Merge branch 'master' into staging.

With "conflicts" solved (all in favor of master except git) in:
	gnu/local.mk
	gnu/packages/databases.scm
	gnu/packages/glib.scm
	gnu/packages/gnome.scm
	gnu/packages/gnupg.scm
	gnu/packages/gnuzilla.scm
	gnu/packages/graphics.scm
	gnu/packages/gstreamer.scm
	gnu/packages/gtk.scm
	gnu/packages/linux.scm
	gnu/packages/machine-learning.scm
	gnu/packages/networking.scm
	gnu/packages/polkit.scm
	gnu/packages/pulseaudio.scm
	gnu/packages/rpc.scm
	gnu/packages/rust.scm
	gnu/packages/version-control.scm
	gnu/packages/w3m.scm

1 files changed, 57 insertions, 63 deletions

diff --git a/gnu/packages/orange.scm b/gnu/packages/orange.scm
index bedbad7e60..2b6fc00abc 100644
--- a/gnu/packages/orange.scm
+++ b/gnu/packages/orange.scm
@@ -34,13 +34,13 @@
 (define-public python-orange-canvas-core
   (package
     (name "python-orange-canvas-core")
-    (version "0.1.19")
+    (version "0.1.24")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "orange-canvas-core" version))
        (sha256
-        (base32 "03wav2msfm32y8zwq69v1v6qyh1ld76xla2z60avf49yhbwjgwal"))))
+        (base32 "0m3dszdkc5bc80ahcvrqxz8jahs33js9cx1mc6rc9ihysq2ddnfz"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -51,17 +51,15 @@
              (substitute* "orangecanvas/application/tests/test_mainwindow.py"
                (("test_help_requests") "_test_help_requests"))
              (setenv "HOME" "/tmp")
-             (setenv "QT_QPA_PLATFORM" "offscreen")
-             #t)))))
+             (setenv "QT_QPA_PLATFORM" "offscreen"))))))
     (propagated-inputs
-     `(("python-anyqt" ,python-anyqt)
-       ("python-cachecontrol" ,python-cachecontrol)
-       ("python-commonmark" ,python-commonmark)
-       ("python-dictdiffer" ,python-dictdiffer)
-       ("python-docutils" ,python-docutils)
-       ("python-pyqt" ,python-pyqt)
-       ("python-qasync" ,python-qasync)
-       ("python-requests" ,python-requests)))
+     (list python-anyqt
+           python-cachecontrol
+           python-commonmark
+           python-dictdiffer
+           python-docutils
+           python-qasync
+           python-requests))
     (home-page "https://github.com/biolab/orange-canvas-core")
     (synopsis "Core component of Orange Canvas")
     (description
@@ -73,13 +71,13 @@ data-mining application.")
 (define-public python-orange-widget-base
   (package
     (name "python-orange-widget-base")
-    (version "4.12.0")
+    (version "4.16.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "orange-widget-base" version))
        (sha256
-        (base32 "13sy3s8rdqs3i3ghixljpqvnfz81qmbb0kqlasw39zvf39qc22kz"))))
+        (base32 "0a0sijsvzijj71sxq8ckpgz59z1cq9sxn4fya3z23ibdzjzwrsi7"))))
     (build-system python-build-system)
     (arguments
      `(;; unittest fails to load one test, all other tests are passing:
@@ -90,14 +88,10 @@ data-mining application.")
          (add-before 'check 'check-setup
            (lambda _
              (setenv "HOME" "/tmp")
-             (setenv "QT_QPA_PLATFORM" "offscreen")
-             #t)))))
+             (setenv "QT_QPA_PLATFORM" "offscreen"))))))
     (propagated-inputs
-     `(("python-anyqt" ,python-anyqt)
-       ("python-matplotlib" ,python-matplotlib)
-       ("python-orange-canvas-core"
-        ,python-orange-canvas-core)
-       ("python-pyqtgraph" ,python-pyqtgraph)))
+     (list python-anyqt python-matplotlib python-orange-canvas-core
+           python-pyqtgraph python-typing-extensions))
     (home-page "https://github.com/biolab/orange-widget-base")
     (synopsis "Base Widget for Orange Canvas")
     (description
@@ -108,13 +102,13 @@ GUI based workflow.  It is primarily used in the Orange framework.")
 (define-public orange
   (package
     (name "orange")
-    (version "3.28.0")
+    (version "3.31.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "Orange3" version))
        (sha256
-        (base32 "1ac4xjjkx06z10hl7k0zh1z3qhkl5vng15l9jkpkmck9spinbzil"))))
+        (base32 "0jqay46nysgfxldik7f6mfi8iylai2gwfpq60vklrfi1rhqf3pn6"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -131,11 +125,12 @@ GUI based workflow.  It is primarily used in the Orange framework.")
