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2023-07-13gnu: netdde: Resurrect and update to 2.6.32.65-2-e67c284ac1.Janneke Nieuwenhuizen
* gnu/packages/patches/netdde-build-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/hurd.scm (netdde)[source]: Update to e67c284ac113d939b10b4578334f27dab29d5b08 and use it. [inputs]: Add zlib:static. [arguments]: Remove #true from build phases. In 'build' phase, remove obsolete CFLAGS, and also build static version. In 'install' phase, install them in <out>/hurd. There is no check target, so set #:tests? to #false. Signed-off-by: Josselin Poiret <[email protected]>
2023-07-13gnu: gnumach: Support "noide" argument.Janneke Nieuwenhuizen
* gnu/packages/patches/gnumach-support-noide.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/hurd.scm (gnumach-headers): Use it. * doc/guix.texi (Bootloader Configuration): Document it. Signed-off-by: Josselin Poiret <[email protected]>
2023-07-13bootloader: grub: Use rumpdisk-style root when booting with "noide".Janneke Nieuwenhuizen
* gnu/bootloader/grub.scm (make-grub-configuration): When "noide" is in arguments, use device name "wd0" rather than "hd0". Signed-off-by: Josselin Poiret <[email protected]>
2023-07-13system: hurd: Boot with pci.arbiter and rumpdisk.Janneke Nieuwenhuizen
* gnu/system.scm (hurd-multiboot-modules): Add commands for pci.arbiter and rumpdisk. Signed-off-by: Josselin Poiret <[email protected]>
2023-07-13services: childhurd: Bump default qemu memory to 2048MB.Janneke Nieuwenhuizen
When booting with pci-arbiter and rumpdisk and using 1024MB of memory for qemu, booting hangs, or seems to hang, at the end of the rumpdisk boot messages. At least 1200MB is required, currently. * gnu/services/virtualization.scm (<hurd-vm-configuration>)[memory-size]: Bump to 2048. * gnu/system/examples/bare-hurd.tmpl: Suggest using 2048 here too. Update example `guix system image' and "qemu" command lines too. Signed-off-by: Josselin Poiret <[email protected]>
2023-07-13hurd-boot: Setup pci-arbiter and rumpdisk translators.Janneke Nieuwenhuizen
* gnu/build/hurd-boot.scm (make-hurd-device-nodes): Create "servers/bus/pci. (set-hurd-device-translators): Create transators for pci-arbiter, rumpdisk, and /dev/wd0..3s1..4. Signed-off-by: Josselin Poiret <[email protected]>
2023-07-13gnu: hurd: Add rumpkernel.Janneke Nieuwenhuizen
* gnu/packages/patches/hurd-fix-rumpdisk-build.patch, gnu/packages/patches/hurd-rumpdisk-no-hd.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/hurd.scm (hurd): Use them. (hurd)[inputs]: Replace util-linux with util-linux:static, add parted, rumpkernel. [arguments]: Rename `prepare-dde' phase to 'prepare-addons'. Add "rumpdisk" directory. Add --enable-static-progs=... option to #:configure-flags, and remove --without-parted. Signed-off-by: Josselin Poiret <[email protected]>
2023-07-13gnu: parted: Support building for the Hurd.Janneke Nieuwenhuizen
* gnu/packages/disk.scm (parted)[inputs]: Remove lvm2, add hurd-minimal when building for the Hurd. [arguments]: Add configure-flag '--disable-device-mapper' when building for the Hurd. Signed-off-by: Josselin Poiret <[email protected]>
2023-07-13gnu: hurd-minimal: Include libshouldbeinlibc and libstore.Janneke Nieuwenhuizen
* gnu/packages/hurd.scm (hurd-minimal)[inputs]: Add gnumach-headers. [arguments]: Rewrite to include libshouldbeinlibc and libstore. * gnu/packages/cross-base.scm (cross-kernel-headers*): Update xhurd-minimal accordingly: Add xgnumach-headers, add them to cpath, use gexps for modify-phases, add delete-shared-target phase. Signed-off-by: Josselin Poiret <[email protected]>
2023-07-13gnu: Add rumpkernel.Janneke Nieuwenhuizen
This uses the Debian Salsa rumpkernel package git as upstream as that is where delopment happens. Once things have stabalized upstream may change to the NetBSD git from where Debian takes their snapshots. * gnu/packages/hurd.scm (rumpkernel): New variable. (hurd-headers)[native-inputs]: Use cross-mig directly. (gnumach)[native-inputs]: Likewise. (hurd)[native-inputs]: Likewise. Signed-off-by: Josselin Poiret <[email protected]>
2023-07-13gnu: hurd: Update libpciaccess to 0.17.Janneke Nieuwenhuizen
As suggested by youpi on IRC https://logs.guix.gnu.org/hurd/2023-05-17.log#132259 libpciaccess-0.16 is too old for the Hurd and would need Hurd-specific patches while libpciaccess-0.17 works out of the box. * gnu/packages/hurd.scm (hurd)[inputs]: Use libpciaccess-0.17. (netdde)[inputs]: Likewise. Signed-off-by: Josselin Poiret <[email protected]>
2023-07-13gnu: Add libpciaccess-0.17.Janneke Nieuwenhuizen
* gnu/packages/xorg.scm (libpciaccess-0.17): New variable. Signed-off-by: Josselin Poiret <[email protected]>
2023-07-13gnu: hurd: Update to v0.9.git20230216.Josselin Poiret
* gnu/packages/hurd.scm (hurd-headers): Update to v0.9.git20230216.
