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2025-02-10gnu: Add python-nibabel.Vinicius Monego
* gnu/packages/python-science.scm (python-nibabel): New variable. Change-Id: I27d3841def6f360ae3996aacb787142bcfa92291 Signed-off-by: Andreas Enge <[email protected]>
2025-02-07gnu: python-pandas-1: Disable failing test.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas-1):[arguments]: Disable failing test_nat_comparisons. Change-Id: Ifdd3cfb244e03b9412c7caa458557ce3fd30e38a
2025-01-28gnu: python-unyt: Update to 3.0.3, fix build.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-unyt): Update to 3.0.3. Fix build. Change-Id: Ic894ddfa982b9d41b40fc7e18149de099dd705f6
2025-01-28gnu: Add python-scikit-misc.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-misc): New variable. Change-Id: I8fb3c46fe8a927e5d2fbd3222a423330e771379e
2025-01-27gnu: python-deepdish: Fix indentation.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-deepdish): Fix indentation. Change-Id: Idf8a0b5cdb9e371cb5d1f5f51f993da6209342d5
2025-01-27gnu: python-deepdish: Update to 0.3.7-0.3f2dff7, fix build.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-deepdish): Update to 0.3.7-0.3f2dff7. [source]: Swap to git checkout containing fixes for NumPy. [native-inputs]: Add python-pytest. Change-Id: Icbc8c0895bcac0bdfede65ac7b6006186c684a70
2025-01-27gnu: python-pods: Update to 0.1.17.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pods): Update to 0.1.17. [native-inputs]: Remove python-setuptools and python-wheel; add python-poetry-core. Change-Id: I68db152ec47c54ffb92528863e9faedec11440ac
2025-01-27gnu: python-paramz: Add missing inputs, fix build.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-paramz): [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I3d33d04f523a214995e82d03d5bb1ce669962398
2025-01-27gnu: python-pods: Fix build.Felix Gruber
* gnu/packages/python-science.scm (python-pods): Fix build. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I758d7a45e8e7baf436abe3c0b2ad92241c0bab48
2025-01-20gnu: python-libneuroml: Update to 0.6.5.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-libneuroml): Update to 0.6.5. Fix build. [propagated-inputs]: Remove python-six; add python-natsort and python-networkx. Change-Id: I750f90cebdeba46286239b18569300a2e4ce8c80
2025-01-20gnu: python-modin: Update to 0.32.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-modin): Update to 0.32.0. [build-system]: Use pyproject-build-system. [arguments]: Remove phase 'make-files-writable; disable one test; update custom 'check phase. [propagated-inputs]: Add python-s3fs. [native-inputs]: Add python-boto3 and python-wheel. Change-Id: I1d74013902e3387945586192b88c1e4fd8256733
2025-01-20gnu: python-pynetdicom: Update to 2.1.1.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pynetdicom): Update to 2.1.1. [native-inputs]: Add python-codespell, python-coverage, python-poetry-core, python-pytest-cov, python-pytest-xdist, python-sphinx, and python-sphinx-rtd-theme; remove python-pyfakefs, python-setuptools, and python-wheel. [propagated-inputs]: Add python-mypy, python-numpydoc, and python-pyfakefs. Change-Id: Ic0089df89cd34b50c31370581db7a6e88884199c
2025-01-20gnu: python-spin: Fix build.宋文武
* gnu/packages/python-science.scm (python-spin)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ieeaa5f7186e51a16022910da89704e8cc282d935
2025-01-20gnu: python-xarray-schema: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray-schema)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: I7cecc17468f94c9987ed349b0dd0d319e175e399
2025-01-20gnu: python-xarray-datatree: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray-datatree)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: I5c2d5ec44b13c82e7400687accccf81427aa0da9
2025-01-20gnu: python-fastcluster: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-fastcluster)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: I2fa034054f5183e04c2f1e673f841f07799a7b94
