diff options
Diffstat (limited to 'gnu/packages/python-science.scm')
| -rw-r--r-- | gnu/packages/python-science.scm | 437 |
1 files changed, 210 insertions, 227 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index cc6a759e82..8df311baea 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -4,9 +4,9 @@ ;;; Copyright © 2016 Ben Woodcroft <[email protected]> ;;; Copyright © 2016 Hartmut Goebel <[email protected]> ;;; Copyright © 2016 Efraim Flashner <[email protected]> -;;; Copyright © 2016, 2017, 2018, 2019, 2020 Marius Bakke <[email protected]> +;;; Copyright © 2016-2020, 2022 Marius Bakke <[email protected]> ;;; Copyright © 2019 Tobias Geerinckx-Rice <[email protected]> -;;; Copyright © 2019 Maxim Cournoyer <[email protected]> +;;; Copyright © 2019, 2021 Maxim Cournoyer <[email protected]> ;;; Copyright © 2019 Giacomo Leidi <[email protected]> ;;; Copyright © 2020 Pierre Langlois <[email protected]> ;;; Copyright © 2020, 2021 Vinicius Monego <[email protected]> @@ -14,6 +14,7 @@ ;;; Copyright © 2021 Roel Janssen <[email protected]> ;;; Copyright © 2021 Paul Garlick <[email protected]> ;;; Copyright © 2021 Arun Isaac <[email protected]> +;;; Copyright © 2021 Felix Gruber <[email protected]> ;;; ;;; This file is part of GNU Guix. ;;; @@ -65,38 +66,39 @@ (define-public python-scipy (package (name "python-scipy") - (version "1.6.0") + (version "1.7.3") (source (origin (method url-fetch) (uri (pypi-uri "scipy" version)) (sha256 - (base32 "0rh5b1rwdcvvagld8vpxnpaibszy1skpx39a0fwzd5gx5pwcjvfb")))) + (base32 "1gxsnw6viz2j3sm8ak2a8l7fcn4b2zm3kzfm8w57xxyyrzx7an5b")))) (build-system python-build-system) (propagated-inputs - `(("python-numpy" ,python-numpy) - ("python-matplotlib" ,python-matplotlib) - ("python-pyparsing" ,python-pyparsing))) + (list python-numpy python-matplotlib python-pyparsing)) (inputs - `(("openblas" ,openblas) - ("pybind11" ,pybind11))) + (list openblas pybind11)) (native-inputs - `(("python-cython" ,python-cython) - ("python-pytest" ,python-pytest) - ("python-sphinx" ,python-sphinx) - ("python-numpydoc" ,python-numpydoc) - ("gfortran" ,gfortran) - ("perl" ,perl) - ("which" ,which))) + (list python-cython + python-pydata-sphinx-theme + python-pytest + python-sphinx + python-sphinx-panels + python-numpydoc + gfortran + perl + which)) (outputs '("out" "doc")) (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'disable-pythran + (lambda _ + (setenv "SCIPY_USE_PYTHRAN" "0"))) (add-before 'build 'change-home-dir (lambda _ ;; Change from /homeless-shelter to /tmp for write permission. - (setenv "HOME" "/tmp") - #t)) + (setenv "HOME" "/tmp"))) (add-after 'unpack 'disable-broken-tests (lambda _ (substitute* "scipy/sparse/linalg/dsolve/tests/test_linsolve.py" @@ -107,8 +109,7 @@ (substitute* "scipy/sparse/linalg/eigen/arpack/tests/test_arpack.py" (("^def test_parallel_threads\\(\\):" m) (string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n" - m))) - #t)) + m))))) (add-before 'build 'configure-openblas (lambda* (#:key inputs #:allow-other-keys) (call-with-output-file "site.cfg" @@ -126,8 +127,7 @@ atlas_libs = openblas " (assoc-ref inputs "openblas") (assoc-ref inputs "openblas") - (assoc-ref inputs "openblas")))) - #t)) + (assoc-ref inputs "openblas")))))) (add-after 'install 'install-doc (lambda* (#:key inputs outputs #:allow-other-keys) (let* ((data (string-append (assoc-ref outputs "doc") "/share")) @@ -153,17 +153,17 @@ atlas_libs = openblas (let* ((dir (dirname file)) (tgt-dir (string-append html "/" dir))) (install-file file html))) - (find-files "." ".