diff options
Diffstat (limited to 'gnu/packages/astronomy.scm')
| -rw-r--r-- | gnu/packages/astronomy.scm | 609 |
1 files changed, 446 insertions, 163 deletions
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index b7b057e026..d7747f051d 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -188,7 +188,7 @@ reused in several astronomical applications, such as @code{wsclean}, (define-public calceph (package (name "calceph") - (version "3.5.4") + (version "3.5.5") (source (origin (method url-fetch) @@ -196,7 +196,7 @@ reused in several astronomical applications, such as @code{wsclean}, "https://www.imcce.fr/content/medias/recherche/equipes/asd/calceph/calceph-" version ".tar.gz")) (sha256 - (base32 "1d95k62926p6h43qh9pxbpa5wm8rby5la9pqq3k6sdyg4gl39a69")))) + (base32 "1jiaqyir2qcxzjlhk7f9fhrf6snjsiwxznvzdl996xr6m4lzbb7p")))) (build-system gnu-build-system) (native-inputs (list gfortran)) @@ -505,6 +505,13 @@ in FITS files.") (sha256 (base32 "0ph9jhv4q4i4z6nkqr6hjw9148kdlnayxsn83qgv5dqn0h3nc9r8")))) (build-system pyproject-build-system) + (arguments + (list + ;; FIXME: https://github.com/aplpy/aplpy/issues/492 + #:tests? #f + #:phases + #~(modify-phases %standard-phases + (delete 'sanity-check)))) (propagated-inputs (list python-astropy python-matplotlib @@ -562,7 +569,13 @@ Main features: (arguments (list #:test-flags - '(list "--ignore-glob=examples/*") + '(list "--ignore-glob=examples/*" + ;; Disable tests which are not compatible with Astropy 6.0.0, see + ;; <https://github.com/astroML/astroML/issues/273>. + "--ignore=astroML/density_estimation/tests/test_bayesian_blocks.py" + "--ignore=astroML/density_estimation/tests/test_bayesian_blocks.py" + "--ignore=astroML/density_estimation/tests/test_hist_binwidth.py" + "--ignore=astroML/density_estimation/tests/test_hist_binwidth.py") #:phases '(modify-phases %standard-phases (add-after 'unpack 'patch-build-system @@ -693,6 +706,63 @@ CFITSIO library. Among other things, it can series in Python.") (license license:bsd-2))) +(define-public python-ginga + (package + (name "python-ginga") + (version "4.1.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ginga" version)) + (sha256 + (base32 "0w60w9d2yqhbmggp0dljj5a0sk07gywifjq8nzw3y2v47vzgwqb6")))) + (build-system pyproject-build-system) + (propagated-inputs + (list ;;python-exifread ; optional, not packed yet in Guix + python-astropy + python-astroquery + python-dateutil + python-magic + python-matplotlib + python-fitsio + python-numpy + python-photutils + python-pillow + python-qtpy + python-scipy)) + (native-inputs + (list python-attrs + python-docutils + python-pytest-astropy + python-semantic-version + python-tornado)) + (home-page "https://ejeschke.github.io/ginga/") + (synopsis "Scientific image viewer and toolkit for FITS files") + (description "Ginga is a toolkit designed for building viewers for +scientific image data in Python, visualizing 2D pixel data in numpy arrays. It +can view astronomical data such as contained in files based on the +FITS (Flexible Image Transport System) file format. It is written and is +maintained by software engineers at the National Astronomical Observatory of +Japan (NAOJ), the Space Telescope Science Institute (STScI), and other +contributing entities. + +The Ginga toolkit centers around an image display object which supports zooming +and panning, color and intensity mapping, a choice of several automatic cut +levels algorithms and canvases for plotting scalable geometric forms. In +addition to this widget, a general purpose \"reference\" FITS viewer is +provided, based on a plugin framework. A fairly complete set of standard plugins +are provided for features that we expect from a modern FITS viewer: panning and +zooming windows, star catalog access, cuts, star pick/FWHM, thumbnails, etc.") +(license license:bsd-3))) + +(define-public ginga-qt5 + (package/inherit python-ginga + (name "ginga-qt5") + (inputs + (modify-inputs (package-inputs python-ginga) + (prepend python-pyqt))) + (synopsis "Qt5 image viewer build based on python-ginga library"))) + (define-public qfits (package (name "qfits") @@ -982,7 +1052,7 @@ programs for the manipulation and analysis of astronomical data.") (define-public phd2 (package (name "phd2") - (version "2.6.12") + (version "2.6.13") (source (origin (method git-fetch) @@ -991,7 +1061,7 @@ programs for the manipulation and analysis of astronomical data.