+))) + (define-public r-units (package (name "r-units") @@ -23150,13 +23520,13 @@ or raster data cubes) are handled by package stars'.") (define-public r-spdep (package (name "r-spdep") - (version "1.3-1") + (version "1.3-3") (source (origin (method url-fetch) (uri (cran-uri "spdep" version)) (sha256 (base32 - "15jkx3f4c1255kidsqdq4gyi28r4jk3h46fm7jj114ag176jq1in")) + "06j26v0w33vyh5ilq1cn0rh8z0lrr3n0lxwxc7bsk2w524d3v6yw")) (snippet '(for-each delete-file '("inst/doc/CO69.html" "inst/doc/CO69.R" @@ -23411,14 +23781,14 @@ include (define-public r-haplo-stats (package (name "r-haplo-stats") - (version "1.9.5") + (version "1.9.5.1") (source (origin (method url-fetch) (uri (cran-uri "haplo.stats" version)) (sha256 (base32 - "17h7nxpc5ggxwpc4j4cxf7n0qglc93vhwd4ljwa8ic33x3yab673")))) + "1fcnyglmz9ia6zpk0vvmjqiwxlpal58rksgb1yvrajqgylw3kbsy")))) (properties `((upstream-name . "haplo.stats"))) (build-system r-build-system) (propagated-inputs @@ -23439,14 +23809,14 @@ examples in the vignette.") (define-public r-bqtl (package (name "r-bqtl") - (version "1.0-35") + (version "1.0-36") (source (origin (method url-fetch) (uri (cran-uri "bqtl" version)) (sha256 (base32 - "107yq7mk4gdr1wm20i751682jlj172bzbdjgqwviwgjxzbd0c2xa")))) + "18fwg52j6dv1v1pcc4997j2f5vlfmcvqqdg0618fq9zaq8j4cz6h")))) (build-system r-build-system) (native-inputs (list gfortran)) (home-page "http://famprevmed.ucsd.edu/faculty/cberry/bqtl/") @@ -23663,6 +24033,27 @@ releases/download/v0.10.1/mathquill-0.10.1.tgz") authoring books and technical documents with R Markdown.") (license license:gpl3))) +(define-public r-options + (package + (name "r-options") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "options" version)) + (sha256 + (base32 "0pprbp2pxvgh120f8dahswws44gpdm4f4nlq3h3nvqrlhnspwnb8")))) + (properties `((upstream-name . "options"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://dgkf.github.io/options/") + (synopsis "Simple, consistent package options") + (description + "This package provides simple mechanisms for defining and interpreting +package options. It provides helpers for interpreting environment variables, +global options, defining default values and more.") + (license license:expat))) + (define-public r-optparse (package (name "r-optparse") @@ -23827,32 +24218,20 @@ the corresponding outputs (tables and graphs).") (define-public r-rjava (package (name "r-rjava") - (version "1.0-10") + (version "1.0-11") (source (origin (method url-fetch) (uri (cran-uri "rJava" version)) (sha256 (base32 - "0srrjfqrcp7b6k62qv3d18r97k6kbcz0g4pn2y0rv0f5wlc6i0mm")) - (snippet - '(for-each delete-file - (list "inst/javadoc/jquery/jquery-ui.min.js" - "inst/javadoc/jquery/jszip/dist/jszip.min.js" - "inst/javadoc/jquery/jszip-utils/dist/jszip-utils-ie.min.js" - "inst/javadoc/jquery/jszip-utils/dist/jszip-utils.min.js"))))) + "05v4k0vzv1yx80b5dgmp6l7q3w64cr3k5a29hvggg1ixapswr84y")))) (properties `((upstream-name . "rJava"))) (build-system r-build-system) (arguments (list - #:modules '((guix build r-build-system) - (guix build minify-build-system) - (guix build utils) - (ice-9 match)) - #:imported-modules `(,@%r-build-system-modules - (guix build minify-build-system)) #:phases - #~(modify-phases (@ (guix build r-build-system) %standard-phases) + #~(modify-phases %standard-phases (add-after 'unpack 'set-JAVA_HOME (lambda* (#:key inputs #:allow-other-keys) (let ((jdk (assoc-ref inputs "jdk"))) @@ -23864,27 +24243,11 @@ the corresponding outputs (tables and graphs).") (setenv "JAVA_CPPFLAGS" (string-append "-I" jdk "/include " "-I" jdk "/include/linux")) - (setenv "JAVA_LIBS" (search-input-file inputs "/lib/libjvm.so"))))) - (add-after 'unpack 'replace-bundled-minified-JavaScript - (lambda _ - (with-directory-excursion "inst/javadoc" - (for-each (match-lambda - ((source . target) - (minify source #:target target))) - `(("jquery/jquery-ui.js" - . "jquery/jquery-ui.min.js") - ("jquery/jszip/dist/jszip.js" - . "jquery/jszip/dist/jszip.min.js") - ("jquery/jszip-utils/dist/jszip-utils-ie.js" - . "jquery/jszip-utils/dist/jszip-utils-ie.min.js") - ("jquery/jszip-utils/dist/jszip-utils.js" - . "jquery/jszip-utils/dist/jszip-utils.min.js"))))))))) + (setenv "JAVA_LIBS" (search-input-file inputs "/lib/libjvm.so")))))))) (inputs `(("icu4c" ,icu4c) ("jdk" ,openjdk11 "jdk") ("zlib" ,zlib))) - (native-inputs - (list esbuild)) (home-page "https://www.rforge.net/rJava/") (synopsis "Low-Level R to Java interface") (description @@ -24152,14 +24515,14 @@ package.") (define-public r-yulab-utils (package (name "r-yulab-utils") - (version "0.1.3") + (version "0.1.4") (source (origin (method url-fetch) (uri (cran-uri "yulab.utils" version)) (sha256 (base32 - "0yh29d28i67z3wyif72lr35ki92rqv6rljdjwj28559f7n864yjv")))) + "0m1iip6w711z92y6qw0rc0flxl9bzj85vrhm2q2rqjz9pyqf3m1j")))) (properties `((upstream-name . "yulab.utils"))) (build-system r-build-system) (propagated-inputs @@ -24328,14 +24691,14 @@ sets of URLs.") (define-public r-ggforce (package (name "r-ggforce") - (version "0.4.1") + (version "0.4.2") (source (origin (method url-fetch) (uri (cran-uri "ggforce" version)) (sha256 (base32 - "0wqq8l7lq96k4w0vq12jcg7clvgia8s35jjbqq1s0py4cgxijhml")))) + "1a2i1rl27yqh8kxjpphwcv05p19l2aw07q9gxl4x8iv8xpkb0if1")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -24365,13 +24728,13 @@ that fills this gap.") (define-public r-eulerr (package (name "r-eulerr") - (version "7.0.0") + (version "7.0.1") (source (origin (method url-fetch) (uri (cran-uri "eulerr" version)) (sha256 (base32 - "16a84a2xgv1iqsir0hzn6qclljni4f3prpycb7qpp06vrd0yn8lw")))) + "1c8yf94ga4h6rf89fyajxfsaq5z6dx1z2840371vxj7kwj9slg3c")))) (properties `((upstream-name . "eulerr"))) (build-system r-build-system) (propagated-inputs @@ -24568,14 +24931,14 @@ discriminant analysis for the purpose of classifying high dimensional data.") (define-public r-ggvis (package (name "r-ggvis") - (version "0.4.8") + (version "0.4.9") (source (origin (method url-fetch) (uri (cran-uri "ggvis" version)) (sha256 (base32 - "0sm28s2zlr3rbp7qzpgin7d9axixn4kgi1apb5mw4mvsp6h80m1x")) + "0bx1bg19l8nfwzwhnn2jn0b0lwcb781l6v9k5zfsx44wg22d3fb9")) (snippet '(for-each delete-file '("inst/www/lib/d3/d3.min.js" @@ -24828,14 +25191,14 @@ function for computing a matrix of correlation p-values.") (define-public r-ggfun (package (name "r-ggfun") - (version "0.1.3") + (version "0.1.4") (source (origin (method url-fetch) (uri (cran-uri "ggfun" version)) (sha256 (base32 - "1jk94qridy587dnw3j97k73wa02vs3vcfrjgrri35kvv7fkjw8w9")))) + "1i1kcpcy3ik5p9c8742cq3syg8civ7iq6ff1fr0240gl3ca1lx6w")))) (properties `((upstream-name . "ggfun"))) (build-system r-build-system) (propagated-inputs @@ -25191,14 +25554,14 @@ matched.") (define-public r-ggnewscale (package (name "r-ggnewscale") - (version "0.4.9") + (version "0.4.10") (source (origin (method url-fetch) (uri (cran-uri "ggnewscale" version)) (sha256 (base32 - "1vy0i2gk57k06gzywy8hdhl2k9511c5mhy9dzvkzlagqihp5b8bh")))) + "1j8d512qhdlhfp3hb36d1dqlqlxs0i303mnn31xnq1adcwwibmlz")))) (properties `((upstream-name . "ggnewscale"))) (build-system r-build-system) (propagated-inputs @@ -25237,14 +25600,14 @@ colored by the number of neighboring points. This is useful to visualize the (define-public r-arrow (package (name "r-arrow") - (version "14.0.0.2") + (version "14.0.2.1") (source (origin (method url-fetch) (uri (cran-uri "arrow" version)) (sha256 (base32 - "1dwap9lap0hac0bhi8ajz06n9ccjdyfr5s153k1lxfgicqnsaf3i")))) + "1l1ninmq6mbqm7cckcy0qw4f20fkrixrykcqkh24bszg514r9af5")))) (properties `((upstream-name . "arrow"))) (build-system r-build-system) (inputs @@ -25421,14 +25784,14 @@ multicore machines.") (define-public r-mcmcpack (package (name "r-mcmcpack") - (version "1.6-3") + (version "1.7-0") (source (origin (method url-fetch) (uri (cran-uri "MCMCpack" version)) (sha256 (base32 - "1cwdjn43b9hxpxf9mnas583myhk6r2258mh57f0zsc8bd4hbl56b")))) + "1vsx0hs8v0928lhkf2jhwc2cwq7bdb5iciibkbfc2zh123bp6q44")))) (properties `((upstream-name . "MCMCpack"))) (build-system r-build-system) (propagated-inputs @@ -25525,13 +25888,13 @@ code edited with @code{RStudio IDE}, @code{Emacs} and @code{Vim}.") (define-public r-sccore (package (name "r-sccore") - (version "1.0.4") + (version "1.0.5") (source (origin (method url-fetch) (uri (cran-uri "sccore" version)) (sha256 - (base32 "11l7xl1ylzmda4i2p1b08a43pvciin2i2sas2n3cj1gmamflkji3")))) + (base32 "12jljngm0v75zp0zka1zdrn6pvxvqy7qpakr7vzazvq1vvjd5qlg")))) (properties `((upstream-name . "sccore"))) (build-system r-build-system) (propagated-inputs @@ -26003,14 +26366,14 @@ annotated biological functions.") (define-public r-plot3d (package (name "r-plot3d") - (version "1.4") + (version "1.4.1") (source (origin (method url-fetch) (uri (cran-uri "plot3D" version)) (sha256 (base32 - "1h59zlsyzbjylaziwavppl9bjmnba4iiq34772y3dys6fqclajnh")))) + "1x6ian6hfkaih2aa11z92qlihqqf5wmpc9705dzigafx8i4gfvfv")))) (properties `((upstream-name . "plot3D"))) (build-system r-build-system) (propagated-inputs (list r-misc3d)) @@ -26174,14 +26537,14 @@ the current document.") (define-public r-xgboost (package (name "r-xgboost") - (version "1.7.6.1") + (version "1.7.7.1") (source (origin (method url-fetch) (uri (cran-uri "xgboost" version)) (sha256 (base32 - "0q1x7ldvjankaf0gqcqiyiy514c5jascggfq6qrfyn3sravdcggj")))) + "08wpxr8jkzsqb5zaw43bmq5r7k3jnb1ibjkliwh2ffjq7b7jr4gp")))) (build-system r-build-system) (propagated-inputs (list r-data-table r-jsonlite r-matrix)) @@ -26257,30 +26620,27 @@ LargeVis method of Tang et al. (2016) is also provided.") (define-public r-kableextra (package (name "r-kableextra") - (version "1.3.4") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "kableExtra" version)) (sha256 (base32 - "1c5vzy95cbz36jwyssr927qicrayifinv861rvnmg4nghb1gl7q9")))) + "02blaamz6xkdwgyvw6akjhn5fvwy8l24k7nwqj2id6g8qagwrqlg")))) (properties `((upstream-name . "kableExtra"))) (build-system r-build-system) (propagated-inputs (list r-digest - r-glue r-htmltools r-knitr r-magrittr r-rmarkdown r-rstudioapi - r-rvest r-scales r-stringr r-svglite r-viridislite - r-webshot r-xml2)) (native-inputs (list r-knitr)) @@ -26742,44 +27102,32 @@ dataset-specific factors.") (define-public r-harmony (package (name "r-harmony") - (version "0.1") + (version "1.2.0") (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/immunogenomics/harmony") - (commit version))) - (file-name (git-file-name name version)) + (method url-fetch) + (uri (cran-uri "harmony" version)) (sha256 - (base32 - "05r401q09rbr6fqhb9mbd95082cjdi3nag1cv6zn96xkr0f6imq9")) - (modules '((guix build utils))) - (snippet - '(begin - (for-each delete-file '("config.status" "configure")) - #t)))) + (base32 "1df7bb9ba3m0c44fhmh8cs4hlkh4fffjwm8rz7l87lf5pdy7sg56")))) + (properties `((upstream-name . "harmony"))) (build-system r-build-system) - (propagated-inputs - (list r-cowplot - r-dplyr - r-ggplot2 - r-irlba - r-matrix - r-rcpp - r-rcpparmadillo - r-rcppprogress - r-rlang - r-tibble - r-tidyr)) - (native-inputs - (list autoconf)) - (home-page "https://github.com/immunogenomics/harmony") + (propagated-inputs (list r-cowplot + r-dplyr + r-ggplot2 + r-matrix + r-rcpp + r-rcpparmadillo + r-rcppprogress + r-rhpcblasctl + r-rlang + r-tibble)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/web/packages/harmony/index.html") (synopsis "Integration of single cell sequencing data") (description "This package provides an implementation of the Harmony algorithm for -single cell integration, described in Korsunsky et al -@url{doi.org/10.1101/461954}. The package includes a standalone Harmony -function and interfaces to external frameworks.") +single cell integration. This package includes a standalone Harmony function +and interfaces to external frameworks.") (license license:gpl3))) (define-public r-covr @@ -26912,14 +27260,14 @@ be used further by e.g. graphic devices.") (define-public r-graphlayouts (package (name "r-graphlayouts") - (version "1.0.2") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "graphlayouts" version)) (sha256 (base32 - "1mg0j9kcjp8dbpd8fy9vr5f35pz41v18vxc7q4pyl986pj859jam")))) + "14ib4yjcxb6zgci5h89p9swqabab57bzywwp96d3nhn620chap22")))) (properties `((upstream-name . "graphlayouts"))) (build-system r-build-system) (propagated-inputs @@ -26938,14 +27286,14 @@ emphasize hidden group structures in networks or focus on specific nodes.") (define-public r-terra (package (name "r-terra") - (version "1.7-65") + (version "1.7-71") (source (origin (method url-fetch) (uri (cran-uri "terra" version)) (sha256 (base32 - "0m9s5am8l6il1q0skab614cx0qjsb1i9xcv6nm0sdzj7p9lrzkfl")))) + "0dq47d5irkplgxcv0h0xgawwf9cc48vygg94zdiqppg5cspz7dqx")))) (properties `((upstream-name . "terra"))) (build-system r-build-system) (inputs @@ -26976,14 +27324,14 @@ files is supported.") (define-public r-tidygraph (package (name "r-tidygraph") - (version "1.3.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "tidygraph" version)) (sha256 (base32 - "11qlnpn54bdlkh2jcrk807z86vw54jrb6r9za1jkb03x9dqi9cwk")))) + "06mc31yb771midi8lq0zdfymcsm2s4y1mqdxxjz1n24njfxx9hda")))) (properties `((upstream-name . "tidygraph"))) (build-system r-build-system) (propagated-inputs @@ -27064,14 +27412,14 @@ in pipelines.") (define-public r-parameters (package (name "r-parameters") - (version "0.21.3") + (version "0.21.5") (source (origin (method url-fetch) (uri (cran-uri "parameters" version)) (sha256 (base32 - "091zpyq37v7xjicj4h4r4fqhrrc7d3hicgbdznsjn85sw4d7q595")))) + "0yxljycspmljj5s4i5knwyhxp29s616f7kg3xcwn0ip15kfg260v")))) (properties `((upstream-name . "parameters"))) (build-system r-build-system) (propagated-inputs @@ -27800,13 +28148,13 @@ such as Ghostscript is needed to use this package.") (define-public r-emoa (package (name "r-emoa") - (version "0.5-0.2") + (version "0.5-2") (source (origin (method url-fetch) (uri (cran-uri "emoa" version)) (sha256 (base32 - "0fr4ia3hkv8c7wkl64a51s6ynldppc812ynwldvbwy25dhlbvs6r")))) + "1a71xd8gdy27cfy09a4avjhc7d7idrljzan79cxb8qwb0pq9pvz9")))) (properties `((upstream-name . "emoa"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/emoa/") @@ -27983,14 +28331,14 @@ Adibi et al. (2019) @url{doi:10.1101/651901}.") (define-public r-smpracticals (package (name "r-smpracticals") - (version "1.4-3") + (version "1.4-3.1") (source (origin (method url-fetch) (uri (cran-uri "SMPracticals" version)) (sha256 (base32 - "0zxq84f9i3b86xx6msb25b61gyj9k09iab2b7wg4d93yas9qzayf")))) + "1xplp7ihy9ish7fqhc27bhvij9lk9w9mrs7lpdca38ppi4iiafi2")))) (properties `((upstream-name . "SMPracticals"))) (build-system r-build-system) (propagated-inputs @@ -28558,13 +28906,13 @@ columns, ad allows for quick addition of extra columns to a filematrix.") (define-public r-filesstrings (package (name "r-filesstrings") - (version "3.2.4") + (version "3.4.0") (source (origin (method url-fetch) (uri (cran-uri "filesstrings" version)) (sha256 (base32 - "1jl3jhkdjx5x00kllnkpvrlpsmzsvlgd6vhzdavd39zx4jzwjxw3")))) + "0p5vgrzbvipja9lgarygqphnr1z8vy9kl9n83jnfyvf0gp4ansl2")))) (properties `((upstream-name . "filesstrings"))) (build-system r-build-system) (propagated-inputs (list r-checkmate @@ -28642,14 +28990,14 @@ settings.") (define-public r-r-huge (package (name "r-r-huge") - (version "0.10.0") + (version "0.10.1") (source (origin (method url-fetch) (uri (cran-uri "R.huge" version)) (sha256 (base32 - "1wjcssvn76fblpivwkapdwcw08pygbkj7qskcl0wn8mda9w5f72b")))) + "1s3cg0kjaici6chgy21zhxwag9ldiif4103ajk121l8ambd1xjq5")))) (properties `((upstream-name . "R.huge"))) (build-system r-build-system) (propagated-inputs @@ -28666,14 +29014,14 @@ the @code{aroma.affymetrix} package.") (define-public r-r-filesets (package (name "r-r-filesets") - (version "2.15.0") + (version "2.15.1") (source (origin (method url-fetch) (uri (cran-uri "R.filesets" version)) (sha256 (base32 - "14dngx6ffhfvlaixpvlq890nwgil6zyaw8wy3dlcrv001wynzmms")))) + "1qwxk3p56yq06nsdl0jwbw6j8r6qjakznsd3z63gnpsgkckfkx88")))) (properties `((upstream-name . "R.filesets"))) (build-system r-build-system) (arguments @@ -28699,18 +29047,27 @@ identify file sets and individual files.") (define-public r-r-devices (package (name "r-r-devices") - (version "2.17.1") + (version "2.17.2") (source (origin (method url-fetch) (uri (cran-uri "R.devices" version)) (sha256 (base32 - "02cwdhb9m97gxi4pki4kasc5j3a12r7yzsychzzk9h0ijc1mfziv")))) + "15gcvhmqwqyl3n299l9znwcjri8d8vixwwv915162sfxabsylgj0")))) (properties `((upstream-name . "R.devices"))) (build-system r-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + ;; This is needed for the vignette builder + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs (list r-base64enc r-r-methodss3 r-r-oo r-r-utils)) + (native-inputs + (list r-r-rsp)) (home-page "https://github.com/HenrikBengtsson/R.devices") (synopsis "Unified handling of graphics devices") (description @@ -29417,14 +29774,14 @@ conditional on one covariate, and multimodal regression.") (define-public r-rainbow (package (name "r-rainbow") - (version "3.7") + (version "3.8") (source (origin (method url-fetch) (uri (cran-uri "rainbow" version)) (sha256 (base32 - "1cldipi3cb55d434wv03ymwygbisfwgq2b84gwwkgqpfal2xk78m")))) + "0gc25napmcgg1qr17z4zixzxcdiv9midi1x5fin4pzkhicl5d97c")))) (properties `((upstream-name . "rainbow"))) (build-system r-build-system) (propagated-inputs @@ -29773,14 +30130,14 @@ number embedded in the file rather than the file extension.") (define-public r-imager (package (name "r-imager") - (version "0.45.2") + (version "0.45.8") (source (origin (method url-fetch) (uri (cran-uri "imager" version)) (sha256 (base32 - "0mmzp55j1svlaa0lfmmaz8hijlkbk0wkv2craxhc6gyx0g5qp129")))) + "0vrv7m9b9w8xjqa9w17xvrmpl403476zr0l9wqdp9ir6ssvnaf2f")))) (properties `((upstream-name . "imager"))) (build-system r-build-system) (inputs @@ -30413,14 +30770,14 @@ these algorithms also detect anomalies (outliers).") (define-public r-idpmisc (package (name "r-idpmisc") - (version "1.1.20") + (version "1.1.21") (source (origin (method url-fetch) (uri (cran-uri "IDPmisc" version)) (sha256 (base32 - "0zy6mxqa8arq0vvhsdcifzm3085c23rnwa1n36fhircph1xwvfdw")))) + "1308z4i2glr1260zjjymm19g3d7nk8djhdwdfbh7ipvkgsp9b2s7")))) (properties `((upstream-name . "IDPmisc"))) (build-system r-build-system) (propagated-inputs @@ -30615,14 +30972,14 @@ Francesca Mazzia (2012).") (define-public r-lim (package (name "r-lim") - (version "1.4.7") + (version "1.4.7.1") (source (origin (method url-fetch) (uri (cran-uri "LIM" version)) (sha256 (base32 - "0d9bgyd0mnag8wds993dsvlbpkhyakydlzwc3nghxzv2n8504hjj")))) + "1ygzj3mc01jfdn7y938gsnnbf358n0jpddkiyc1zmvjig37yz180")))) (properties `((upstream-name . "LIM"))) (build-system r-build-system) (propagated-inputs @@ -30953,14 +31310,14 @@ first.") (define-public r-fracdiff (package (name "r-fracdiff") - (version "1.5-2") + (version "1.5-3") (source (origin (method url-fetch) (uri (cran-uri "fracdiff" version)) (sha256 (base32 - "0dzl011c92skf7hmx1zvdwsrashmfkxy9p2wig35nzr8609qhpxc")))) + "1h3zpy6j6w4w09nfh42jb58q0z5l3g4s556hza9zzzlj81mr940g")))) (properties `((upstream-name . "fracdiff"))) (build-system r-build-system) (home-page "https://github.com/mmaechler/fracdiff") @@ -31137,14 +31494,14 @@ and Euclidean distance is particularly fast.") (define-public r-isocodes (package (name "r-isocodes") - (version "2023.12.07") + (version "2024.02.12") (source (origin (method url-fetch) (uri (cran-uri "ISOcodes" version)) (sha256 (base32 - "03nrcv1hh12yyqql03cr94kk3hnpynvrm4kv3plmdli2b3n1yqvk")))) + "1rp2gasiggqfaqbag8wqz1rlhlajpji2klx0rgzms21lh28ppjq2")))) (properties `((upstream-name . "ISOcodes"))) (build-system r-build-system) (home-page "https://cran.r-project.org/package=ISOcodes") @@ -31452,13 +31809,13 @@ actuarial models such as pension mathematics.") (define-public r-matrixextra (package (name "r-matrixextra") - (version "0.1.14") + (version "0.1.15") (source (origin (method url-fetch) (uri (cran-uri "MatrixExtra" version)) (sha256 - (base32 "09c6f467sbqa65ny9si9acwkwy4kfvhy532vikr4cd16r89xxr01")))) + (base32 "0mp0si5923kfakwxcc08288zyx1nrrrpn9srcwax28vrz46l33z9")))) (properties `((upstream-name . "MatrixExtra"))) (build-system r-build-system) (propagated-inputs @@ -31721,14 +32078,14 @@ fairly comprehensive overview.") (define-public r-lisreltor (package (name "r-lisreltor") - (version "0.1.5") + (version "0.3") (source (origin (method url-fetch) (uri (cran-uri "lisrelToR" version)) (sha256 (base32 - "0i51v0x87277ly0kggdd594w6q4zq62b4n7xs9r25j08bzs82nfk")))) + "19xl85dkvjpdsmi6y8789zlyccwjf265alsd7985vbkqdzfvpgkb")))) (properties `((upstream-name . "lisrelToR"))) (build-system r-build-system) (home-page "https://cran.r-project.org/package=lisrelToR") @@ -31945,14 +32302,14 @@ well as Ravand and Robitzsch (2015).") (define-public r-tam (package (name "r-tam") - (version "4.1-4") + (version "4.2-21") (source (origin (method url-fetch) (uri (cran-uri "TAM" version)) (sha256 (base32 - "0b81d0g4j94yrfzj019jffxrk1aw24iscddp60kjbkrl5p7qy38g")))) + "0s6mygm3sypjd393f7hsxslqwqp2s1hihb5iv8z8dhc95vj845qd")))) (properties `((upstream-name . "TAM"))) (build-system r-build-system) (propagated-inputs @@ -32033,14 +32390,14 @@ Haberman's interaction model when all items are dichotomously scored.") (define-public r-iheatmapr (package (name "r-iheatmapr") - (version "0.7.0") + (version "0.7.1") (source (origin (method url-fetch) (uri (cran-uri "iheatmapr" version)) (sha256 (base32 - "0ym796kf6d8cwd7nmgzy3ga7r8fyywddl3rr2hbn4cfmwhggv02l")) + "1c4dvp0mvw3m6x0kdw05yja2rm1mkrjjmjfj67f0vvs5sqyaqwhv")) (snippet '(delete-file "inst/htmlwidgets/lib/plotlyjs/plotly-latest.min.js")))) @@ -32115,14 +32472,14 @@ and reproducible way.") (define-public r-rsconnect (package (name "r-rsconnect") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "rsconnect" version)) (sha256 (base32 - "0g2av3838nnsb51h64ypad0c31gh98zyhib8yf9ffg53ijyqmjs1")))) + "0snfzr2xf91630hd2w1q9yy09vlfdy4dzb9gc8g14nq9hh34h999")))) (properties `((upstream-name . "rsconnect"))) (build-system r-build-system) (propagated-inputs @@ -32266,14 +32623,14 @@ using the @code{rstan} and @code{rstanarm} packages).") (define-public r-rstantools (package (name "r-rstantools") - (version "2.3.1.1") + (version "2.4.0") (source (origin (method url-fetch) (uri (cran-uri "rstantools" version)) (sha256 (base32 - "0bp20jcdbscsm3s4ik86k3hfsdwkj2k6yzj41zwd0q8lq5afwq7j")))) + "1ajg7g425cmw9h9a8225szmacwyvdwl3x0k851fnqb1my2i2rxxz")))) (properties `((upstream-name . "rstantools"))) (build-system r-build-system) (inputs (list pandoc)) @@ -32294,19 +32651,19 @@ recommendations for developers.") (define-public r-loo (package (name "r-loo") - (version "2.6.0") + (version "2.7.0") (source (origin (method url-fetch) (uri (cran-uri "loo" version)) (sha256 - (base32 "040jk0zmpljq3ayd87bjy5vwwfy49im6kylp6z4wnqisypyn1nk6")))) + (base32 "0dnbbflglm7b29vr11rfrawnys9s3rl4h00h6xh9smjyalqz6r3n")))) (properties `((upstream-name . "loo"))) (build-system r-build-system) (inputs (list pandoc)) (propagated-inputs - (list r-checkmate r-matrixstats)) + (list r-checkmate r-matrixstats r-posterior)) (native-inputs (list r-knitr)) (home-page "https://mc-stan.org/loo/") @@ -32379,14 +32736,14 @@ need to derive the partial derivatives.") (define-public r-rstanarm (package (name "r-rstanarm") - (version "2.26.1") + (version "2.32.1") (source (origin (method url-fetch) (uri (cran-uri "rstanarm" version)) (sha256 (base32 - "0i24ah6mcvvb25pkynkacjn1l7dqk3yfnyk42fv32n83dqnpjm2a")))) + "1pj3s8yy8dwxfnxsd5rzd1hc7997bh5mg66zs83ljpbl0xi6qvaw")))) (properties `((upstream-name . "rstanarm"))) (build-system r-build-system) (inputs @@ -33026,14 +33383,14 @@ is also implemented here.") (define-public r-aws (package (name "r-aws") - (version "2.5-3") + (version "2.5-5") (source (origin (method url-fetch) (uri (cran-uri "aws" version)) (sha256 (base32 - "022igrvxlyi0ckl3c6chcm459kv213jxy5hrvc14m36yhn3xckhm")))) + "0nsc7fakwcppav2h2kys0j28ga2p2si4kbygfka955dmbiwv4z5j")))) (properties `((upstream-name . "aws"))) (build-system r-build-system) @@ -33061,7 +33418,8 @@ filter.") (uri (cran-uri "sglOptim" version)) (sha256 (base32 - "15bkkvgp9v9vsp65wps48g3c2fa0fj1025hbrziywq14j7wayyjr")))) + "15bkkvgp9v9vsp65wps48g3c2fa0fj1025hbrziywq14j7wayyjr")) + (patches (search-patches "r-sgloptim.patch")))) (properties `((upstream-name . "sglOptim"))) (build-system r-build-system) @@ -33353,27 +33711,19 @@ vignette for more information and examples.") (define-public r-distributional (package (name "r-distributional") - (version "0.3.2") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "distributional" version)) (sha256 (base32 - "1y08s301mxz7c54lxa1j0zzbsrgphxv5hsyam3jswcw274rxd0y8")))) + "00p6427lw65py24qr9rlhj1wg4z5wgszgmbmbxbpjk7dkckz7d89")))) (properties `((upstream-name . "distributional"))) (build-system r-build-system) (propagated-inputs - (list r-digest - r-farver - r-generics - r-ggplot2 - r-lifecycle - r-numderiv - r-rlang - r-scales - r-vctrs)) + (list r-generics r-lifecycle r-numderiv r-rlang r-vctrs)) (home-page "https://pkg.mitchelloharawild.com/distributional/") (synopsis "Vectorized probability distributions") (description @@ -33599,14 +33949,14 @@ permuted copies (shadows).") (define-public r-directlabels (package (name "r-directlabels") - (version "2023.8.25") + (version "2024.1.21") (source (origin (method url-fetch) (uri (cran-uri "directlabels" version)) (sha256 (base32 - "0p7as0yvvywbdqjpng70sdiy0xyczac4qbv534cwqxiqyx81vp8j")))) + "1zmnyqipiv6gxqi2ix5jzbql53p3kjv76l76kj7gv1llzy2a8fxv")))) (build-system r-build-system) (propagated-inputs (list r-quadprog)) @@ -33692,14 +34042,14 @@ counting and recursive k-means partitioning.") (define-public r-hardhat (package (name "r-hardhat") - (version "1.3.