2023-07-13gnu: mig: Update to 1.8+git20230520.Josselin Poiret
* gnu/packages/hurd.scm (mig)[source]: Update to 1.8+git20230520. * gnu/packages/patches/gnumach-add-missing-const_mach_port_name_array_t-type.patch: Drop patch. * gnu/local.mk (dist_patch_DATA): Unregister it.
2023-07-13gnu: gnumach: Update to 1.8+git20221224.Josselin Poiret
* gnu/packages/hurd.scm (gnumach-headers): Update to 1.8+git20221224.
2023-07-13gnu: Add libc-for-target and glibc/hurd.Josselin Poiret
* gnu/packages/patches/glibc-2.37-hurd-clock_t_centiseconds.patch * gnu/packages/patches/glibc-2.37-hurd-local-clock_gettime_MONOTONIC.patch * gnu/packages/patches/glibc-2.37-versioned-locpath.patch: New patches. * gnu/local.mk (dist_patch_DATA): Register them. * gnu/packages/base.scm (glibc/hurd, libc-for-target): New variables. (glibc/hurd-headers): Use glibc/hurd. * gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)[outputs, source, arguments] (glibc-final)[source]: Use libc-for-target instead of glibc. * gnu/packages/cross-base.scm (cross-libc/deprecated, cross-libc*): Use libc-for-target. This part fixes https://issues.guix.gnu.org/63641#25 * gnu/packages/commencement.scm (%final-inputs): Change to memoized lambda taking "system". * gnu/packages/commencement.scm (canonical-package): Likewise, and update user, passing (%current-system). (make-gcc-toolchain): Update user, passing (%current-system). * gnu/packages/base.scm (%final-inputs): Likewise. * guix/scripts/refresh.scm (options->update-specs): Likewise. * guix/build-system/gnu.scm (standard-packages): Add optional "system" parameter. (lower): Update caller. Co-authored-by: Ludovic Courtès <[email protected]> Co-authored-by: Janneke Nieuwenhuizen <[email protected]>
2023-07-13gnu: hurd: Update supported systems.Josselin Poiret
* gnu/packages/hurd.scm (gnumach-headers, hurd-headers, hurd-minimal, hurd-core-headers, gnumach): Update supported systems to %hurd-systems.
2023-07-13gnu: gnumach-headers: Cross-build without relying on x86.Josselin Poiret
* gnu/packages/hurd.scm (gnumach-headers): Remove configure flags where we say the builder is running x86. * gnu/packages/cross-base.scm (cross-gnumach-headers): Work around limitation of build system, by manually changing the target host_cpu without relying on --host, because we don't have a working cross-compiler yet.
2023-07-13gnu: glibc/hurd-headers: Properly cross-build.Josselin Poiret
* gnu/packages/base.scm (glibc/hurd-headers): Rely on cross-mig, and remove hardcoded configure flag `--host=i586-pc-gnu`. * gnu/packages/cross-base.scm (cross-kernel-headers*): Add `--host` and `--build` configure flags.