*"))))) - #t)) + (find-files "."))))))) ;; Tests can only be run after the library has been installed and not ;; within the source directory. (delete 'check) (add-after 'install 'check - (lambda* (#:key inputs outputs #:allow-other-keys) - (add-installed-pythonpath inputs outputs) - (with-directory-excursion "/tmp" - (invoke "python" "-c" - "import scipy; scipy.test(verbose=2)"))))))) + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (with-directory-excursion "/tmp" + (invoke "python" "-c" + "import scipy; scipy.test(verbose=2)")))))))) (home-page "https://www.scipy.org/") (synopsis "The Scipy library provides efficient numerical routines") (description "The SciPy library is one of the core packages that make up @@ -184,7 +184,16 @@ routines such as routines for numerical integration and optimization.") (uri (pypi-uri "scipy" version)) (sha256 (base32 - "1cgvgin8fvckv96hjh3ikmwkra5rif51bdb75ifzf7xbil5iwcx4")))))) + "1cgvgin8fvckv96hjh3ikmwkra5rif51bdb75ifzf7xbil5iwcx4")))) + (native-inputs + (list python2-cython + python2-pytest + python2-sphinx + python2-numpydoc + gfortran-7 + gcc-7 + perl + which)))) (define-public python2-weave (package @@ -207,9 +216,9 @@ routines such as routines for numerical integration and optimization.") "--exclude" "test_(user|incorrect_ownership|char_fail|obj_fail)")))))) (propagated-inputs - `(("python-numpy" ,python2-numpy))) + (list python2-numpy)) (native-inputs - `(("python-nose" ,python2-nose))) + (list python2-nose)) (home-page "https://www.scipy.org/") (synopsis "Tools for including C/C++ code within Python code") (description "Weave is the stand-alone version of the obsolete Scipy @@ -230,19 +239,11 @@ Cython.") (sha256 (base32 "0bp1n771fj44kdp7a00bcvfwirvv2rc803b7g6yf3va7v0j29c8s")))) (build-system python-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda _ - (invoke "nosetests" "-s" "-v" "skfuzzy") - #t))))) + (arguments '(#:tests? #f)) ;XXX: not compatible with newer numpy.testing (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (propagated-inputs - `(("python-networkx" ,python-networkx) - ("python-numpy" ,python-numpy) - ("python-scipy" ,python-scipy))) + (list python-networkx python-numpy python-scipy)) (home-page "https://github.com/scikit-fuzzy/scikit-fuzzy") (synopsis "Fuzzy logic toolkit for SciPy") (description @@ -282,24 +283,24 @@ logic, also known as grey logic.") ;; NOTE: scikit-image has an optional dependency on python-pooch, however ;; propagating it would enable many more tests that require online data. (propagated-inputs - `(("python-cloudpickle" ,python-cloudpickle) - ("python-dask" ,python-dask) - ("python-imageio" ,python-imageio) - ("python-matplotlib" ,python-matplotlib) - ("python-networkx" ,python-networkx) - ("python-numpy" ,python-numpy) - ("python-pillow" ,python-pillow) - ("python-pywavelets" ,python-pywavelets) - ("python-scipy" ,python-scipy) - ("python-tifffile" ,python-tifffile))) + (list python-cloudpickle + python-dask + python-imageio + python-matplotlib + python-networkx + python-numpy + python-pillow + python-pywavelets + python-scipy + python-tifffile)) (native-inputs - `(("python-codecov" ,python-codecov) - ("python-cython" ,python-cython) - ("python-flake8" ,python-flake8) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-localserver" ,python-pytest-localserver) - ("python-wheel" ,python-wheel))) + (list