diff options
Diffstat (limited to 'gnu/packages/rdf.scm')
| -rw-r--r-- | gnu/packages/rdf.scm | 157 |
1 files changed, 92 insertions, 65 deletions
diff --git a/gnu/packages/rdf.scm b/gnu/packages/rdf.scm index fb84d8053d..e3a26cf734 100644 --- a/gnu/packages/rdf.scm +++ b/gnu/packages/rdf.scm @@ -7,6 +7,7 @@ ;;; Copyright © 2020 Pjotr Prins <[email protected]> ;;; Copyright © 2020 Efraim Flashner <[email protected]> ;;; Copyright © 2020 pukkamustard <[email protected]> +;;; Copyright © 2022 Marius Bakke <[email protected]> ;;; ;;; This file is part of GNU Guix. ;;; @@ -24,6 +25,7 @@ ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. (define-module (gnu packages rdf) + #:use-module (guix gexp) #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) #:use-module (guix git-download) @@ -48,6 +50,7 @@ #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages qt) @@ -70,10 +73,7 @@ "1vc02im4mpc28zxzgli68k6j0dakh0k3s389bm436yvqajxg19xd")))) (build-system gnu-build-system) (inputs - `(("curl" ,curl) - ("libxml2" ,libxml2) - ("libxslt" ,libxslt) - ("zlib" ,zlib))) + (list curl libxml2 libxslt zlib)) (arguments `(#:parallel-tests? #f)) (home-page "https://librdf.org/raptor/") @@ -105,8 +105,8 @@ HTML and JSON.") "clucene-contribs-lib.patch")))) (build-system cmake-build-system) (inputs - `(("boost" ,boost) ; could also use bundled copy - ("zlib" ,zlib))) + (list boost ; could also use bundled copy + zlib)) (arguments `(#:test-target "cl_test" #:configure-flags '("-DBUILD_CONTRIBS_LIB=ON") @@ -126,7 +126,7 @@ Java Lucene text search engine API to C++.") (define-public lucene++ (package (name "lucene++") - (version "3.0.7") + (version "3.0.8") (source (origin (method git-fetch) (uri (git-reference @@ -135,19 +135,35 @@ Java Lucene text search engine API to C++.") (file-name (git-file-name name version)) (sha256 (base32 - "06b37fly6l27zc6kbm93f6khfsv61w792j8xihfagpcm9cfz2zi1")))) + "12v7r62f7pqh5h210pb74sfx6h70lj4pgfpva8ya2d55fn0qxrr2")) + (modules '((guix build utils))) + (snippet + #~(begin + (substitute* (list "src/config/core/CMakeLists.txt" + "src/config/contrib/CMakeLists.txt") + (("include/pkgconfig") + "lib/pkgconfig") + (("include/cmake") + "share/cmake/lucene++")))))) (build-system cmake-build-system) (arguments - `(#:configure-flags - ;; CXX_FLAGS suggested in a closed issue on github: - ;; https://github.com/luceneplusplus/LucenePlusPlus/issues/100 - (list "-Wno-dev" "-DCMAKE_CXX_FLAGS=-DBOOST_VARIANT_USE_RELAXED_GET_BY_DEFAULT" - ;; Install in lib64 break rpath - "-DCMAKE_INSTALL_LIBDIR:PATH=lib"))) + (list #:configure-flags + #~(list (string-append "-DLIB_DESTINATION:PATH=" + #$output "/lib") + "-DINSTALL_GTEST:BOOL=OFF") + #:phases + #~(modify-phases %standard-phases + (replace 'check + ;; XXX Tests are built unconditionally during the 'build phase. + ;; There's no ‘test’ target. README.md suggests running this. + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "src/test/lucene++-tester" + "--test_dir=../source/src/test/testfiles"))))))) (native-inputs - `(("pkg-config" ,pkg-config))) + (list pkg-config)) (inputs - `(("boost" ,boost))) + (list boost zlib)) (home-page "https://github.com/luceneplusplus/LucenePlusPlus") (synopsis "Text search engine") (description "Lucene++ is an up to date C++ port of the popular Java @@ -186,10 +202,7 @@ Lucene library, a high-performance, full-featured text search engine.") ("cyrus-sasl" ,cyrus-sasl) ("zlib" ,zlib))) (native-inputs - `(("autoconf" ,autoconf) - ("automake" ,automake) - ("libtool" ,libtool) - ("pkg-config" ,pkg-config))) + (list autoconf automake libtool pkg-config)) (home-page "https://github.com/swh/LRDF") (synopsis "Lightweight RDF library for accessing LADSPA plugin metadata") (description @@ -212,17 +225,13 @@ taxonomic inference capability.") "0z6rrwn4jsagvarg8d5zf0j352kjgi33py39jqd29gbhcnncj939")))) (build-system gnu-build-system) (native-inputs - `(("perl" ,perl) - ("perl-xml-dom" ,perl-xml-dom) ; for the tests - ("pkg-config" ,pkg-config))) + (list perl perl-xml-dom ; for the tests + pkg-config)) (inputs - `(("libgcrypt" ,libgcrypt) - ("libxml2" ,libxml2) - ("mpfr" ,mpfr) - ("pcre" ,pcre) - ("util-linux" ,util-linux "lib"))) + (list libgcrypt libxml2 mpfr pcre + `(,util-linux "lib"))) (propagated-inputs - `(("raptor2" ,raptor2))) ; stipulated by rasqal.pc + (list raptor2)) ; stipulated by rasqal.pc (arguments `(#:parallel-tests? #f ; test failure reported upstream, see @@ -253,12 +262,12 @@ Turtle/N3 and read them in SPARQL XML, RDF/XML and Turtle/N3.") "109n0kp39p966dpiasad2bb7q66rwbcb9avjvimw28chnpvlf66y")))) (build-system gnu-build-system) (native-inputs - `(("perl" ,perl) ; needed for installation - ("pkg-config" ,pkg-config))) + (list perl ; needed for installation + pkg-config)) (propagated-inputs - `(("rasqal" ,rasqal))) ; in Requires.private field of .pc + (list rasqal)) ; in Requires.private field of .pc (inputs - `(("bdb" ,bdb))) + (list bdb)) (home-page "http://librdf.org/") (synopsis "RDF library") (description "The Redland RDF Library (librdf) provides the RDF API @@ -323,11 +332,11 @@ ideal (e.g. in LV2 implementations or embedded applications).") (assoc-ref outputs "out") "/lib")) #t))))) (inputs - `(("pcre" ,pcre))) + (list pcre)) (native-inputs - `(("pkg-config" ,pkg-config))) + (list pkg-config)) (propagated-inputs - `(("serd" ,serd))) ; required by sord-0.pc + (list serd)) ; required by sord-0.pc (home-page "https://drobilla.net/software/sord/") (synopsis "C library for storing RDF data in memory") (description @@ -337,31 +346,35 @@ ideal (e.g. in LV2 implementations or embedded applications).") (define-public python-rdflib (package (name "python-rdflib") - (version "4.2.2") + (version "6.1.1") (source (origin (method url-fetch) (uri (pypi-uri "rdflib" version)) (sha256 (base32 - "0398c714znnhaa2x7v51b269hk20iz073knq2mvmqp2ma92z27fs")))) + "0m7pyq771vl4zf9xd3pxjbg7x6ac97b3djfbv9qq9fch56ps1gwd")))) (build-system python-build-system) (arguments - '(;; FIXME: Three test failures. Should be fixed next release. - #:tests? #f)) - ;; #:phases - ;; (modify-phases %standard-phases - ;; (replace 'check - ;; (lambda _ - ;; ;; Run tests from the build directory so python3 only - ;; ;; sees the installed 2to3 version. - ;; (invoke "nosetests" "--where=./build/src")))))) + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'adjust-tests + (lambda _ + (for-each delete-file + '(;; This test needs a font that is not shipped. + "test/test_so_69984830.py" + ;; These tests need internet access. + "test/jsonld/test_onedotone.py" + "test/test_sparql_service.py" + "test/test_graph.py")))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-vv" "test/"))))))) (native-inputs - `(("python-nose" ,python-nose))) + (list python-pytest)) (propagated-inputs - `(("python-html5lib" ,python-html5lib) - ("python-isodate" ,python-isodate) - ("python-pyparsing" ,python-pyparsing))) + (list python-html5lib python-isodate python-pyparsing)) (home-page "https://github.com/RDFLib/rdflib") (synopsis "Python RDF library") (description @@ -370,25 +383,42 @@ powerful language for representing information.") (license (license:non-copyleft "file://LICENSE" "See LICENSE in the distribution.")))) +(define-public python-rdflib-5 + (package + (inherit python-rdflib) + (version "5.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "rdflib" version)) + (sha256 + (base32 + "0mdi7xh4zcr3ngqwlgqdqf0i5bxghwfddyxdng1zwpiqkpa9s53q")))) + ;; XXX: Lazily disable tests because they require a lot of work + ;; and this package is only transitional. + (arguments '(#:tests? #f)))) + (define-public python2-rdflib - (package-with-python2 python-rdflib)) + (package-with-python2 python-rdflib-5)) +;; Note: This package is only needed for rdflib < 6.0; supersede when +;; the above are removed. (define-public python-rdflib-jsonld (package (name "python-rdflib-jsonld") - (version "0.5.0") + (version "0.6.2") (source (origin (method url-fetch) (uri (pypi-uri "rdflib-jsonld" version)) (sha256 (base32 - "1v85f4hdlrrk0l1najmqmm79ijrvcj259kwsrrxiq1q5chr5azag")))) + "0qrshlqzv5g5bign7kjja3xf7hyk7xgayr3yd0qlqda1kl0x6z0h")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (propagated-inputs - `(("python-rdflib" ,python-rdflib))) + (list python-rdflib)) (home-page "https://github.com/RDFLib/rdflib-jsonld") (synopsis "rdflib extension adding JSON-LD parser and serializer") (description "This package provides an rdflib extension adding JSON-LD @@ -408,7 +438,7 @@ parser and serializer.") "0x7yz0lvqb6mkhl5fbml27sppmscgpf8v2ism9jzzf0h982ffzxm")))) (build-system python-build-system) (propagated-inputs - `(("python-rdflib" ,python-rdflib))) + (list python-rdflib)) (home-page "https://github.com/hsolbrig/CFGraph") (synopsis "RDF Collections flattener for rdflib") (description @@ -430,13 +460,9 @@ parser and serializer.") "1vsq80jnix6cy78ayag7v8ajyw7h8dqyad1q6xkf2hzz3skvr34z")))) (build-system gnu-build-system) (inputs - `(("serd" ,serd) - ("zlib" ,zlib))) + (list serd zlib)) (native-inputs - `(("autoconf" ,autoconf) - ("automake" ,automake) - ("libtool" ,libtool) - ("pkg-config" ,pkg-config))) + (list autoconf automake libtool pkg-config)) (home-page "https://github.com/rdfhdt/hdt-cpp") (synopsis "C++ implementation of the HDT compression format") (description "Header Dictionary Triples (HDT) is a compression format for @@ -461,9 +487,10 @@ C++ library as well as various command-line tools to to work with HDT.") (arguments '(#:tests? #f)) ; The test suite simply queries external HTTP endpoints. (native-inputs - `(("python-nose" ,python-nose))) + ;; Build with setuptools <58 to get lib2to3 support. + (list python-nose python-setuptools)) (propagated-inputs - `(("python-rdflib" ,python-rdflib))) + (list python-rdflib)) (home-page "https://rdflib.dev/sparqlwrapper/") (synopsis "SPARQL Endpoint interface to Python") (description "Python wrapper around a SPARQL service. It helps in creating |