diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 87 |
1 files changed, 67 insertions, 20 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e161088613..de31f44dbd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3257,6 +3257,29 @@ design tools, including ALM, ALC, and expected improvement for optimizing noisy black-box functions.") (license license:lgpl2.0+))) +(define-public r-tgstat + (package + (name "r-tgstat") + (version "2.3.24") + (source + (origin + (method url-fetch) + (uri (cran-uri "tgstat" version)) + (sha256 + (base32 "0czd3j7z30jgb03813s0jc0701ypnwpkkq7var6n6f6cj7sdvc0l")))) + (properties `((upstream-name . "tgstat"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=tgstat") + (synopsis "Amos Tanay's Group High Performance Statistical Utilities") + (description + "This package provides a collection of high-performance utilities. +It can be used to compute distances, correlations, autocorrelations, +clustering, and other tasks. It also contains a graph clustering +algorithm described in MetaCell analysis of single-cell RNA-seq +data using K-nn graph partitions.") + (license license:gpl2))) + (define-public r-tidyft (package (name "r-tidyft") @@ -3948,13 +3971,13 @@ a list of p-values.") (define-public r-htmltools (package (name "r-htmltools") - (version "0.5.6") + (version "0.5.6.1") (source (origin (method url-fetch) (uri (cran-uri "htmltools" version)) (sha256 (base32 - "0rx0nmal1dca5xqj1pd17a85whsislhkyxxa4scmxgn38lkqxsqm")))) + "0km08kvg0j2h1d0v6wpxf09yjadhp2srjjnmqwcahfyh37w4xf09")))) (build-system r-build-system) (propagated-inputs (list r-base64enc r-digest r-ellipsis r-fastmap r-rlang)) @@ -7400,14 +7423,14 @@ median test.") (define-public r-ksamples (package (name "r-ksamples") - (version "1.2-9") + (version "1.2-10") (source (origin (method url-fetch) (uri (cran-uri "kSamples" version)) (sha256 (base32 - "1zs22p68d6320kcylisnk0b5wmpapxkyz15py09czxzw7npw8gms")))) + "13ap5ggid3w3s3k5mzz1ir31j96hjg6msa2s1hcy66zv242wqrid")))) (properties `((upstream-name . "kSamples"))) (build-system r-build-system) (propagated-inputs @@ -10382,13 +10405,13 @@ multivariate distributions.") (define-public r-fbasics (package (name "r-fbasics") - (version "4022.94") + (version "4031.95") (source (origin (method url-fetch) (uri (cran-uri "fBasics" version)) (sha256 (base32 - "1mka9avcdkq4sj40xa15hrjm1f8ppzbvw3yzxbhkbaw9c130qfy8")))) + "1d1pbyidng68fcc6vrm98ybklz6yzrinqc2dhg8q6f1pg3kkx6bj")))) (properties `((upstream-name . "fBasics"))) (build-system r-build-system) (propagated-inputs @@ -10602,6 +10625,29 @@ the Singular Value Decomposition in R (Beaton et al 2014) the matrix exponential and logarithm, and the determinant.") (license license:gpl2))) +(define-public r-complexupset + (package + (name "r-complexupset") + (version "1.3.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "ComplexUpset" version)) + (sha256 + (base32 "1sk4v5kc2wkgfaws0hjlp30mngm907r5gz1iglf68j46lfs9jbsv")))) + (properties `((upstream-name . "ComplexUpset"))) + (build-system r-build-system) + (propagated-inputs (list r-colorspace r-ggplot2 r-patchwork r-scales)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/krassowski/complex-upset") + (synopsis "Create complex UpSet plots using ggplot2 components") + (description + "@code{UpSet} plots are an improvement over Venn Diagram for set overlap +visualizations. Striving to bring the best of the @code{UpSetR} and ggplot2, +this