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "16695vyczl861fz5qinp23wqn6hzv5h1aspz9x21x67w0a3smbmy")) + (base32 "0shr50ngi7dliijy8fxrd1c4hzkm4vp4m0a4m0d9gvrx56vzyx0s")) (modules '((guix build utils) (ice-9 ftw) (srfi srfi-26))) @@ -1094,7 +1164,7 @@ crowded star fields.") (define-public siril (package (name "siril") - (version "1.2.0") + (version "1.2.1") (source (origin (method git-fetch) (uri (git-reference @@ -1102,7 +1172,7 @@ crowded star fields.") (commit version))) (sha256 (base32 - "0ss1m9w4cz1752vp5738057nzmqc6k7fc9pi6kr9cwgspi1haall")) + "1lc6ga1n18br43rlj8qmg23chfniyvjz3vx73km6sv171z4c2fwy")) (file-name (git-file-name name version)))) (build-system meson-build-system) (native-inputs (list cmake git glib libconfig pkg-config)) @@ -1478,13 +1548,13 @@ accurately in real time at any rate desired.") (define-public python-astropy (package (name "python-astropy") - (version "5.3.4") + (version "6.0.0") (source (origin (method url-fetch) (uri (pypi-uri "astropy" version)) (sha256 - (base32 "1n7iwvjari4xv37094cpiapmjhhm57b04hi4r40wqb5czbigg46l")) + (base32 "1nbpqx7ibm8zsyyy17y5rmfjamwz6mv0sy4drlisap9hald81k83")) (modules '((guix build utils))) (snippet '(begin @@ -1499,64 +1569,69 @@ accurately in real time at any rate desired.") (for-each delete-file-recursively '("expat" "wcslib"))))))) (build-system python-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'preparations - (lambda _ - ;; Use our own libraries in place of bundles. - (setenv "ASTROPY_USE_SYSTEM_ALL" "1") - ;; Some tests require a writable home. - (setenv "HOME" "/tmp") - ;; Relax xfail tests. - (substitute* "setup.cfg" - (("xfail_strict = true") "xfail_strict = false")) - ;; Replace all references to external ply. - (let ((ply-files '("coordinates/angle_formats.py" - "utils/parsing.py"))) - (with-directory-excursion "astropy" - (map (lambda (file) - (substitute* file (("astropy.extern.ply") - "ply"))) - ply-files))) - ;; Replace reference to external configobj. - (with-directory-excursion "astropy/config" - (substitute* "configuration.py" - (("from astropy.extern.configobj ") ""))))) - ;; This file is opened in both install and check phases. - (add-before 'install 'writable-compiler - (lambda _ (make-file-writable "astropy/_compiler.c"))) - (add-before 'check 'writable-compiler - (lambda _ (make-file-writable "astropy/_compiler.c"))) - (replace 'check - (lambda* (#:key inputs outputs tests? #:allow-other-keys) - (when tests? - (add-installed-pythonpath inputs outputs) - ;; Extensions have to be rebuilt before running the tests. - (invoke "python" "setup.py" "build_ext" "--inplace") - (invoke "python" "-m" "pytest" "--pyargs" "astropy" - ;; Skip tests that need remote data. - "-k" (string-append - "not remote_data" - ;; XXX: Check why this tests failing. - " and not test_ignore_sigint" - " and not test_parquet_filter" - ;; See https://github.com/astropy/astropy/issues/15537 - " and not test_pvstar")))))))) + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'preparations + (lambda _ + ;; Use our own libraries in place of bundles. + (setenv "ASTROPY_USE_SYSTEM_ALL" "1") + ;; Relax xfail tests. + (substitute* "pyproject.toml" + (("xfail_strict = true") "xfail_strict = false")) + ;; Replace reference to external ply. + (substitute* "astropy/utils/parsing.py" + (("astropy.extern.ply") "ply")) + ;; Replace reference to external configobj. + (substitute* "astropy/config/configuration.py" + (("from astropy.extern.configobj ") "")))) + ;; This file is opened in both install and check phases. + (add-before 'install 'writable-compiler + (lambda _ + (make-file-writable "astropy/_compiler.c"))) + (add-before 'check 'prepare-test-environment + (lambda _ + ;; Some tests require a writable home. + (setenv "HOME" "/tmp") + (make-file-writable "astropy/_compiler.c") + ;; Extensions have to be rebuilt before running the tests. + (invoke "python" "setup.py" "build_ext" "--inplace" + "-j" (number->string (parallel-job-count))))) + ;; TODO: The swap to pyproject-build-system introduced all tests + ;; failed due to pytest could not load conftest.py, find out how + ;; to resolve it and migrate completely to pyproject-build-system. + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "-m" "pytest" "--pyargs" "astropy" + ;; with -n : 133.00s + ;; without -n : 326.14s + "-n" (number->string (parallel-job-count)) + "-k" (string-append + ;; Skip tests that need remote data. + "not remote_data" + ;; E astropy.samp.errors.SAMPProxyError: + ;; <SAMPProxyError 1: 'Timeout expired!'