              ;; We use a correct version of PyQtWebEngine, but the build scripts
              ;; consider it incorrect anyways. Remove the constraint entirely to
              ;; work around this bug.
-             (substitute* "requirements-gui.txt" (("PyQtWebEngine>=5.12") ""))
-             #t))
-         (add-before 'check 'set-HOME
+             (substitute* "requirements-pyqt.txt" (("PyQtWebEngine>=5.12") ""))))
+         (add-before 'check 'pre-check
            ;; Tests need a writable home.
-           (lambda _ (setenv "HOME" "/tmp") #t))
+           (lambda _
+             (setenv "HOME" "/tmp")
+             (setenv "QT_QPA_PLATFORM" "offscreen")))
          (add-after 'install 'wrap-executable
            ;; Ensure that icons are found at runtime.
            (lambda* (#:key inputs outputs #:allow-other-keys)
@@ -143,43 +138,42 @@ GUI based workflow.  It is primarily used in the Orange framework.")
                (wrap-program (string-append out "/bin/orange-canvas")
                  `("QT_PLUGIN_PATH" prefix
                    ,(list (string-append (assoc-ref inputs "qtsvg")
-                                         "/lib/qt5/plugins/")))))
-             #t)))))
+                                         "/lib/qt5/plugins/"))))))))))
     (native-inputs
-     `(("python-cython" ,python-cython)))
+     (list python-cython))
     (inputs
-     `(("python-anyqt" ,python-anyqt)
-       ("python-baycomp" ,python-baycomp)
-       ("python-bottleneck" ,python-bottleneck)
-       ("python-chardet" ,python-chardet)
-       ("python-httpx" ,python-httpx)
-       ("python-joblib" ,python-joblib)
-       ("python-keyring" ,python-keyring)
-       ("python-keyrings.alt" ,python-keyrings.alt)
-       ("python-louvain" ,python-louvain)
-       ("python-matplotlib" ,python-matplotlib)
-       ("python-networkx" ,python-networkx)
-       ("python-numpy" ,python-numpy)
-       ("python-openpyxl" ,python-openpyxl)
-       ("python-opentsne" ,python-opentsne)
-       ("python-orange-canvas-core"
-        ,python-orange-canvas-core)
-       ("python-orange-widget-base"
-        ,python-orange-widget-base)
-       ("python-pandas" ,python-pandas)
-       ("python-pyqt" ,python-pyqt)
-       ("python-pyqtgraph" ,python-pyqtgraph)
-       ("python-pyqtwebengine" ,python-pyqtwebengine)
-       ("python-pyyaml" ,python-pyyaml)
-       ("python-requests" ,python-requests)
-       ("python-scikit-learn" ,python-scikit-learn)
-       ("python-scipy" ,python-scipy)
-       ("python-serverfiles" ,python-serverfiles)
-       ("python-xlrd" ,python-xlrd)
-       ("python-xlsxwriter" ,python-xlsxwriter)
-       ("qtbase" ,qtbase-5)
-       ("qtsvg" ,qtsvg)
-       ("xdg-utils" ,xdg-utils)))
+     (list python-anyqt
+           python-baycomp
+           python-bottleneck
+           python-chardet
+           python-httpx
+           python-joblib
+           python-keyring
+           python-keyrings.alt
+           python-louvain
+           python-matplotlib
+           python-networkx
+           python-numpy
+           python-openpyxl
+           python-opentsne
+           python-orange-canvas-core
+           python-orange-widget-base
+           python-pandas
+           python-pygments
+           python-pyqt
+           python-pyqtgraph
+           python-pyqtwebengine
+           python-pyyaml
+           python-qtconsole
+           python-requests
+           python-scikit-learn
+           python-scipy
+           python-serverfiles
+           python-xlrd
+           python-xlsxwriter
+           qtbase-5
+           qtsvg
+           xdg-utils))
     (home-page "https://orangedatamining.com/")
     (synopsis "Component-based data mining framework")
     (description
@@ -199,7 +193,7 @@ data analysis, data mining and data visualization.")
         (base32 "1qgbzgnaxj4wsp2rdas53qxsh0j7xpibq25w6lviwyaqwwrgq42y"))))
     (build-system python-build-system)
     (propagated-inputs
-     `(("python-requests" ,python-requests)))
+     (list python-requests))
     (home-page "https://github.com/biolab/serverfiles")
     (synopsis "Utility to access files on a HTTP server and store them locally")
     (description