gnu: python-pytorch: Update to 2.2.1 and unbundle dependencies.

Autogenerated files are also regenerated. The tests can be run, but are
disabled, as they require a long time.

* gnu/packages/machine-learning.scm (python-pytorch): Update to 2.2.1.
[version]: Use %python-pytorch-version.
[source]: Use %python-pytorch-src.
[arguments]: Remove 'make-things-writable phase.  Add 'cmake-patches,
'disable-avx-dependencies, 'set-max-jobs, 'codegen1, 'codegen2, 'build2,
'install2 phases. Adjust 'use-system-libraries and 'check phases.
[native-inputs]: Add doxygen, ideep-pytorch, pocketfft-cpp, python-expecttest,
python-pytest-flakefinder, python-pytest-rerunfailures-13,
python-pytest-shard, python-pytest-xdist, python-hypothesis,
python-types-dataclasses, python-typing-extensions-4.10 and valgrind.
[inputs]: Add asmjit, clog, flatbuffers-next, foxi, fxdiv, libuv,
miniz-for-pytorch, qnnpack, qnnpack-pytorch and oneapi-dnnl. Use nnpack,
oneapi-dnnl, qnnpack, qnnpack-pytorch and xnnpack only for supported systems.
[propagated-inputs]: Add python-filelock, python-fsspec, python-jinja2,
python-networkx, python-opt-einsum, python-optree, python-packaging,
python-psutil and python-sympy. Remove python-cffi and python-six. Use cpuinfo
only for supported systems.
(%python-pytorch-src)[source]: Add patches.
(python-pytorch2): Remove variable.
* gnu/packages/patches/python-pytorch-runpath.patch: Adjust patch.
* gnu/packages/patches/python-pytorch-system-libraries.patch: Adjust patch.
* gnu/packages/patches/python-pytorch-1.9.0-system-libraries.patch: Remove file.
* gnu/packages/patches/python-pytorch-fix-codegen.patch: New file.
* gnu/packages/patches/python-pytorch-without-kineto: New file.
* gnu/local.mk (dist_patch_DATA): Register them.

1 files changed, 16 insertions, 3 deletions

diff --git a/gnu/packages/patches/python-pytorch-runpath.patch b/gnu/packages/patches/python-pytorch-runpath.patch
index 7f95b88a2b..2c1724cdb0 100644
--- a/gnu/packages/patches/python-pytorch-runpath.patch
+++ b/gnu/packages/patches/python-pytorch-runpath.patch
@@ -3,10 +3,10 @@ get installed, quite surprisingly, to 'lib/python3.8/site-packages/{bin,lib}'.
 Make sure RUNPATH matches that.
 
 diff --git a/caffe2/CMakeLists.txt b/caffe2/CMakeLists.txt
-index 5b5622f0..30d27e57 100644
+index 74836372..c8eb69d1 100644
 --- a/caffe2/CMakeLists.txt
 +++ b/caffe2/CMakeLists.txt
-@@ -1909,7 +1909,7 @@ if(BUILD_PYTHON)
+@@ -1910,7 +1910,7 @@ if(BUILD_PYTHON)
    if(${BUILDING_WITH_TORCH_LIBS})
      # site-packages/caffe2/python/caffe2_pybind11_state
      # site-packages/torch/lib
@@ -16,7 +16,7 @@ index 5b5622f0..30d27e57 100644
  
    # Must also include `CMAKE_SHARED_LINKER_FLAGS` in linker flags for
 diff --git a/cmake/Dependencies.cmake b/cmake/Dependencies.cmake
-index ee9cf410..f190e69b 100644
+index acc95842..8f8fb7d7 100644
 --- a/cmake/Dependencies.cmake
 +++ b/cmake/Dependencies.cmake
 @@ -4,7 +4,7 @@ if(APPLE)
@@ -28,3 +28,16 @@ index ee9cf410..f190e69b 100644
  endif(APPLE)
  # Use separate rpaths during build and install phases
  set(CMAKE_SKIP_BUILD_RPATH  FALSE)
+diff --git a/functorch/CMakeLists.txt b/functorch/CMakeLists.txt
+index f2f32745..db21b656 100644
+--- a/functorch/CMakeLists.txt
++++ b/functorch/CMakeLists.txt
+@@ -21,7 +21,7 @@ target_link_libraries(${PROJECT_NAME} PRIVATE pybind::pybind11)
+ 
+ set_target_properties(${PROJECT_NAME} PROPERTIES LIBRARY_OUTPUT_DIRECTORY
+       ${CMAKE_BINARY_DIR}/functorch)
+-set_target_properties(${PROJECT_NAME} PROPERTIES INSTALL_RPATH "${_rpath_portable_origin}/../torch/lib")
++set_target_properties(${PROJECT_NAME} PROPERTIES INSTALL_RPATH "$ORIGIN/../torch/lib")
+ 
+ # Copy-pasted prefix/suffix logic for Python extensions from
+ # https://github.com/pytorch/pytorch/blob/33bb8ae350611760139457b85842b1d7edf9aa11/caffe2/CMakeLists.txt#L1975