2025-01-20gnu: python-cvxpy: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-cvxpy)[native-inputs]: Add python-wheel. Change-Id: I66f4f504a0a4101abc845b7b7d0a0fccbd6b91b9
2025-01-20gnu: python-scikit-survival: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-survival)[native-inputs]: Add python-setuptools. Change-Id: I52e98c787cec226590f21c98e4287a41fb41f3d3
2025-01-20gnu: python-qdldl: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-qdldl)[native-inputs]: Add python-wheel. Change-Id: I6bca560b20a9c259eae95c09edcf10ead685ec21
2025-01-20gnu: python-osqp: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-osqp)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ief43d97442a98935dea1499c67e022e9beb5359e
2025-01-20gnu: python-scikit-fuzzy: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-fuzzy)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Idbaf5fa622b3584f8fd348ec0783605936d3bf41
2025-01-20gnu: python-scikit-allel: Update to 1.3.13.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-allel): Update to 1.3.13. [propagated-inputs]: Remove python-click. [native-inputs]: Remove python-scipy. Change-Id: I3c29bd3d9f87d0866da747c344740bad71cae1c3
2025-01-20gnu: python-scikit-opt: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-opt)[native-inputs]: Add python-setuptools. Change-Id: Id14e3964257e250c1ba597c6d8fe1a0410fa475f
2025-01-20gnu: python-traittypes: Fix tests.Ricardo Wurmus
* gnu/packages/python-science.scm (python-traittypes)[arguments]: Add phase 'numpy-compatibility. Change-Id: I41d55d65d0dafd44029de38b3044d9fad378db50
2025-01-20gnu: python-pandas-2: Restrict number of test processes.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Restrict to at most four processes. Change-Id: I8ee4cb29ad922e9b853515b5f0e8f8aabca52c92
2025-01-20gnu: python-pandas-2: Remove X.Ricardo Wurmus
These tests are not run anyway, so there is no need to launch an X server. * gnu/packages/python-science.scm (python-pandas-2)[arguments]: Rename 'prepare-x phase to 'pre-check. [native-inputs]: Remove xorg-server-for-tests. Change-Id: Ib85883360397d2715a1893b74435d96a1d119f9e
2025-01-20gnu: python-pythran: Update to 0.17.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pythran): Update to 0.17.0. [build-system]: Use pyproject-build-system. [source]: Remove obsolete snippet. [arguments]: Remove phase 'do-not-install-third-parties and custom 'check phase; use #:test-flags and add 'pre-check phase. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I49ebdd21cfb0668dd84f0d12c460a86ed694c7d6
2025-01-20gnu: python-scikit-build-core: Update to 0.10.7.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-build-core): Update to 0.10.7. [native-inputs]: Add python-pytest-subprocess. Change-Id: I3da5a9e5d59900335deee2d4a5a1c80d1dd7c5ab
2025-01-20gnu: python-qdldl: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-qdldl)[native-inputs]: Add python-setuptools. Change-Id: I5f4c5b8f368da21da1f7d5c5cedd7a806dbdd709
2025-01-01gnu: python-upsetplot: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-upsetplot)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ibddb6f183345af29dfce218145c7c8c83aa9c244
2024-12-21gnu: python-mpl-scatter-density: Fix buld.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-mpl-scatter-density): [native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ica320293019ae3e88e2b0654e356bc4d1be50626
2024-12-21gnu: python-supersmoother: Fix buildSharlatan Hellseher
* gnu/packages/python-science.scm (python-supersmoother): [native-inputs]: Add python-pytest, python-setuptools, and python-wheel. Change-Id: I33f151e74d54b6e0647b3cfae73c063522c35ea3
2024-12-21gnu: python-trimesh: Update to 4.5.3.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-trimesh): Update to 4.5.3, fix build. [arguments] <phases>: Remove 'fix-build, as resolved upstream. Delete 'sanity-check. Change-Id: I9320912764506a8c0d0bd7f300dca98b32ce4333
2024-12-19gnu: Add pyre.Maxim Cournoyer
* gnu/packages/python-science.scm (pyre): New variable. Change-Id: I4a26d7a83f24210104cb0ab50b5392ab97d9bfc4
