From 9e72ac0e0c288192443f494ccc82fac984a6dd2f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 1 Dec 2024 08:33:49 +0100 Subject: gnu: r-xcms: Disable tests. * gnu/packages/bioconductor.scm (r-xcms)[arguments]: Disable tests. [properties]: Tell updater to ignore r-faahko. [native-inputs]: Add r-msdata. Change-Id: I2ee167828534a4046d15d740f6f25d8eff9d589f --- gnu/packages/bioconductor.scm | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) (limited to 'gnu/packages/bioconductor.scm') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e4426c3a68..dc5b08aec4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -19365,7 +19365,13 @@ (define-public r-xcms (sha256 (base32 "1i9xiilrwvnzkdbzrdnbsw0sbwplfaklbsk3wz8kzv87ivipybh5")))) + (properties + '((upstream-name . "xcms") + ;; Avoid dependency cycle. + (updater-ignored-native-inputs . ("r-faahko")))) (build-system r-build-system) + ;; Tests require faahKO, which depends on this package. + (arguments (list #:tests? #false)) (propagated-inputs (list r-biobase r-biocgenerics @@ -19386,7 +19392,7 @@ (define-public r-xcms r-spectra r-summarizedexperiment)) (native-inputs - (list r-knitr r-testthat)) + (list r-knitr r-msdata r-testthat)) (home-page "https://bioconductor.org/packages/xcms/") (synopsis "LC/MS and GC/MS mass spectrometry data analysis") (description -- cgit v1.2.3