> + " and not test_main" + ;; E ModuleNotFoundError: No module named 'wofz' + " and not test_pickle_functional")))))))) (native-inputs (list pkg-config python-colorlog python-coverage - python-cython + python-cython-3 python-extension-helpers python-h5py python-ipython python-jplephem + python-matplotlib python-objgraph python-pandas python-pyarrow python-pytest python-pytest-astropy python-pytest-astropy-header + python-pytest-mpl python-pytest-xdist python-scikit-image python-scipy @@ -1567,7 +1642,8 @@ accurately in real time at any rate desired.") (inputs (list expat wcslib)) (propagated-inputs - (list python-configobj + (list python-astropy-iers-data + python-configobj python-numpy python-packaging python-ply @@ -1616,6 +1692,50 @@ astronomy and astrophysics.") (description "This package provides HEALPix to the Astropy project.") (license license:bsd-3))) +(define-public python-astropy-iers-data + (package + (name "python-astropy-iers-data") + ;; In case of changing the source method git-fetch, consider to check the + ;; tag as it's not following the PyPI version, see + ;; <https://github.com/astropy/astropy-iers-data/issues/17>. + (version "0.2024.2.19.0.28.47") + (source + (origin + (method url-fetch) + (uri (pypi-uri "astropy-iers-data" version)) + (sha256 + (base32 "0j42hkl8z42x5n3aacld9cvacjzg79lqsivm3xn6bv1gjgy69br9")))) + (build-system pyproject-build-system) + (arguments + (list + ;; Dependencies cycle wit python-astropy, see + ;; <https://github.com/astropy/astropy-iers-data/issues/21>. + #:tests? #f + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'set-env-version + (lambda _ + (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))))) + (native-inputs + (list python-hypothesis + python-pytest + python-pytest-remotedata + python-setuptools-scm)) + (home-page "https://docs.astropy.org/en/latest/utils/iers.html") + (synopsis "IERS Earth Rotation and Leap Second tables for the astropy core package") + (description + "The @code{iers} package provides access to the tables provided by the +@acronym{International Earth Rotation and Reference Systems, IERS} service, in +particular the +@url{https://www.iers.org/IERS/EN/DataProducts/EarthOrientationData/eop.html, +Earth Orientation data} allowing interpolation of published UT1-UTC and polar +motion values for given times. The UT1-UTC values are used in +@url{https://docs.astropy.org/en/latest/time/index.html#astropy-time, Time and +Dates (astropy.time)} to provide UT1 values, and the polar motions are used in +@code{astropy.coordinates} to determine Earth orientation for +celestial-to-terrestrial coordinate transformations.") + (license license:bsd-3))) + (define-public python-astroquery (package (name "python-astroquery") @@ -1807,7 +1927,7 @@ bad pixel tracking throughout the reduction process.") (define-public python-cdflib (package (name "python-cdflib") - (version "1.2.3") + (version "1.2.4") (source (origin (method git-fetch) ; no tests in pypi archive @@ -1816,7 +1936,7 @@ bad pixel tracking throughout the reduction process.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0vpgcbc9pmx0qqfia1frnwq3jkgfp8y3ikqdnzs5bs1sr13p9p3w")))) + (base32 "0pjd4dwwlza2592zgdccw1s341s3ikg44pwsr1gk8vjix40m46fr")))) (build-system pyproject-build-system) (arguments ;; Disable shaky test. @@ -1859,13 +1979,13 @@ attempting to maintain ISTP compliance (define-public python-crds (package (name "python-crds") - (version "11.17.14") + (version "11.17.16") (source (origin (method url-fetch) (uri (pypi-uri "crds" version)) (sha256 (base32 - "1z9lrwrb07s9kn28nammjx75qb0ky7srd9i40dnkmm9zsaqz5jfm")))) + "0j84l7132mvwww2y83h2dgz5qw792ilp3hml4h12n7ydks0w0534")))) (build-system pyproject-build-system) (arguments (list @@ -1967,7 +2087,7 @@ used with local NetDRMS sites.") (define-public python-drizzle (package (name "python-drizzle") - (version "1.14.4") + (version "1.15.0") (source (origin (method git-fetch) ;PyPi doesn't have the test data sets @@ -1976,7 +2096,7 @@ used with local NetDRMS sites.