package offers a way to create complex overlap visualisations, using +simple and familiar tools.") + (license license:expat))) + (define-public r-phontools (package (name "r-phontools") @@ -10719,14 +10765,14 @@ powerful and convenient features.") (define-public r-heatmaply (package (name "r-heatmaply") - (version "1.4.2") + (version "1.5.0") (source (origin (method url-fetch) (uri (cran-uri "heatmaply" version)) (sha256 (base32 - "0zgaqmbc1nha38c8kx5xdjdjbwmykrf2acq8ydki8dqixv6b34la")))) + "1crdm7avxv3zx59byz2fqbcw95728crwf9cckjb9gal1065xv95c")))) (build-system r-build-system) (propagated-inputs (list r-assertthat @@ -12820,14 +12866,14 @@ steps and provides ggplot2-based elegant data visualization.") (define-public r-fansi (package (name "r-fansi") - (version "1.0.4") + (version "1.0.5") (source (origin (method url-fetch) (uri (cran-uri "fansi" version)) (sha256 (base32 - "17y4m4yy8d6j6rlql2bpigcyn6yfv2g2aaaj96xjp4j0di722qri")))) + "1xi35schbz42kjwjzhjqj12nd053962mgnk6qd9k5m5zgwsww5n6")))) (build-system r-build-system) (native-inputs (list r-knitr)) ; for vignettes @@ -16126,19 +16172,20 @@ models.") (define-public r-glmmtmb (package (name "r-glmmtmb") - (version "1.1.7") + (version "1.1.8") (source (origin (method url-fetch) (uri (cran-uri "glmmTMB" version)) (sha256 (base32 - "1wf1fn2gf500y2r4d84p5gj3b1fj2cmyw2lp366r4nm6p3iyd2x3")))) + "055xi424cd1glhbv8a8v9cm79zq9skb7230nq0xm90iggb1zcj22")))) (properties `((upstream-name . "glmmTMB"))) (build-system r-build-system) (propagated-inputs (list r-lme4 r-matrix + r-mgcv r-nlme r-numderiv r-rcppeigen @@ -18065,13 +18112,13 @@ pairs (Selesnick 2001, 2002).") (define-public r-word2vec (package (name "r-word2vec") - (version "0.3.4") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "word2vec" version)) (sha256 (base32 - "0qj39vms6zgwb8lpmfkppayizdmhakic3pkacglary3ain61vnsk")))) + "14ba0cj430d02bd6fay3nl4ldwqyj77iwjm4gzgdc0f6sx597iiq")))) (properties `((upstream-name . "word2vec"))) (build-system r-build-system) (propagated-inputs (list r-rcpp r-rcppprogress)) @@ -18907,14 +18954,14 @@ PostScript pictures in R plots.") (define-public r-grimport2 (package (name "r-grimport2") - (version "0.2-0") + (version "0.3-0") (source (origin (method url-fetch) (uri (cran-uri "grImport2" version)) (sha256 (base32 - "19q0dd8fpp1g4xf6sg5f8dxybwxjfw553ra6wgjd8b74fzca40m1")))) + "04k71x2wm1wsgv5fnk8xip2q5brl9cnjp3fv2rs0kdq9jkhs6yhz")))) (properties `((upstream-name . "grImport2"))) (build-system r-build-system) (propagated-inputs @@ -25197,13 +25244,13 @@ includes data sets from oceanography.") (define-public r-plotroc (package (name "r-plotroc") - (version "2.3.0") + (version "2.3.1") (source (origin (method url-fetch) (uri (cran-uri "plotROC" version)) (sha256 (base32 - "0kaz9hrimi9gi7cf7flag9kc9yrg5fdyylqa5hn53x4dy8vhj37g")) + "15jvn1dlx8qh5ghnkhqyc49frw6rp58ikpjs3ga8mjxrqyz7wb1g")) (snippet '(delete-file "inst/d3.v3.min.js")))) (properties `((upstream-name . "plotROC"))) @@ -29810,14 +29857,14 @@ automatically show a loader when the output is (re)calculating.") (define-public r-rsvg (package (name "r-rsvg") - (version "2.5.0") + (version "2.6.0") (source (origin (method url-fetch) (uri (cran-uri "rsvg" version)) (sha256 (base32 - "1gi31hhs488a90lcql9c1hhsbymskj5brp05ag5z9f0azspazpdm")))) + "0w29isj7n33vwacvk5h6ghgm9j3phghnz7a98b1xi60cyk08qi2b")))) (properties `((upstream-name . "rsvg"))) (build-system r-build-system) (inputs |