python-codecov + python-cython + python-flake8 + python-pytest + python-pytest-cov + python-pytest-localserver + python-wheel)) (home-page "https://scikit-image.org/") (synopsis "Image processing in Python") (description @@ -318,7 +319,7 @@ logic, also known as grey logic.") (base32 "0dncp9i5b6afkg7f8mj9j0qzsp008b8v73yc0qkmizhpns7mvwvx")))) (build-system python-build-system) (propagated-inputs - `(("python-numpy" ,python-numpy))) + (list python-numpy)) (home-page "https://github.com/brandon-rhodes/python-sgp4") (synopsis "Track earth satellite TLE orbits using SGP4") (description @@ -329,13 +330,13 @@ of the SGP4 satellite tracking algorithm.") (define-public python-pandas (package (name "python-pandas") - (version "1.3.0") + (version "1.3.5") (source (origin (method url-fetch) (uri (pypi-uri "pandas" version)) (sha256 - (base32 "1qi2cv450m05dwccx3p1s373k5b4ncvwi74plnms2pidrz4ycm65")))) + (base32 "1wd92ra8xcjgigbypid53gvby89myg68ica6r8hdw4hhvvsqahhy")))) (build-system python-build-system) (arguments `(#:modules ((guix build utils) @@ -358,47 +359,48 @@ of the SGP4 satellite tracking algorithm.") ;; xsel needs to write a log file. (setenv "HOME" "/tmp"))) (replace 'check - (lambda _ + (lambda* (#:key tests? #:allow-other-keys) (let ((build-directory (string-append (getcwd) "/build/" (first (scandir "build" (cut string-prefix? "lib." <>)))))) + (substitute* "pyproject.toml" + ;; Not all data files are distributed with the tarball. + (("--strict-data-files ") "")) (with-directory-excursion build-directory - (invoke "pytest" "-vv" "pandas" "--skip-slow" - "--skip-network" - "-k" - ;; These tets access the internet: - ;; pandas/tests/io/xml/test_xml.py::test_wrong_url[lxml] - ;; pandas/tests/io/xml/test_xml.py::test_wrong_url[etree] - ;; TODO: the excel tests fail for unknown reasons - (string-append "not test_wrong_url" - " and not test_excelwriter_fspath" - " and not test_ExcelWriter_dispatch" - ;; TODO: Missing input - " and not TestS3" - " and not s3"))))))))) + (when tests? + (invoke "pytest" "-vv" "pandas" "--skip-slow" + "--skip-network" + "-k" + (string-append + ;; These test access the internet (see: + ;; https://github.com/pandas-dev/pandas/issues/45085).: + ;; pandas/tests/io/xml/test_xml.py::test_wrong_url[lxml] + ;; pandas/tests/io/xml/test_xml.py::test_wrong_url[etree] + "not test_wrong_url" + ;; TODO: Missing input + " and not TestS3" + " and not s3")))))))))) (propagated-inputs - `(("python-jinja2" ,python-jinja2) - ("python-numpy" ,python-numpy) - ("python-openpyxl" ,python-openpyxl) - ("python-pytz" ,python-pytz) - ("python-dateutil" ,python-dateutil) - ("python-xlrd" ,python-xlrd))) + (list python-jinja2 + python-numpy + python-openpyxl + python-pytz + python-dateutil + python-xlrd + python-xlsxwriter)) (inputs - `(("which" ,which) - ("xclip" ,xclip) - ("xsel" ,xsel))) + (list which xclip xsel)) (native-inputs - `(("python-cython" ,python-cython) - ("python-beautifulsoup4" ,python-beautifulsoup4) - ("python-lxml" ,python-lxml) - ("python-html5lib" ,python-html5lib) - ("python-nose" ,python-nose) - ("python-pytest" ,python-pytest) - ("python-pytest-mock" ,python-pytest-mock) - ;; Needed to test clipboard support. - ("xorg-server" ,xorg-server-for-tests))) + (list python-cython + python-beautifulsoup4 + python-lxml + python-html5lib + python-pytest + python-pytest-mock + ;; Needed to test clipboard