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "01zsq1r3p9lig0aik01szncd7nbmyi561mhi1n44yjhh7d86fp8y")))) + (base32 "06qh3b60xvm5f2p09l2njwwsh0n95s54r730fyfn66w8mvr1jk82")))) (build-system pyproject-build-system) (arguments (list @@ -1992,7 +2112,7 @@ used with local NetDRMS sites.") (propagated-inputs (list python-astropy python-numpy)) (native-inputs - (list python-flake8 python-pytest python-setuptools-scm)) + (list python-pytest python-setuptools-scm)) (home-page "https://github.com/spacetelescope/drizzle") (synopsis "Astronomical tool for combining dithered images into a single image") @@ -2051,6 +2171,32 @@ for a table giving the position of a planet, asteroid, or comet for a series of dates.") (license license:expat))) +(define-public python-extinction + (package + (name "python-extinction") + (version "0.4.6") + (source + (origin + (method git-fetch) ; No tests in PyPI + (uri (git-reference + (url "https://github.com/kbarbary/extinction") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1adxq926jd469mxm6llvsljgf2jqb06905h61i9qzc7m2yrm4wga")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags #~(list "test.py"))) + (native-inputs (list python-cython python-pytest)) + (propagated-inputs (list python-numpy)) + (home-page "http://github.com/kbarbary/extinction") + (synopsis "Fast interstellar dust extinction laws") + (description + "This package provides a cython-optimized implementations of empirical dust +exitinction laws found in the literature.") + (license license:expat))) + (define-public python-hvpy (package (name "python-hvpy") @@ -2160,6 +2306,8 @@ can be described by @acronym{WCS, World Coordinate System} translations.") (build-system pyproject-build-system) (arguments (list + #:test-flags + #~(list "-n" "auto") #:phases #~(modify-phases %standard-phases ;; This file is opened in both install and check phases. @@ -2190,6 +2338,7 @@ can be described by @acronym{WCS, World Coordinate System} translations.") (list python-cython python-extension-helpers python-pytest-astropy + python-pytest-xdist python-semantic-version python-setuptools-scm)) (home-page "https://github.com/astropy/photutils") @@ -2198,6 +2347,9 @@ can be described by @acronym{WCS, World Coordinate System} translations.") of astronomical sources.") (license license:bsd-3))) +;; XXX: The project is archived, maintained fork is available see +;; <https://github.com/poliastro/poliastro/issues/1640>. +;; Maintained fork <https://github.com/pleiszenburg/hapsira>. (define-public python-poliastro (package (name "python-poliastro") @@ -2230,6 +2382,10 @@ of astronomical sources.") " and not test_porkchop_plotting")) #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "pyproject.toml" + (("5.0,<6") "5.0,<7")))) (add-after 'unpack 'matplotlib-compatibility (lambda _ (substitute* "src/poliastro/plotting/static.py" @@ -2294,6 +2450,10 @@ Low-Earth Orbit (LEO).") (base32 "0s8rb61q8dz66s8d3qg44kb6bb5gi40zl41ik9wyccgb4kyf3brp")))) (build-system pyproject-build-system) + (arguments + (list + #:test-flags + #~(list "-n" "auto"))) (propagated-inputs ;; XXX: With python-synphot (marked as optional) package added to the list ;; it tries to download from remote host during tests and fails. Overall @@ -2308,8 +2468,10 @@ Low-Earth Orbit (LEO).") python-pandas python-pytest python-pytest-astropy - python-sphinx - python-setuptools-scm)) + python-pytest-xdist + python-scikit-image + python-setuptools-scm + python-sphinx)) (home-page "https://poppy-optics.readthedocs.io/") (synopsis "Physical Optics Propagation in Python") (description @@ -2385,6 +2547,8 @@ Virtual observatory (VO) using Python.") (build-system pyproject-build-system) (arguments (list + #:test-flags + #~(list "-n" "auto") #:phases #~(modify-phases %standard-phases ;; This file is opened in both install and check phases. @@ -2409,6 +2573,7 @@ Virtual observatory (VO) using Python.") python-pytest-arraydiff python-pytest-astropy python-pytest-runner + python-pytest-xdist python-setuptools-scm)) (home-page "https://github.com/astropy/regions") (synopsis "Package for region handling") @@ -2522,16 +2687,24 @@ orbits described in TLE files.") (arguments (list #:test-flags - #~(list "-k" (string-append - ;; XXX: Failed: DID NOT RAISE <class 'ModuleNotFoundError'> - ;; It struggles to find python-opencsv package info with - ;; 'importlib.metadata' - "not test_main_nonexisting_module" - " and not test_main_stdlib_module") - ;; Requries