2023-07-13gnu: arpack-ng: Update to 3.9.0.Ludovic Courtès
* gnu/packages/maths.scm (arpack-ng): Update to 3.9.0. [source]: Add 'patches'. [build-system]: Switch to CMAKE-BUILD-SYSTEM. [native-inputs]: Remove AUTOCONF, AUTOMAKE, and LIBTOOL. (arpack-ng-openmpi)[inputs]: Use 'modify-inputs'. [arguments]: Use gexps. * gnu/packages/patches/arpack-ng-propagate-rng-state.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2023-07-13gnu: sssd: Update to 2.9.1.Timotej Lazar
* gnu/packages/sssd.scm (sssd): Update to 2.9.1. [native-inputs]: Add bc. * gnu/packages/patches/sssd-system-directories.patch: Adjust for new version. Signed-off-by: Ludovic Courtès <[email protected]>
2023-07-13gnu: clang-runtime-15: Fix address sanitizer supportTobias Kortkamp
$ guix shell clang-toolchain@15 -- clang -o test -fsanitize=address test.c ld: cannot find /gnu/store/i429h17s15g48ir9vl1bzp3cv39l5pib-clang-runtime-15.0.7/lib/linux/libclang_rt.asan_static-x86_64.a: No such file or directory ld: cannot find /gnu/store/i429h17s15g48ir9vl1bzp3cv39l5pib-clang-runtime-15.0.7/lib/linux/libclang_rt.asan-x86_64.a: No such file or directory clang-15: error: linker command failed with exit code 1 (use -v to see invocation) * gnu/packages/llvm.scm (clang-runtime-15): Fix address sanitizer support by bringing back the static libraries. Signed-off-by: Ludovic Courtès <[email protected]>
2023-07-13gnu: libleak: Update to 0.3.6.fanquake
* gnu/packages/debug.scm (libleak): Update to 0.3.6.
2023-07-12gnu: Add r-numbat.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-numbat): New variable.
2023-07-12gnu: Add r-bpcells.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bpcells): New variable.
2023-07-12gnu: nyxt: Update to 3.4.0.Andre A. Gomes
* gnu/packages/web-browsers.scm (nyxt): Update to 3.4.0. Signed-off-by: Guillaume Le Vaillant <[email protected]>
2023-07-12gnu: strace: Update to 6.4.Michael Ford
* gnu/packages/linux.scm (strace): Update to 6.4. Signed-off-by: Guillaume Le Vaillant <[email protected]>
2023-07-12gnu: go: Add CPU tuning targets.Efraim Flashner
* gnu/packages/golang.scm (go-1.17)[properties]: New field. (%go-1.17-arm-micro-architectures, %go-1.17-powerpc64le-micro-architectures, %go-1.18-x86_64-micro-architectures): New variables. (go-1.18)[properties]: New field.
2023-07-12gnu: %gcc-11-x86_64-micro-architectures: Add psabi entries.Efraim Flashner
* gnu/packages/gcc.scm (%gcc-11-x86_64-micro-architectures): Add entries for x86_64-v{1,2,3,4}.
2023-07-12gnu: r-tcgabiolinks: Update to 2.28.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.28.3.
2023-07-12gnu: r-bionero: Update to 1.8.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.5. [propagated-inputs]: Remove r-ggnewscale and r-networkd3; add r-ggdendro and r-rlang.
2023-07-12gnu: r-biocthis: Update to 1.10.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.3.
2023-07-12gnu: r-basilisk: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.12.1.
2023-07-12gnu: r-delayedmatrixstats: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.1.
2023-07-12gnu: r-sparsematrixstats: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.12.2.
2023-07-12gnu: r-fishpond: Update to 2.6.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.6.2.
2023-07-12gnu: r-bioccheck: Update to 1.36.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.36.1.
2023-07-12gnu: r-universalmotif: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.18.1.
2023-07-12gnu: r-variancepartition: Update to 1.30.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.30.2.
2023-07-12gnu: r-variantfiltering: Update to 1.36.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.36.1.
2023-07-12gnu: r-quasr: Update to 1.40.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.40.1.
2023-07-12gnu: r-motifbreakr: Update to 2.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.14.2.
2023-07-12gnu: r-lpsymphony: Update to 1.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.28.1. [native-inputs]: Add gfortran.
2023-07-12gnu: r-glmgampoi: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.2.
2023-07-12gnu: r-interactionset: Update to 1.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.28.1.
2023-07-12gnu: r-matrixgenerics: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.12.2.
2023-07-12gnu: r-systempiper: Update to 2.6.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.6.3.
2023-07-12gnu: r-summarizedexperiment: Update to 1.30.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.2.
2023-07-12gnu: r-maaslin2: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.14.1. [propagated-inputs]: Remove r-lpsymphony; add r-tibble.
2023-07-12gnu: r-limma: Update to 3.56.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.2.
generated by cgit v1.2.3 (git 2.45.2) at 2025-03-25 12:17:29 +0000