support. + xorg-server-for-tests)) (home-page "https://pandas.pydata.org") (synopsis "Data structures for data analysis, time series, and statistics") (description @@ -410,33 +412,10 @@ doing practical, real world data analysis in Python.") (properties `((python2-variant . ,(delay python2-pandas)))) (license license:bsd-3))) -(define-public python-pandas-0.25 - (package - (inherit python-pandas) - (version "0.25.3") - (source (origin - (method url-fetch) - (uri (pypi-uri "pandas" version)) - (sha256 - (base32 - "191048m6kdc6yfvqs9w412lq60cfvigrsb57y0x116lwibgp9njj")))) - (arguments - (substitute-keyword-arguments (package-arguments python-pandas) - ((#:phases phases) - `(modify-phases ,phases - (replace 'patch-which - (lambda* (#:key inputs #:allow-other-keys) - (let ((which (assoc-ref inputs "which"))) - (substitute* "pandas/io/clipboard/__init__.py" - (("^CHECK_CMD = .*") - (string-append "CHECK_CMD = \"" which "\"\n")))) - #t)) - (delete 'prepare-x))))))) - ;; Pandas 0.24.x are the last versions that support Python 2. (define-public python2-pandas (let ((pandas (package-with-python2 - (strip-python2-variant python-pandas-0.25)))) + (strip-python2-variant python-pandas)))) (package (inherit pandas) (version "0.24.2") @@ -493,25 +472,22 @@ doing practical, real world data analysis in Python.") ;; XXX: Due to the deleted tests above. "not test_read_s3_jsonl")))))))) (propagated-inputs - `(("python-numpy" ,python2-numpy) - ("python-openpyxl" ,python2-openpyxl) - ("python-pytz" ,python2-pytz) - ("python-dateutil" ,python2-dateutil) - ("python-xlrd" ,python2-xlrd))) + (list python2-numpy python2-openpyxl python2-pytz python2-dateutil + python2-xlrd)) (inputs - `(("which" ,which))) + (list which)) (native-inputs - `(("python-cython" ,python2-cython) - ("python-beautifulsoup4" ,python2-beautifulsoup4) - ("python-lxml" ,python2-lxml) - ("python-html5lib" ,python2-html5lib) - ("python-nose" ,python2-nose) - ("python-pytest" ,python2-pytest) - ("python-pytest-mock" ,python2-pytest-mock)))))) + (list python2-cython + python2-beautifulsoup4 + python2-lxml + python2-html5lib + python2-nose + python2-pytest + python2-pytest-mock))))) -(define-public python-pyflow +(define-public python2-pyflow (package - (name "python-pyflow") + (name "python2-pyflow") (version "1.1.20") (source (origin (method url-fetch) @@ -523,7 +499,10 @@ doing practical, real world data analysis in Python.") "1bvfvviw58cndyn862qnv9nj3d9cd3a0dm4vc4sd9vwq8a6z1riv")))) (build-system python-build-system) (arguments - `(#:tests? #f)) ; There is no test suite. + `(#:tests? #f ; There is no test suite. + ;; There is no official Python 3-compatible version and upstream is + ;; dead. See https://github.com/Illumina/pyflow/issues/20. + #:python ,python-2)) (home-page "https://illumina.github.io/pyflow/") (synopsis "Tool to manage tasks in a task dependency graph") (description "This package is a Python module to manage tasks in the @@ -548,11 +527,9 @@ context of a task dependency graph. It has some similarities to make.") (lambda _ (invoke "python" "setup.py" "pytest")))))) (native-inputs - `(("python-hypothesis" ,python-hypothesis) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-hypothesis python-pytest python-pytest-runner)) (propagated-inputs - `(("python-numpy" ,python-numpy))) + (list python-numpy)) (home-page "https://github.com/pydata/bottleneck") (synopsis "Fast NumPy array functions written in C") (description @@ -572,9 +549,7 @@ written in C.") (base32 "1c1354a7b3g8slychjgyjxqdm8z40z9kviyl9n4g9kfpdg0p4d64")))) (build-system python-build-system) (propagated-inputs - `(("python-matplotlib" ,python-matplotlib) - ("python-numpy" ,python-numpy) - ("python-scipy" ,python-scipy))) + (list python-matplotlib python-numpy python-scipy)) (home-page "https://github.com/janezd/baycomp") (synopsis "Library for comparison of Bayesian classifiers") (description @@ -598,11 +573,9 @@ higher scores.") "1yx8j66b7rn10m2l6gmn8yr9cn38pi5cj0x0wwpy4hdnhy6i7qv4")))) (build-system python-build-system) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm) - ("python-pytest" ,python-pytest))) + (list python-setuptools-scm python-pytest)) (propagated-inputs - `(("python-numpy" ,python-numpy) - ("python-pandas" ,python-pandas))) + (list python-numpy python-pandas)) (arguments `(#:phases (modify-phases %standard-phases @@ -634,8 +607,7 @@ and visualization with these data structures.") "0syzy645mwcy7lfjwz6pc8f9p2vv1qk4limc8iina3l5nnf0rjyz")))) (build-system python-build-system) (propagated-inputs - `(("python-msgpack" ,python-msgpack) - ("python-numpy" ,python-numpy))) + (list python-msgpack python-numpy)) (home-page "https://github.com/lebedov/msgpack-numpy") (synopsis "Numpy data serialization using msgpack") @@ -669,7 +641,7 @@ Python's native complex data types is also supported.") (with-directory-excursion "ruffus/test" (invoke "bash" "run_all_unit_tests3.cmd")))))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "http://www.ruffus.org.uk") (synopsis "Light-weight computational pipeline management") (description @@ -690,11 +662,8 @@ automated with the minimum of fuss and the least effort.") "1f8c2sylzr7lpjbyqxsqlp9xi8rj3d8c9hfh98x4jbb83zxc4026")))) (build-system python-build-system) (propagated-inputs - `(("python-numpy" ,python-numpy) - ("python-seaborn" ,python-seaborn) - ("python-matplotlib" ,python-matplotlib) - ("python-pandas" ,python-pandas) - ("python-scipy" ,python-scipy))) + (list python-numpy python-seaborn python-matplotlib python-pandas + python-scipy)) (home-page "https://github.com/webermarcolivier/statannot") (synopsis "Add annotations to existing plots generated by seaborn") @@ -706,32 +675,35 @@ annotations on an existing boxplots and barplots generated by seaborn.") (define-public python-upsetplot (package (name "python-upsetplot") - (version "0.4.1") + (version "0.6.0") (source (origin (method url-fetch) (uri (pypi-uri "UpSetPlot" version)) (sha256 (base32 - "0kwljcmsvrxm33y3ssham2bwv4a5m31mv96y9h18va0cv7s3mqn1")))) + "11zrykwnb00w5spx4mnsnm0f9gwrphdczainpmwkyyi50vipaa2l")) + (modules '((guix build utils))) + (snippet + ;; Patch for compatibility with newer setuptools: + ;; https://github.com/jnothman/UpSetPlot/pull/178 + '(substitute* "upsetplot/data.py" + (("import distutils") + "from distutils.version import LooseVersion") + (("if distutils\\.version\\.LooseVersion") + "if LooseVersion"))))) (build-system python-build-system) (arguments - `(#:phases + '(#:phases (modify-phases %standard-phases - (add-after 'unpack 'fix-versioning - (lambda _ - (substitute* "setup.py" - (("pytest-cov<2.6") "pytest-cov")))) (replace 'check - (lambda* (#:key inputs outputs #:allow-other-keys) - (add-installed-pythonpath inputs outputs) - (invoke "pytest" "-v" "--doctest-modules")))))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-v" "--doctest-modules"))))))) (propagated-inputs - `(("python-matplotlib" ,python-matplotlib) - ("python-pandas" ,python-pandas))) + (list python-matplotlib python-pandas)) (native-inputs - `(("python-pytest-runner" ,python-pytest-runner) - ("python-pytest-cov" ,python-pytest-cov))) + (list python-pytest-runner python-pytest-cov)) (home-page "https://upsetplot.readthedocs.io") (synopsis "Draw UpSet plots with Pandas and Matplotlib") (description @@ -775,7 +747,7 @@ readable.") ("pkgconfig" ,python-pkgconfig) ("matplotlib" ,python-matplotlib))) (native-inputs ; for python-pkgconfig - `(("pkg-config" ,pkg-config))) + (list pkg-config)) (propagated-inputs `(("numpy" ,python-numpy) ("vtk" ,vtk))) @@ -811,8 +783,7 @@ dependencies.") "12g4av8gpl6l83yza3h97j3f2jblqv69frlidrvdq8ny2rc6awbq")))) (build-system python-build-system) (propagated-inputs - `(("python-pandas" ,python-pandas) - ("python-xarray" ,python-xarray))) + (list python-pandas python-xarray)) (home-page "https://github.com/Zsailer/pandas_flavor") (synopsis "Write your own flavor of Pandas") (description "Pandas 0.23 added a simple API for registering accessors @@ -828,7 +799,7 @@ of Pandas (define-public python-pingouin (package (name "python-pingouin") - (version "0.3.12") + (version "0.5.0") (source ;; The PyPI tarball does not contain the tests. (origin @@ -839,7 +810,7 @@ of Pandas (file-name (git-file-name name version)) (sha256 (base32 - "1ap29x54kdr19vi8qxj9g6cz2r1q4f0z7dcf6g77zwav7hf7r61a")))) + "01aaq023q4bymffrc2wm56af87da32wcvy5d5156i4g7qgvh346r")))) (build-system python-build-system) (arguments `(#:phases @@ -859,19 +830,18 @@ of Pandas (when tests? (invoke "pytest"))))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov))) + (list python-pytest python-pytest-cov)) (propagated-inputs - `(("python-matplotlib" ,python-matplotlib) - ("python-mpmath" ,python-mpmath) - ("python-numpy" ,python-numpy) - ("python-pandas" ,python-pandas) - ("python-pandas-flavor" ,python-pandas-flavor) - ("python-scikit-learn" ,python-scikit-learn) - ("python-scipy" ,python-scipy) - ("python-seaborn" ,python-seaborn) - ("python-statsmodels" ,python-statsmodels) - ("python-tabulate" ,python-tabulate))) + (list python-matplotlib + python-mpmath + python-numpy + python-pandas + python-pandas-flavor + python-scikit-learn + python-scipy + python-seaborn + python-statsmodels + python-tabulate)) (home-page "https://pingouin-stats.org/") (synopsis "Statistical package for Python") (description "Pingouin is a statistical package written in Python 3 and @@ -899,7 +869,7 @@ and more (define-public python-distributed (package (name "python-distributed") - (version "2021.07.1") + (version "2021.11.2") (source (origin ;; The test files are not included in the archive on pypi @@ -910,11 +880,16 @@ and more (file-name (git-file-name name version)) (sha256 (base32 - "0i55zf3k55sqjxnwlzsyj3h3v1588fn54ng4mj3dfiqzh3nlj0dg")))) + "1p20cbyabzl7rs8y3ydzszsskh4kw088m252ghgairhs0p2f95hl")) + ;; Delete bundled copy of python-versioneer. + (snippet '(delete-file "versioneer.py")))) (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases + (add-after 'unpack 'versioneer + (lambda _ + (invoke "versioneer" "install"))) (add-after 'unpack 'fix-references (lambda* (#:key outputs #:allow-other-keys) (substitute* '("distributed/comm/tests/test_ucx_config.py" @@ -939,29 +914,31 @@ and more "-m" "not slow and not gpu and not ipython and not avoid_ci" "-k" ;; TODO: These tests fail for unknown reasons: - ;; Assertion