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "hardhat" version)) (sha256 (base32 - "0bp83yw7j34iwir2f73ainic11cdz0q18m5v1kbx8vdsw84z17zy")))) + "0v0vvvyy075f0j9ppqkhys6w2k7zmfdg0v77l430582nhrvp99hf")))) (properties `((upstream-name . "hardhat"))) (build-system r-build-system) (propagated-inputs @@ -33722,14 +34072,14 @@ input.") (define-public r-lightgbm (package (name "r-lightgbm") - (version "4.2.0") + (version "4.3.0") (source (origin (method url-fetch) (uri (cran-uri "lightgbm" version)) (sha256 (base32 - "0c0q597agzdaimy0q1mssdpm0pw4yvqq9w6n8syvgz1g5q0mcwqi")))) + "1kk2jj7d1adqi9x1q3jij7fy8h9vc6bvzcz7jhi4bd9cybw8gpnh")))) (properties `((upstream-name . "lightgbm"))) (build-system r-build-system) (propagated-inputs @@ -33958,13 +34308,13 @@ coefficients are constructed using multiplier bootstrap.") (define-public r-consrank (package (name "r-consrank") - (version "2.1.3") + (version "2.1.4") (source (origin (method url-fetch) (uri (cran-uri "ConsRank" version)) (sha256 (base32 - "0v1dr7zj2fpgncymakv5qszdrlqzvc5zxfyc3yrsj09gbm0gvyby")))) + "001hmiii7khh1q2wav38737svzr0anr42nyp8hhplqfbiw0cc4y2")))) (properties `((upstream-name . "ConsRank"))) (build-system r-build-system) (propagated-inputs (list r-gtools r-proxy r-rgl r-rlist r-tidyr)) @@ -33985,14 +34335,14 @@ Kemeny distance and correlation coefficient.") (define-public r-fastshap (package (name "r-fastshap") - (version "0.1.0") + (version "0.1.1") (source (origin (method url-fetch) (uri (cran-uri "fastshap" version)) (sha256 (base32 - "112hc585aryzc5pgvr3qaa7arlx2h2sj9jlq9xha3nncyzqkh7c6")))) + "1j6bnkv4q8n85xlvzm5p6p4yg8wdp6an6skbvdif5g9c376hzqb2")))) (properties `((upstream-name . "fastshap"))) (build-system r-build-system) (propagated-inputs @@ -34168,13 +34518,13 @@ diagonals. This package allows you to compute the tensor product of arrays.") (define-public r-spatstat-explore (package (name "r-spatstat-explore") - (version "3.2-5") + (version "3.2-6") (source (origin (method url-fetch) (uri (cran-uri "spatstat.explore" version)) (sha256 (base32 - "053wl87whmkkqp058lwzlwv0wydddizsni9m94f6kxgl5ahia1sc")))) + "0nj0iq8fjj4far5i1gbgirn7a4h90fj7qs6chwalsfzax4g3xksz")))) (properties `((upstream-name . "spatstat.explore"))) (build-system r-build-system) (propagated-inputs @@ -34208,13 +34558,13 @@ Kolmogorov-Smirnov, ANOVA) are also supported.") (define-public r-spatstat-model (package (name "r-spatstat-model") - (version "3.2-8") + (version "3.2-10") (source (origin (method url-fetch) (uri (cran-uri "spatstat.model" version)) (sha256 (base32 - "1x03fy921rq8dyr6jkpwnx7pf7fc5593mvnl8r1gz3sypnmp6p4d")))) + "0hl2pg5lhypqxlzrmf9sjp2m44g1yjbhnjff712x542vhwva889a")))) (properties `((upstream-name . "spatstat.model"))) (build-system r-build-system) (propagated-inputs @@ -34319,14 +34669,14 @@ package.") (define-public r-spatstat-geom (package (name "r-spatstat-geom") - (version "3.2-7") + (version "3.2-8") (source (origin (method url-fetch) (uri (cran-uri "spatstat.geom" version)) (sha256 (base32 - "13k85918zd2n64mxjwlgzd986zvs3is8vg06k9i195yymfrik65y")))) + "08q9k7065gpjmwja4xac9q8jv2hdkgmwvdncrnhdk9xkzc0z9mjb")))) (properties `((upstream-name . "spatstat.geom"))) (build-system r-build-system) (propagated-inputs @@ -34375,14 +34725,14 @@ user-level code from spatstat, except for the code for linear networks.") (define-public r-spatstat-linnet (package (name "r-spatstat-linnet") - (version "3.1-3") + (version "3.1-4") (source (origin (method url-fetch) (uri (cran-uri "spatstat.linnet" version)) (sha256 (base32 - "1ybjl5ccp9r5ilbihwzk93zcm46pbpldn3nfbfpdw458xh894r3q")))) + "1inqirh58q19mvf4wvnhm31418xfzd1ysvcxwda3g11pv8jq2g3d")))) (properties `((upstream-name . "spatstat.linnet"))) (build-system r-build-system) @@ -35291,17 +35641,20 @@ model.") (define-public r-igraph (package (name "r-igraph") - (version "1.6.0") + (version "2.0.2") (source (origin (method url-fetch) (uri (cran-uri "igraph" version)) (sha256 (base32 - "1f1v8pv3slmjw11w6a97885114whw6ykky3jviwj1rrqzcvwq3j1")))) + "0kfc9blyy54cz0m4mdzzwgvn0rkil49kdk438411mx62g2vxby9l")))) + (properties + `((upstream-name . "igraph") + (updater-extra-native-inputs . ("which")))) (build-system r-build-system) (native-inputs - (list gfortran r-knitr)) + (list gfortran pkg-config r-knitr which)) (inputs (list glpk gmp libxml2 zlib)) (propagated-inputs @@ -35311,7 +35664,8 @@ model.") r-magrittr r-matrix r-pkgconfig - r-rlang)) + r-rlang + r-vctrs)) (home-page "https://igraph.org") (synopsis "Network analysis and visualization") (description @@ -35324,14 +35678,14 @@ more.") (define-public r-workflows (package (name "r-workflows") - (version "1.1.3") + (version "1.1.4") (source (origin (method url-fetch) (uri (cran-uri "workflows" version)) (sha256 (base32 - "10a1my6glvc32zxrar1ir699lwav7iz2ji4s6g9iprjndf3nm8ms")))) + "120xfm12w8pfqjbmmzsyc01qnffbb1n514dgw9v9gmqdy5l70i6s")))) (properties `((upstream-name . "workflows"))) (build-system r-build-system) (propagated-inputs @@ -35420,14 +35774,14 @@ object sizes.") (define-public r-yardstick (package (name "r-yardstick") - (version "1.2.0") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "yardstick" version)) (sha256 (base32 - "0aqxnxhyy0bdfm09b7jpzba6c4g5r6l4h48q2xfxsm353nni7wgb")))) + "0b0jdb6ybi3i76vycv13905xdkhqa1xz4b4b9675xqmnx2301yy4")))) (properties `((upstream-name . "yardstick"))) (build-system r-build-system) (propagated-inputs @@ -35439,7 +35793,8 @@ object sizes.") r-rlang r-tibble r-tidyselect - r-vctrs)) + r-vctrs + r-withr)) (native-inputs (list r-knitr)) (home-page "https://github.com/tidymodels/yardstick") @@ -35624,14 +35979,14 @@ prediction of kriging models.") (define-public r-dials (package (name "r-dials") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "dials" version)) (sha256 (base32 - "1zj8f47jzgaydp3cff96w0kx1gm208vyq3f77p3g59nc01r0wri4")))) + "0xrvvz4pkzmjsizjqfcvpn6f1cl9yp56lyc2iw8vcvwa18gb6szf")))) (properties `((upstream-name . "dials"))) (build-system r-build-system) (propagated-inputs @@ -35984,14 +36339,14 @@ analysis using @code{dplyr}, @code{ggplot2}, and other Tidy tools.") (define-public r-parsnip (package (name "r-parsnip") - (version "1.1.1") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "parsnip" version)) (sha256 (base32 - "1j0bkmv2m4rxmnpq3rqha5jccjxai11m5392hb4dgzni7in36h92")))) + "1wggqsvfl2kg8hx9ci6g0fsm2dw9lw6fs7kfy7sdqx6qd7r8bak0")))) (properties `((upstream-name . "parsnip"))) (build-system r-build-system) (propagated-inputs @@ -36025,18 +36380,19 @@ functions or computational engines (e.g. R, Spark, Stan, etc).") (define-public r-infer (package (name "r-infer") - (version "1.0.5") + (version "1.0.6") (source (origin (method url-fetch) (uri (cran-uri "infer" version)) (sha256 (base32 - "1zs1c22zc255m23in99cqp2chpdkski002rywmkdzwf6nd96mly7")))) + "0rlb7l6jl6f5kgzd9s08bifgvyafvjyfpazgqzl0w1ki875642n1")))) (properties `((upstream-name . "infer"))) (build-system r-build-system) (propagated-inputs (list r-broom + r-cli r-dplyr r-generics r-ggplot2 @@ -36060,14 +36416,14 @@ expressive statistical grammar that coheres with the Tidy design framework.") (define-public r-modeldata (package (name "r-modeldata") - (version "1.2.0") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "modeldata" version)) (sha256 (base32 - "15d29497bbarb3qyib4g584hscfviv0cg62195s26qg1q6l022ac")))) + "035gyxgs9byij9d5vpw35a96f7xlhfj3k6c140mql4yfplm5rk23")))) (properties `((upstream-name . "modeldata"))) (build-system r-build-system) (propagated-inputs @@ -36375,14 +36731,14 @@ designs. Broman et al. (2018) <doi:10.1534/genetics.118.301595>.") (define-public r-seqminer (package (name "r-seqminer") - (version "9.3") + (version "9.4") (source (origin (method url-fetch) (uri (cran-uri "seqminer" version)) (sha256 (base32 - "07dig3ydybmi55qy1zpkxpw568midgc1bzdl3k36734yqnsp2sjs")))) + "0m9ysdq4ch4c2i3d86gd32rbi0v637djvr295wzzwgkflk66sz5c")))) (build-system r-build-system) (inputs (list zlib)) @@ -36397,14 +36753,14 @@ data (variant call format, e.g. VCF or BCF) or meta-analysis results in R.") (define-public r-maldiquant (package (name "r-maldiquant") - (version "1.22.1") + (version "1.22.2") (source (origin (method url-fetch) (uri (cran-uri "MALDIquant" version)) (sha256 (base32 - "0721j8lzv6ywv0hf8rjw446dmvl18gm5ymf5a35fg9vnprfsalha")))) + "1zygmn8cny5r4s0ni2kgqbg2xzjvjh9rzmqnw256jg0035qb0lb0")))) (properties `((upstream-name . "MALDIquant"))) (build-system r-build-system) (native-inputs @@ -37146,13 +37502,13 @@ are.") (define-public r-mlr3misc (package (name "r-mlr3misc") - (version "0.13.0") + (version "0.14.0") (source (origin (method url-fetch) (uri (cran-uri "mlr3misc" version)) (sha256 (base32 - "0b565hy86bcgjv8k9qipkcgsag6jiiv1jx5lgi1iddcf8rg6bind")))) + "19q20ld2phplrg6jqg849rjpi8yl3j5v1d8bgzagyyhka3nxn4fx")))) (build-system r-build-system) (propagated-inputs (list r-backports r-checkmate r-data-table r-digest r-r6)) @@ -38111,17 +38467,22 @@ user streams, and to parse the output into data frames.") (define-public r-strex (package (name "r-strex") - (version "1.6.1") + (version "2.0.0") (source (origin (method url-fetch) (uri (cran-uri "strex" version)) (sha256 (base32 - "1vz5zrvf052bg2y48yvkci4hciknvyw5gpbvnklgyny5lzlqvyiq")))) + "1cxkpqwnpsqkg0i6n6bkkgbf3jkbgff5s8db95rz57lki8xwlqp9")))) (properties `((upstream-name . "strex"))) (build-system r-build-system) (propagated-inputs - (list r-checkmate r-magrittr r-rlang r-stringi r-stringr)) + (list r-checkmate + r-lifecycle + r-magrittr + r-rlang + r-stringi + r-stringr)) (native-inputs (list r-knitr)) (home-page "https://rorynolan.github.io/strex/") (synopsis "Extra string manipulation functions") @@ -38135,14 +38496,14 @@ functionalities in strex.") (define-public r-readods (package (name "r-readods") - (version "2.1.0") + (version "2.2.0") (source (origin (method url-fetch) (uri (cran-uri "readODS" version)) (sha256 (base32 - "1znp039wfbq8bbjj9pdkl8hwnhm9x5n8c7y5b53xmpnaqxx5agiz")))) + "1f87bnvjxalr0gp651axpyq4abzirxq7l3mirbak0c4b4l2phb1n")))) (properties `((upstream-name . "readODS"))) (build-system r-build-system) (propagated-inputs @@ -38258,55 +38619,53 @@ or into raw bitmap vectors for further processing in R.") (define-public r-antiword (package (name "r-antiword") - (version "1.3.1") + (version "1.3.3") (source - (origin - (method url-fetch) - (uri (cran-uri "antiword" version)) - (sha256 - (base32 - "123v8zlczwh6fr1v3x7dl3885xlmddq1bqlcxih8zh07w0hlk1k2")) - (modules '((guix build utils))) - (snippet - '(begin - ;; unvendor libantiword - (delete-file-recursively "src") - #t)))) - (properties `((upstream-name . "antiword"))) + (origin + (method url-fetch) + (uri (cran-uri "antiword" version)) + (sha256 + (base32 + "1cc355sldhsbpx9wl5hkx0ydkgd3racxhkrriv58yw5xbb3b18ff")) + (modules '((guix build utils))) + ;; unvendor libantiword + (snippet + '(delete-file-recursively "src")))) + (properties + `((upstream-name . "antiword") + (updater-extra-inputs . ("antiword")))) (build-system r-build-system) (arguments - '(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'use-system-antiword - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "R/antiword.R" - (("system.file\\(\"bin\", package = \"antiword\"\\)") - (string-append "\"" (assoc-ref inputs "antiword") "/bin\""))) - #t))))) + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'use-system-antiword + (lambda _ + (substitute* "R/antiword.R" + (("system.file\\(\"bin\", package = \"antiword\"\\)") + (string-append "\"" #$(this-package-input "antiword") "/bin\"")))))))) (inputs (list antiword)) (propagated-inputs (list r-sys)) - (home-page - "https://github.com/ropensci/antiword#readme") - (synopsis - "Extract Text from Microsoft Word Documents") + (home-page "https://github.com/ropensci/antiword#readme") + (synopsis "Extract text from Microsoft Word documents") (description - "Wraps the @code{AntiWord} utility to extract text from Microsoft Word -documents. The utility only supports the old @code{doc} format, not the new -xml based @code{docx} format. Use the @code{xml2} package to read the -latter.") + "This package wraps the @code{AntiWord} utility to extract text from +Microsoft Word documents. The utility only supports the old @code{doc} +format, not the new XML based @code{docx} format. Use the @code{xml2} package +to read the latter.") (license license:gpl2))) (define-public r-readtext (package (name "r-readtext") - (version "0.90") + (version "0.91") (source (origin (method url-fetch) (uri (cran-uri "readtext" version)) (sha256 (base32 - "01hscqmjb3fz4iqqgi0l2s1z48a53a25jnsxb0cdd631c97alqrh")))) + "0bzaq0vx6c83i4xf7p9zwka7h7jbv1qfy6w4v3kljx30hl048dpn")))) (properties `((upstream-name . "readtext"))) (build-system r-build-system) (propagated-inputs @@ -38362,14 +38721,14 @@ and formatted text files with additional meta-data, such including @code{.csv}, (define-public r-lwgeom (package (name "r-lwgeom") - (version "0.2-13") + (version "0.2-14") (source (origin (method url-fetch) (uri (cran-uri "lwgeom" version)) (sha256 (base32 - "0rqw2nhac832b9v2hdz6wwc51iykh86x5qrq0azlibr9q242i0ph")))) + "174jpsri9xpr9zb5hvzqhbhnajqw3aa38ajy1skl7ky8vgvnrnr6")))) (properties `((upstream-name . "lwgeom"))) (build-system r-build-system) (inputs @@ -38467,14 +38826,14 @@ supply the workflow to create thematic maps. This package also facilitates (define-public r-rtweet (package (name "r-rtweet") - (version "1.2.1") + (version "2.0.0") (source (origin (method url-fetch) (uri (cran-uri "rtweet" version)) (sha256 (base32 - "18ynravc5vz7ywm1n7ww48gx06dndcishl6lq8nqajxsjwiphq3r")))) + "1w41a1a5mgg06gvs468vrg9pax2nrnkiqhwllxmkk0i7s15gvi42")))) (properties `((upstream-name . "rtweet"))) (build-system r-build-system) (propagated-inputs @@ -39266,14 +39625,14 @@ C API for topology operations on geometries.") (define-public r-tfruns (package (name "r-tfruns") - (version "1.5.1") + (version "1.5.2") (source (origin (method url-fetch) (uri (cran-uri "tfruns" version)) (sha256 (base32 - "1xk7dl51xd1h54798xwycvxmn77jv80in61hanm36zk0024wpxg8")))) + "1iw80r31jddngby48wf53ayjhvvx77kas4hvvp7j65klvx337aqw")))) (properties `((upstream-name . "tfruns"))) (build-system r-build-system) (propagated-inputs @@ -39323,17 +39682,16 @@ Tensorflow graphs.") (define-public r-tensorflow (package (name "r-tensorflow") - (version "2.14.0") + (version "2.15.0") (source (origin (method url-fetch) (uri (cran-uri "tensorflow" version)) (sha256 (base32 - "1zv7b3r8c2nzyrq295pvdf3kv2mz7cmm4adck508qr12rb9d5ybx")))) + "16650x0skqi4nyd2zmgdfj574gnw98k00d13rap7n95cv7sv9abw")))) (properties `((upstream-name . "tensorflow"))) (build-system r-build-system) - (inputs (list tensorflow)) (propagated-inputs (list r-config r-lifecycle @@ -40800,14 +41158,14 @@ be efficient and easy to use.") (define-public r-ggh4x (package (name "r-ggh4x") - (version "0.2.7") + (version "0.2.8") (source (origin (method url-fetch) (uri (cran-uri "ggh4x" version)) (sha256 (base32 - "114xvlpdhnsdnw1g89yls3z80dxcj9fah09kvfddhlwbqbknxjxf")))) + "1vk2xqf1m14zy0jynv73f56a3slrpa9nymvw236v9ixgafarwkm8")))) (properties `((upstream-name . "ggh4x"))) (build-system r-build-system) (propagated-inputs |