From 664721422cd17c151df00b9ecab268d1aa18e3b3 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 21 Nov 2021 00:39:57 +0100 Subject: gnu: python-scanpy: Use GUIX_PYTHONPATH. * gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Use GUIX_PYTHONPATH instead of PYTHONPATH. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 56492f5192..05febb31ce 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11956,10 +11956,10 @@ (define-public python-scanpy ;; packaged yet. (delete-file "scanpy/tests/external/test_scanorama_integrate.py") - (setenv "PYTHONPATH" + (setenv "GUIX_PYTHONPATH" (string-append (getcwd) ":" (assoc-ref inputs "python-anndata:source") ":" - (getenv "PYTHONPATH"))) + (getenv "GUIX_PYTHONPATH"))) (invoke "pytest" "-vv" "-k" ;; Plot tests that fail. -- cgit v1.2.3