2024-12-17gnu: python-pandas-stubs: Update to 2.2.3.241126.Maxim Cournoyer
* gnu/packages/python-science.scm (python-pandas-stubs): Update to 2.2.3.241126. [arguments]: Ignore tests/test_io.py in #:test-flags. [native-inputs]: Replace python-sqlalchemy with python-sqlalchemy-2. Change-Id: If27b3a5b687ca230a209e8a8087a89802414912e
2024-12-17gnu: Add python-ndindex.Maxim Cournoyer
Adapted from <https://raw.githubusercontent.com/Blosc/python-blosc2/refs/heads/main/.guix/modules/python-blosc2-package.scm>. * gnu/packages/python-science.scm (python-ndindex): New variable. Co-authored-by: Ivan Vilata i Balaguer <[email protected]> Change-Id: I38fbcbd8859c2ddbfdd39e8d84a63b20deef75c4
2024-12-15gnu: python-xarray: Disable bad tests.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray)[arguments]: Disable two tests. Change-Id: Ia9799a5bd247907ee875925431cd0fe2714f51b3
2024-12-13gnu: Remove python-typeguard-4.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-typeguard-4): Delete variable. * gnu/packages/python-check.scm (python-icontract) [native-inputs]: Remove python-typeguard-4; add python-typeguard. * gnu/packages/python-science.scm (python-pandera) [propagated-inputs]: Remove python-typeguard-4; add python-typeguard. Change-Id: Ie20deee06629452c804fa6f62b1bd1f67038bc86
2024-12-13gnu: python-pandas-2: Update to 2.2.3.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pandas-2): Update to 2.2.3. [arguments]<test-flags>: Ignore move failing test which require optional dependencies. [native-inputs]: Remove python-cython-0.29.35; add python-cython-3. Change-Id: I402627132c9f0771470d89dea986c92855ae4ced
2024-12-13gnu: Remove python-pytest-next.Sharlatan Hellseher
* gnu/packages/check.scm (python-pytest-next): Delete variable. * gnu/packages/python-science.scm (python-pandas-2) [native-inputs]: Remove python-pytest-next; add python-pytest. * gnu/packages/python-xyz.scm (python-hy) [native-inputs]: Remove python-pytest-next; add python-pytest. Change-Id: I57e14aa11c2e3cd1d8e8119f566b49fd902c7957
2024-12-13gnu: python-fast-histogram: Adjust inputs.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-fast-histogram) [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I53e2ce8019c421894e50138099539021a91f7c24
2024-12-13gnu: python-distributed: Adjust inputs.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-distributed) [native-inputs]: Add python-wheel. Change-Id: I9c8620c04f7ed75af6900b885b58937621af15f9
2024-12-13gnu: python-scikit-fem: Update to 10.0.2.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-scikit-fem): Update to 10.0.2. Improve style. [arguments]<test-flags>: Skip some failing tests. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I4efe9f0e93d315c7b979bf3160fa5a3a97ab2115
2024-12-13gnu: python-unyt: Adjust inputs.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-unyt): Shift the order of native and propagated inuts, add missing. [native-inputs]: Add python-setuptools-scm. Change-Id: Ibb1606be89743ac7d90fcafeaa75eae7ccfd756c
2024-12-13gnu: python-pandera: Adjust inputs.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pandera) [native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ic0a46a11f0410a5d4a29dce8416a9d3ff89f471f
2024-12-13gnu: build-system/pyproject: Add missing native-inputs.Nicolas Graves
* gnu/packages/bioinformatics.scm (python-ega-download-client) [native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/databases.scm (datasette)[native-inputs]: Add python-pip. * gnu/packages/django.scm (python-django-localflavor, python-django-contact-form)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/graphviz.scm (python-uqbar)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/jupyter.scm (python-jupyterlab-server)[native-inputs]: Add python-wheel. (python-nbstripout)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/machine-learning.scm (python-captum, python-linear-operator, python-gpytorch)[native-inputs]: Add python-setuptools. * gnu/packages/music.scm (abjad, abjad-ext-rmarkers, abjed-ext-nauert, python-mutagen)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/package-management.scm (python-conda-package-handling)[native-inputs]: Add python-setuptools and python-wheel. (conda)[native-inputs]: Add python-wheel. * gnu/packages/python-check.scm (python-pyinstrument, python-pytest-testmon, python-pytest-trio, python-nbval, python-pytest-toolbox)[native-inputs]: Add python-setuptools and python-wheel. (python-nptyping)[native-inputs]: Add python-setuptools. * gnu/packages/python-check.scm (python-dask-expr)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/python-web.scm (parfive, python-aioftp, python-hupper, python-sanic, python-mechanicalsoup, python-tinycss, python-aiostream, python-cbor2, gunicorn)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/python-xyz.scm (python-apprise, python-jaraco-classes, python-sparse, python-shtab, python-pyan3)[native-inputs]: Add python-setuptools. (python-jupytext, python-orderedmultidict, python-identify, python-nodeenv, python-cfgv, python-zarr, python-multipart, python-nbconvert, python-cram, python-immutables, python-numpydoc, python-cairosvg, python-unidecode, python-black, python-multidict, python-mpv-jsonipc, python-humanize, python-cmd2)[native-inputs]: Add python-setuptools and python-wheel. (python-partd, python-dask, python-zarr)[native-inputs]: Add python-wheel. (python-nbconvert)[propagated-inputs]: Add texlive-etoolbox. Remove duplicate textlive-jknapltx. (python-isort)[native-inputs]: Add python-pip. * gnu/packages/simulation.scm (python-fenics-dijitso)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/sphinx.scm (python-pydata-sphinx-theme, python-sphinx-autodoc-typehints)[native-inputs]: Add python-setuptools. * gnu/packages/syndication.scm (tuir)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/terminals.scm (python-halo)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/time.scm (python-arrow, python-dateutil) [native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/version-control.scm (pre-commit)[native-inputs]: Add python-setuptools and python-wheel. Remove input labels. * gnu/packages/virtualization.scm (python-qemu-qmp, python-transient)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/xorg.scm (python-xcffib)[native-inputs]: Add python-setuptools and python-wheel. Signed-off-by: Nicolas Goaziou <[email protected]> Change-Id: Id61cf8cdc47bd4c2871c0a9c8e9a5bfd51157df0
2024-12-13gnu: Add python-setuptools/python-wheel where necessary.Lars-Dominik Braun
Changes to pyproject-build-system require explicit dependency on setuptools/wheel. Change-Id: Icd7699fc1dc56e974ae7568f2ae916dbf876bea5
2024-12-13build-system/pyproject: Use python-sans-pip-wrapper as default-python.Lars-Dominik Braun
Also adds python-setuptools and python-wheel to relevant packages, either to native-inputs or to propagated inputs if the pkg_resources Python module is loaded at runtime. * guix/build-system/pyproject.scm (default-python): Default to python-sans-pip-wrapper. Change-Id: I2d986c2225114f54459dd6bb360913106e52cdf4
2024-12-10gnu: Fix synopsis in various python packages.Gabriel Wicki
* gnu/packages/python-compression.scm (python-inflate64): Fix synopsis. * gnu/packages/python-science.scm (python-xarray-dataclasses): Fix synopsis. * gnu/packages/python-web.scm (python-waybackpack): Fix synopsis. * gnu/packages/python-xyz.scm (python-mir-eval): Fix synopsis. (python-restructuredtext-lint): Fix synopsis. (python-pixelmatch): Fix synopsis. (python-google-pasta): Fix synopsis. (python-xmp-toolkit): Fix synopsis. * gnu/packages/bioinformatics.scm (python-mgatk): Fix synopsis. * gnu/packages/rpc.scm (python-grpc-stubs): Fix synopsis. * gnu/packages/simulation.scm (python-commonroad-io): Fix synopsis. Signed-off-by: Vagrant Cascadian <[email protected]>
2024-12-04gnu: packages/python-science: Update copyright header.Sharlatan Hellseher
* gnu/packages/python-science.scm: Update copyright header for Antero Mejr <[email protected]> . Change-Id: I4153d51d74f7de1629d5a7851346021b77e7352d
generated by cgit v1.2.3 (git 2.45.2) at 2025-04-07 15:45:31 +0000