SpicePy not packed in Guix yet. - "--ignore=sunpy/coordinates/tests/test_spice.py") + #~(list + "-n" "auto" + "-k" (string-append + ;; XXX: Failed: DID NOT RAISE <class 'ModuleNotFoundError'> + ;; It struggles to find python-opencsv package info with + ;; 'importlib.metadata' + "not test_main_nonexisting_module" + " and not test_main_stdlib_module") + ;; Requries SpicePy not packed in Guix yet. + "--ignore=sunpy/coordinates/tests/test_spice.py") #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.cfg" + ;; It's already updated in master branch, but not released yet. + ;; drms>=0.6.1,<0.7.0 + (("0.7.0") "0.7.2")))) (add-before 'install 'writable-compiler (lambda _ (make-file-writable "sunpy/_compiler.c"))) @@ -2589,6 +2762,50 @@ python_files = test_*.py")))))))) SolarSoft data analysis environment.") (license license:bsd-2))) +(define-public python-sunpy-soar + (package + (name "python-sunpy-soar") + (version "1.10") + (source + (origin + (method url-fetch) + (uri (pypi-uri "sunpy-soar" version)) + (sha256 + (base32 "0pb7dr06n20hdhlqf8npb4j1qb5034cgwqi3iciqdi1wxyy5pjc6")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + ;; Disabe tests requireing network access. + #~(list "-k" (string-append + "not test_search" + " and not test_search_low_latency" + " and not test_insitu_search" + " and not test_no_results" + " and not test_no_instrument" + " and not test_download_path" + " and not test_search_soop" + " and not test_when_soar_provider_passed" + " and not test_when_sdac_provider_passed" + " and not test_when_wrong_provider_passed")) + #:phases + #~(modify-phases %standard-phases + (add-before 'check 'set-home-env + (lambda _ + ;; Tests require HOME to be set. + ;; Permission denied: '/homeless-shelter' + (setenv "HOME" "/tmp")))))) + (propagated-inputs + (list python-sunpy)) + (native-inputs + (list python-pytest)) + (home-page "https://docs.sunpy.org/projects/soar") + (synopsis "Solar Orbiter Archive plugin for SunPy") + (description + "This package provides a @code{sunpy} FIDO plugin for accessing data in the +@acronym{Solar Orbiter Archive, SOAR}.") + (license license:bsd-2))) + (define-public python-astral (package (name "python-astral") @@ -2661,9 +2878,17 @@ elevation, solar azimuth, rahukaalam, and the phases of the moon.") (sha256 (base32 "0cqxgmk46gv2qa2kls8fph105lgwbwf13hvizh6w85mzgypyp740")))) (build-system pyproject-build-system) + (arguments + (list + #:test-flags + #~(list "-n" "auto"))) (propagated-inputs (list python-astropy - python-aplpy + ;; XXX: Currently failing in upstream as it's optional silent + ;; until a new version is released, see: + ;; <https://github.com/aplpy/aplpy/issues/492>. + ;; + ;; python-aplpy python-casa-formats-io python-dask python-distributed @@ -2683,6 +2908,7 @@ elevation, solar azimuth, rahukaalam, and the phases of the moon.") ;; in [noviz] option. ;; python-pvextractor python-pytest-astropy + python-pytest-xdist python-regions python-semantic-version python-setuptools-scm)) @@ -2902,13 +3128,13 @@ image processing functions: @code{xyxymatch}, @code{geomap}.") (define-public python-stcal (package (name "python-stcal") - (version "1.5.2") + (version "1.6.0") (source (origin (method url-fetch) (uri (pypi-uri "stcal" version)) (sha256 - (base32 "0r1a9f476f8ivhrwbcny3rnj9s4plaps6p36c22w73g546d476b7")))) + (base32 "12skkbc59alw3asvw36x7nvibx68ccfiqdlgs8b5cvdns5j47f9n")))) (build-system pyproject-build-system) (arguments (list @@ -2923,7 +3149,7 @@ image processing functions: @code{xyxymatch}, @code{geomap}.") (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list opencv ;Provides OpenCV-Python - python-asdf-3.0 + python-asdf python-astropy python-gwcs python-numpy @@ -2945,13 +3171,13 @@ image processing functions: @code{xyxymatch}, @code{geomap}.") (define-public python-stdatamodels (package (name "python-stdatamodels") - (version "1.9.0") + (version "1.9.1") (source (origin (method url-fetch) (uri (pypi-uri "stdatamodels" version)) (sha256 - (base32 "16hwhvd8bqm1cmkgcn1v43hp2cvf094fz954rxb6jv2xx6csic15")))) + (base32 "0h1v5c96c4q44b2npq9953x44dr6pwmkr1s05wfixdv95arqd8v0")))) (build-system pyproject-build-system) (arguments (list @@ -3179,8 +3405,6 @@ low quality ones") (sha256 (base32 "1na3gyb3nzb5gdgccs1653j2gnz6w3v1mqzhyhkx3yqw8bs3q5x0")))) (build-system gnu-build-system) - (supported-systems '("i686-linux" "x86_64-linux" - "armhf-linux" "aarch64-linux")) (arguments (list #:tests? #f ; no tests provided @@ -3196,7 +3420,9 @@ low quality ones") '("CPU_TARGET=i386")) ("x86_64-linux" '("CPU_TARGET=x86_64")) - ((or "armhf-linux" "aarch64-linux") + ;; There is no a case for RISCV in upstream, attempt to treat it + ;; as ARM. + ((or "armhf-linux" "aarch64-linux" "riscv64") '("CPU_TARGET=armv7l")) (_ '())) (string-append "PREFIX=" #$output)) @@ -3467,7 +3693,7 @@ floating-point (no compression, LZW- or ZIP-compressed), FITS 8-bit, 16-bit, (define-public indi-2.0 (package (name "indi") - (version "2.0.5") + (version "2.0.6") (source (origin (method git-fetch) @@ -3476,7 +3702,7 @@ floating-point (no compression, LZW- or ZIP-compressed), FITS 8-bit, 16-bit, (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1lmp5p1rsckb8j44g34wxpyjzzy2ff78llxyc84pv5xs9pay6p4z")))) + (base32 "0j1yr8wz6q6xi4dskv3yyhm0valsyfhcw1n8xpfgzbzbdzc8biyw")))) (build-system cmake-build-system) (arguments ;; TODO: fix failing tests on aarch64-system. @@ -3636,13 +3862,13 @@ milliarcsecond).") (define-public python-jwst (package (name "python-jwst") - (version "1.12.5") + (version "1.13.4") (source (origin (method url-fetch) (uri (pypi-uri "jwst" version)) (sha256 (base32 - "0blrl00lz1snhcnr7j59nh05rnpqxdnfp8hhgagkr50h85q4smrn")))) + "0n5cfjayg15kf5p6pns7k2zfcldqz1464ndbldgzanc33fp9wnfz")))) (build-system pyproject-build-system) (arguments (list @@ -3859,36 +4085,54 @@ Features: (license license:expat))) (define-public python-pysynphot - (package - (name "python-pysynphot") - (version "2.0.0") - (source (origin - (method url-fetch) - (uri (pypi-uri "pysynphot" version)) - (sha256 - (base32 - "1rr29m63bnj47f6gvbvg3pm1296x14ad29c6qd0sdj4f4ilrzhj5")))) - (build-system pyproject-build-system) - (arguments - (list #:phases #~(modify-phases %standard-phases - (add-before 'check 'set-env-data-path - (lambda _ - (setenv "PYSYN_CDBS" - (string-append #$output "/crds"))))))) - (native-inputs (list python-pytest python-pytest-remotedata - python-setuptools-scm)) - (propagated-inputs (list python-astropy python-beautifulsoup4 python-numpy - python-pytest-astropy-header python-six)) - (home-page "https://github.com/spacetelescope/pysynphot") - (synopsis "Python Synthetic Photometry Utilities") - (description - "Astrolib PySynphot (hereafter referred to only as pysynphot) is an + ;; XXX: 2.0.0 was released in 2021 there are a lot of changes since that + ;; time and it failed to build with python-astropy 6.0.0, use the latest + ;; upstream commit for now. + (let ((commit "54e9e2a624910c4d177ca70f8e9fb8110c8fae5b") + (revision "0")) + (package + (name "python-pysynphot") + (version (git-version "2.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/spacetelescope/pysynphot") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "09sivpfqilk86zp8k5wmrs4g48m4kypn34jcy95y5h4ygbn5zbzy")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'set-version + (lambda _ + (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "2.0.0"))) + (add-before 'check 'set-env-data-path + (lambda _ + (setenv "PYSYN_CDBS" (string-append #$output "/crds"))))))) + (native-inputs + (list python-pytest + python-pytest-remotedata + python-setuptools-scm)) + (propagated-inputs + (list python-astropy + python-beautifulsoup4 + python-numpy + python-pytest-astropy-header + python-six)) + (home-page "https://github.com/spacetelescope/pysynphot") + (synopsis "Python Synthetic Photometry Utilities") + (description + "Astrolib PySynphot (hereafter referred to only as pysynphot) is an object-oriented replacement for STSDAS SYNPHOT synthetic photometry package in IRAF. @code{pysynphot} simulates photometric data and spectra as they are observed with the Hubble Space Telescope (HST). Passbands for standard photometric systems are available, and users can incorporate their own filters, spectra, and data.") - (license license:bsd-3))) + (license license:bsd-3)))) (define-public python-sep (package @@ -4007,7 +4251,7 @@ between image and reference catalogs. Currently only aligning images with @code{FITS WCS} and @code{JWST gWCS} are supported.") (license license:bsd-3))) -(define-public python-asdf-3.0 +(define-public python-asdf (package (name "python-asdf") (version "3.0.1") @@ -4018,6 +4262,10 @@ between image and reference catalogs. Currently only