diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 14 |
1 files changed, 7 insertions, 7 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cc92d55ac4..ec703bc25e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1665,7 +1665,7 @@ similar.") (description "This package implements methods for batch correction and integration of scRNA-seq datasets, based on the Seurat anchor-based integration framework. -In particular, STACAS is optimized for the integration of heterogenous +In particular, STACAS is optimized for the integration of heterogeneous datasets with only limited overlap between cell sub-types (e.g. TIL sets of CD8 from tumor with CD8/CD4 T cells from lymphnode), for which the default Seurat alignment methods would tend to over-correct biological differences. @@ -1694,7 +1694,7 @@ information about cell-types in order to assist the integration process.") (home-page "https://github.com/vertesy/Stringendo") (synopsis "Stringendo is a string parsing library") (description - "This package provides string parsing functionalites for generating + "This package provides string parsing functionalities for generating plotnames, filenames and paths.") (license license:gpl3)))) @@ -3752,7 +3752,7 @@ operations: @item index the reference genome before alignment; @item align reads to the corresponding reference genome; @item pre-process by convert pair-end reads into fragments, checking the - mapping quality score, alingment and filtration; + mapping quality score, alignment and filtration; @item create the cell-by-bin matrix. @end itemize") (license license:asl2.0))) @@ -3859,7 +3859,7 @@ use-case, we encourage users to compose functions to achieve their goals.") '(list "-k" (string-append ;; Unclear why this one fails. There is no backtrace. "not test_to_dataframe_is_sparse" - ;; These need skbio, but that neeeds biom-format. + ;; These need skbio, but that needs biom-format. " and not test_align_tree_intersect_obs" " and not test_align_tree_intersect_tips" " and not test_align_tree_sample")) @@ -13272,7 +13272,7 @@ variation, gene modules and their regulatory models and more.") r-snow)) (native-inputs (list r-knitr)) (home-page "https://github.com/TillBirkner/metadeconfoundR") - (synopsis "Check multiple covariates for potenial confounding effects") + (synopsis "Check multiple covariates for potential confounding effects") (description "This package detects naive associations between omics features and metadata in cross-sectional data-sets using non-parametric tests. In a second @@ -18688,7 +18688,7 @@ interaction inference from scRNA-seq data.") (synopsis "Annotation, analysis and visualization of circRNA data") (description "Circus is an R package for annotation, analysis and visualization of circRNA data. Users can annotate their circRNA candidates -with host genes, gene featrues they are spliced from, and discriminate between +with host genes, gene features they are spliced from, and discriminate between known and yet unknown splice junctions. Circular-to-linear ratios of circRNAs can be calculated, and a number of descriptive plots easily generated.") (license license:artistic2.0))) @@ -20540,7 +20540,7 @@ phase + query phase).") (define-public filtlong ;; The recommended way to install is to clone the git repository ;; https://github.com/rrwick/Filtlong#installation - ;; and the lastest release is more than nine months old + ;; and the latest release is more than nine months old (let ((commit "d1bb46dfe8bc7efe6257b5ce222c04bfe8aedaab") (revision "1")) (package |