diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 24 |
1 files changed, 12 insertions, 12 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2fbfdba2d8..a49c05dbce 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1958,14 +1958,14 @@ experiments.") (define-public r-genomicinteractions (package (name "r-genomicinteractions") - (version "1.20.2") + (version "1.20.3") (source (origin (method url-fetch) (uri (bioconductor-uri "GenomicInteractions" version)) (sha256 (base32 - "0mqb899wah5n7bp2lajhwy2zpqqhi18plza3i3m51rfl9n62smph")))) + "01ps97cs29qvzy5piq2l2k0yyr56rmg5cycfiqhbbvqpjrfvy60g")))) (properties `((upstream-name . "GenomicInteractions"))) (build-system r-build-system) @@ -3332,14 +3332,14 @@ peak definition in combination with known profile characteristics.") (define-public r-varianttools (package (name "r-varianttools") - (version "1.28.0") + (version "1.28.1") (source (origin (method url-fetch) (uri (bioconductor-uri "VariantTools" version)) (sha256 (base32 - "0aafcprsqbn1xl8jqnxfl8r2d0lmzhssqpr26lam2cprh3yk0xiv")))) + "1x57shc3slcbnc807ra1nwnjr37sqjh04n2xfwd469m4hkjb0jzh")))) (properties `((upstream-name . "VariantTools"))) (build-system r-build-system) (propagated-inputs @@ -3501,8 +3501,8 @@ phenotype of interest.") (synopsis "Fast gene set enrichment analysis") (description "The package implements an algorithm for fast gene set enrichment -analysis. Using the fast algorithm allows to make more permutations and get -more fine grained p-values, which allows to use accurate stantard approaches +analysis. Using the fast algorithm makes more permutations and gets +more fine grained p-values, which allows using accurate standard approaches to multiple hypothesis correction.") (license license:expat))) @@ -3783,14 +3783,14 @@ provides reporting features.") (define-public r-a4base (package (name "r-a4base") - (version "1.34.0") + (version "1.34.1") (source (origin (method url-fetch) (uri (bioconductor-uri "a4Base" version)) (sha256 (base32 - "0dgqyq4dnlcik5qqygnhxlhfr98sh6kmdcj2qllhrwyk0lmsfk01")))) + "1a0yk05ikk1hr1vpxynydrb5xb1hj4hdqlh9zd13n83ir89dss83")))) (properties `((upstream-name . "a4Base"))) (build-system r-build-system) (propagated-inputs @@ -4032,14 +4032,14 @@ position-specific scores within R and Bioconductor.") (define-public r-atacseqqc (package (name "r-atacseqqc") - (version "1.10.3") + (version "1.10.4") (source (origin (method url-fetch) (uri (bioconductor-uri "ATACseqQC" version)) (sha256 (base32 - "18zf90iksglbs13cwr4jjwsv332a19lf4bpdmy69jz8bpwrklv22")))) + "1g07ni134cyl3jd9y19afip39kxddfgpm1jjm0rhrm7jgssp24in")))) (properties `((upstream-name . "ATACseqQC"))) (build-system r-build-system) (propagated-inputs @@ -4271,7 +4271,7 @@ investigation using RNA-seq data.") (home-page "https://bioconductor.org/packages/AUCell/") (synopsis "Analysis of gene set activity in single-cell RNA-seq data") (description - "AUCell allows to identify cells with active gene sets (e.g. signatures, + "AUCell identifies cells with active gene sets (e.g. signatures, gene modules, etc) in single-cell RNA-seq data. AUCell uses the @dfn{Area Under the Curve} (AUC) to calculate whether a critical subset of the input gene set is enriched within the expressed genes for each cell. The @@ -6426,7 +6426,7 @@ parametric mixture model. The protein binding sites (clusters) are then resolved at high resolution and cluster statistics are estimated using a rigorous Bayesian framework. Post-processing of the results, data export for UCSC genome browser visualization and motif search analysis are provided. In -addition, the package allows to integrate RNA-Seq data to estimate the False +addition, the package integrates RNA-Seq data to estimate the False Discovery Rate of cluster detection. Key functions support parallel multicore computing. While wavClusteR was designed for PAR-CLIP data analysis, it can be applied to the analysis of other NGS data obtained from experimental |