aligning images with (sha256 (base32 "1jsk7b4mx04l0a08j832vnl309dba3gjnha9mbd61dzs9ridrfna")))) (build-system pyproject-build-system) + (arguments + (list + #:test-flags + #~(list "-n" "auto"))) (native-inputs (list python-fsspec python-packaging @@ -4025,6 +4273,7 @@ between image and reference catalogs. Currently only aligning images with python-pytest python-pytest-doctestplus python-pytest-remotedata + python-pytest-xdist python-semantic-version python-setuptools-scm)) (propagated-inputs @@ -4045,34 +4294,6 @@ interchange format for scientific data. This package contains the Python implementation of the ASDF Standard.") (license license:bsd-3))) -(define-public python-asdf-2.15 - (package - (inherit python-asdf-3.0) - (version "2.15.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "asdf" version)) - (sha256 - (base32 "11s56797l5330kkhppkyz0bsvms016knmyswj4gx91zrxf8iqvv8")))) - (arguments - (list #:test-flags - #~(list "-k" (string-append - "not test_overwrite" - " and not test_tagging_scalars" - " and not test_info_command" - " and not test_array_inline_threshold_recursive")))) - (native-inputs - (modify-inputs (package-native-inputs python-asdf-3.0) - (prepend python-astropy python-pytest-openfiles))) - (propagated-inputs - (modify-inputs (package-propagated-inputs python-asdf-3.0) - (prepend python-jsonschema python-importlib-resources))))) - -(define-public python-asdf - ;; Default version of ASDF.. - python-asdf-2.15) - (define-public python-asdf-standard (package (name "python-asdf-standard") @@ -4117,13 +4338,13 @@ up-front for extensibility.") (define python-asdf-transform-schemas (package (name "python-asdf-transform-schemas") - (version "0.3.0") + (version "0.4.0") (source (origin (method url-fetch) (uri (pypi-uri "asdf_transform_schemas" version)) (sha256 - (base32 "1midgn575970p5cnsh9y6bz77fjr392b5nfxb3z0id6c49xzzwhc")))) + (base32 "1jlls8mirwarf8d67gaix39d8zcx1rx8fmr9qdzrbyrmxqzxqzyy")))) (build-system pyproject-build-system) (arguments ;; Dependency cycle with python-asdf @@ -4149,8 +4370,15 @@ package such as asdf-astropy.") (sha256 (base32 "1x6mipg76c6qldq8s2p2wpsq0cpr9b5krp62xskljdz1f84abyg3")))) (build-system pyproject-build-system) + (arguments + (list + #:test-flags + #~(list "-n" "auto"))) (native-inputs - (list python-pytest python-semantic-version python-setuptools-scm)) + (list python-pytest + python-pytest-xdist + python-semantic-version + python-setuptools-scm)) (propagated-inputs (list python-asdf)) (home-page "https://github.com/asdf-format/asdf-coordinates-schemas") @@ -4162,8 +4390,8 @@ install an implementation package such as asdf-astropy.") (define python-asdf-fits-schemas ;; TODO: No release, change to tag when it's ready. - (let ((commit "572bb370d777f3a325b25c1af9d76e1b7d27dcea") - (revision "0")) + (let ((commit "d1b5e7a12a49fe61d43855045bab106be34cd252") + (revision "1")) (package (name "python-asdf-fits-schemas") (version (git-version "0.0.1" revision commit)) @@ -4176,7 +4404,7 @@ install an implementation package such as asdf-astropy.") (file-name (git-file-name name version)) (sha256 (base32 - "1yqnzd0gcrdfl0jqm8m8kz5fd36i8lgh7xkglmp1chsi1cc6mkz2")))) + "1h2xbk9c9l2959i3sdnwviv3z0hp1f0lba2vz9hpzgcm46qadqp8")))) (build-system pyproject-build-system) (arguments (list @@ -4197,8 +4425,8 @@ install an implementation package such as asdf-astropy.") (define python-asdf-time-schemas ;; TODO: No release, change to tag when it's ready. - (let ((commit "e9174083d9cfd3c6f7ded9eeb360d99ccb8d9d18") - (revision "2")) + (let ((commit "a3062066ee70f1b934f7339d1ce96a5c5f61f055") + (revision "3")) (package (name "python-asdf-time-schemas") (version (git-version "0.0.1" revision commit)) @@ -4211,7 +4439,7 @@ install an implementation package such as asdf-astropy.") (file-name (git-file-name name version)) (sha256 (base32 - "1i40hcxp8sds2zq939fwczjlshfqb9r9pnzy3a44c3wqdbwhcbdb")))) + "1i8lm2d18r6fadsch52dxc2zp1swkfa8w40s03albn7p290n4a97")))) (build-system pyproject-build-system) (arguments (list @@ -4266,9 +4494,12 @@ install an implementation package such as asdf-astropy.") (base32 "061y7r1d2fqlr8a6gyaffqa3z5m0ymljahhvxzcb71355xkqig7v")))) (build-system pyproject-build-system) (arguments - (list #:phases #~(modify-phases %standard-phases - (add-before 'check 'set-home-env - (lambda _ (setenv "HOME" "/tmp")))))) + (list + #:test-flags + #~(list "-n" "auto") + #:phases #~(modify-phases %standard-phases + (add-before 'check 'set-home-env + (lambda _ (setenv "HOME" "/tmp")))))) (native-inputs (list python-coverage python-h5py @@ -4294,18 +4525,27 @@ Astropy objects.") (define python-asdf-wcs-schemas (package (name "python-asdf-wcs-schemas") - (version "0.1.1") + (version "0.3.0") (source (origin (method url-fetch) (uri (pypi-uri "asdf_wcs_schemas" version)) (sha256 - (base32 "0khyab9mnf2lv755as8kwhk3lqqpd3f4291ny3b9yp3ik86fzhz1")))) + (base32 "1r9ls2skgwq6my68nfwfah1s0q6bm2qq97s0h79vwh997jy97rai")))) (build-system pyproject-build-system) + (arguments + (list + #:test-flags #~(list "tests"))) (native-inputs - (list python-pytest python-setuptools-scm python-semantic-version)) + (list python-asdf + python-pytest + python-pytest-openfiles + python-semantic-version + python-setuptools-scm)) (propagated-inputs - (list python-asdf)) + (list python-asdf-standard + python-asdf-transform-schemas + python-asdf-unit-schemas)) (home-page "https://github.com/asdf-format/asdf-wcs-schemas") (synopsis "ASDF WCS Schemas") (description @@ -4355,20 +4595,23 @@ default) to world coordinates.") (define-public python-rad (package (name "python-rad") - (version "0.18.0") + (version "0.19.0") (source (origin (method url-fetch) (uri (pypi-uri "rad" version)) (sha256 (base32 - "1wgnbhldgq0j55yzg33y11vd5k5nzwckiccxywvmq518qh19pky5")))) + "0cp3nrv1vq3g61zx6dq36vdlxd5i8g52vg4hwpxakmwvqvc8p3gd")))) (build-system pyproject-build-system) (arguments (list - ;; XXX: Tests introduce dependencies cycle, breaking it by disable them. + ;; Ignore tests requiring python-crds to break cycle: ;; python-rad -> python-roman-datamodels -> python-crds -> python-rad - #:tests? #f)) - (native-inputs (list python-semantic-version python-setuptools-scm)) + #:test-flags #~(list "--ignore=tests/test_schemas.py"))) + (native-inputs + (list python-pytest + python-semantic-version + python-setuptools-scm)) (propagated-inputs (list python-asdf python-asdf-astropy)) (home-page "https://github.com/spacetelescope/rad") (synopsis "Roman Attribute Dictionary") @@ -4414,19 +4657,58 @@ channels @end itemize") (license license:bsd-3))) +(define-public python-radiospectra + (package + (name "python-radiospectra") + (version "0.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "radiospectra" version)) + (sha256 + (base32 "0gq61ywk7li0gxwmp4hp2hc4zbrlqgn8zy0sz24qh55kn5l5gxjr")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'check 'set-home-env + (lambda _ + ;; Tests require HOME to be set. + ;; Permission denied: '/homeless-shelter' + (setenv "HOME" "/tmp")))))) + (propagated-inputs + (list python-cdflib + python-matplotlib + python-numpy + python-scipy + python-sunpy)) + (native-inputs + (list python-pytest-astropy + python-setuptools-scm + python-sunpy-soar)) + (home-page "https://docs.sunpy.org/projects/radiospectra") + (synopsis "Support for radio spectra on solar physics") + (description + "@code{radiospectra} provides support for some type of radio spectra in +solar physics.") + (license license:bsd-2))) + (define-public python-roman-datamodels (package (name "python-roman-datamodels") - (version "0.18.0") + (version "0.19.0") (source (origin (method url-fetch) (uri (pypi-uri "roman_datamodels" version)) (sha256 (base32 - "0crlmd99p2nyqmrbykdqqng7v8zb4sibm8j9aqrq3ppak3r3r7q1")))) + "1ym06rj637fq9gxncdrn3phplk5djrzdwqghszis0di1dvsrif4j")))) (build-system pyproject-build-system) (arguments (list + #:test-flags + #~(list "-n" "auto") #:phases #~(modify-phases %standard-phases (add-after 'unpack 'set-env @@ -4443,6 +4725,7 @@ channels (native-inputs (list python-pytest python-pytest-doctestplus python-pytest-env + python-pytest-xdist python-semantic-version python-setuptools-scm)) (home-page "https://github.com/spacetelescope/roman_datamodels") @@ -4495,13 +4778,13 @@ astronomical images, especially when there is no WCS information available.") (define-public python-skyfield (package (name "python-skyfield") - (version "1.47") + (version "1.48") (source (origin (method url-fetch) (uri (pypi-uri "skyfield" version)) (sha256 - (base32 "0272pwk88csmrrl44fc4l52agd68pkg4zbmdhs7gliq5q9wf3hrs")))) + (base32 "1qaz0k0lkni3y423r66mkvj99bx08qa9xgqp3cs2df70cmdz30cb")))) (build-system python-build-system) (arguments ;; XXX: Tests depend on custom test framework |