error. (string-append - "not test_version_option" + ;; TimeoutExpired + "not test_text" + ;; AssertionError + " and not test_version_option" ;; "The 'distributed' distribution was not found" " and not test_register_backend_entrypoint" ;; "AttributeError: module 'distributed.dashboard' has no attribute 'scheduler'" " and not test_get_client_functions_spawn_clusters")))))))) (propagated-inputs - `(("python-click" ,python-click) - ("python-cloudpickle" ,python-cloudpickle) - ("python-cryptography" ,python-cryptography) - ("python-dask" ,python-dask) - ("python-msgpack" ,python-msgpack) - ("python-psutil" ,python-psutil) - ("python-pyyaml" ,python-pyyaml) - ("python-setuptools" ,python-setuptools) - ("python-sortedcontainers" ,python-sortedcontainers) - ("python-tblib" ,python-tblib) - ("python-toolz" ,python-toolz) - ("python-tornado" ,python-tornado-6) - ("python-zict" ,python-zict))) + (list python-click + python-cloudpickle + python-cryptography + python-dask + python-msgpack + python-psutil + python-pyyaml + python-setuptools + python-sortedcontainers + python-tblib + python-toolz + python-tornado-6 + python-zict)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest python-versioneer)) (home-page "https://distributed.dask.org") (synopsis "Distributed scheduler for Dask") (description "Dask.distributed is a lightweight library for distributed @@ -991,6 +968,12 @@ computing in Python. It extends both the @code{concurrent.futures} and (add-after 'unpack 'make-files-writable (lambda _ (for-each make-file-writable (find-files ".")))) + (add-after 'unpack 'loosen-requirements + (lambda _ + (substitute* "setup.py" + ;; Don't depend on a specific version of Pandas. + (("pandas==") + "pandas>=")))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? @@ -1001,31 +984,31 @@ computing in Python. It extends both the @code{concurrent.futures} and (invoke "python" "-m" "pytest" "modin/pandas/test/test_concat.py"))))))) (propagated-inputs - `(("python-cloudpickle" ,python-cloudpickle) - ("python-dask" ,python-dask) - ("python-distributed" ,python-distributed) - ("python-numpy" ,python-numpy) - ("python-packaging" ,python-packaging) - ("python-pandas" ,python-pandas))) + (list python-cloudpickle + python-dask + python-distributed + python-numpy + python-packaging + python-pandas)) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-jinja2" ,python-jinja2) - ("python-lxml" ,python-lxml) - ("python-matplotlib" ,python-matplotlib) - ("python-msgpack" ,python-msgpack) - ("python-openpyxl" ,python-openpyxl) - ("python-psutil" ,python-psutil) - ("python-pyarrow" ,python-pyarrow) - ("python-pytest" ,python-pytest) - ("python-pytest-benchmark" ,python-pytest-benchmark) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-xdist" ,python-pytest-xdist) - ("python-scipy" ,python-scipy) - ("python-sqlalchemy" ,python-sqlalchemy) - ("python-tables" ,python-tables) - ("python-tqdm" ,python-tqdm) - ("python-xarray" ,python-xarray) - ("python-xlrd" ,python-xlrd))) + (list python-coverage + python-jinja2 + python-lxml + python-matplotlib + python-msgpack + python-openpyxl + python-psutil + python-pyarrow + python-pytest + python-pytest-benchmark + python-pytest-cov + python-pytest-xdist + python-scipy + python-sqlalchemy + python-tables + python-tqdm + python-xarray + python-xlrd)) (home-page "https://github.com/modin-project/modin") (synopsis "Make your pandas code run faster") (description |