diff options
| author | Ricardo Wurmus <[email protected]> | 2021-06-05 00:33:00 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <[email protected]> | 2021-06-05 09:12:39 +0200 |
| commit | f98837a6baca957098d073d5bb8d440ddf9ffefb (patch) | |
| tree | 2de3aa9177dd416ac0d51fa908565d4843589f67 | |
| parent | 7382aa00b82860762bc326dec6b45f8cd2161327 (diff) | |
gnu: pigx-rnaseq: Update to 0.0.13.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.13.
[arguments]: Remove obsolete substitutions.
[inputs]: Remove fastqc and trim-galore; add hisat2 and fastp.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 12 |
1 files changed, 5 insertions, 7 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c1cfabc27f..dab097381a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10355,7 +10355,7 @@ once. This package provides tools to perform Drop-seq analyses.") (define-public pigx-rnaseq (package (name "pigx-rnaseq") - (version "0.0.10") + (version "0.0.13") (source (origin (method url-fetch) (uri (string-append "https://github.com/BIMSBbioinfo/pigx_rnaseq/" @@ -10363,7 +10363,7 @@ once. This package provides tools to perform Drop-seq analyses.") "/pigx_rnaseq-" version ".tar.gz")) (sha256 (base32 - "0z3hr120wk2vrlmlpz1vp3n9wy3rq4y2mnzh2vf08qgqn2xfdwcw")))) + "0z9zid2c8q16lfzlnjd63nparknhv31qgv4h79algmvhkakm2pgk")))) (build-system gnu-build-system) (arguments `(#:parallel-tests? #f ; not supported @@ -10373,19 +10373,17 @@ once. This package provides tools to perform Drop-seq analyses.") (add-after 'unpack 'disable-resource-intensive-test (lambda _ (substitute* "Makefile.in" - (("(^ tests/test_trim_galore/test.sh).*" _ m) m) (("^ tests/test_multiqc/test.sh") "") - (("^ test.sh") "")) - #t))))) + (("^ test.sh") ""))))))) (inputs `(("coreutils" ,coreutils) ("sed" ,sed) ("gzip" ,gzip) ("snakemake" ,snakemake) - ("fastqc" ,fastqc) ("multiqc" ,multiqc) ("star" ,star-for-pigx) - ("trim-galore" ,trim-galore) + ("hisat2" ,hisat2) + ("fastp" ,fastp) ("htseq" ,htseq) ("samtools" ,samtools) ("r-minimal" ,r-minimal) |