From 02db3f51b7a33a85caa982e63c98d7effbe1a9a9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 15 Nov 2022 11:02:45 +0100
Subject: gnu: Add r-disgenet2r.
* gnu/packages/bioinformatics.scm (r-disgenet2r): New variable.
---
gnu/packages/bioinformatics.scm | 40 ++++++++++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
(limited to 'gnu/packages')
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a8ebd62331..e411839043 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12101,6 +12101,46 @@ (define-public biobambam2
;; the GPL, but the license headers include the "or later" clause.
(license license:gpl3+)))
+(define-public r-disgenet2r
+ (let ((commit "8d8ce37da7384004038b25e784b9f7cfe2353de1")
+ (revision "1"))
+ (package
+ (name "r-disgenet2r")
+ (version (git-version "0.99.2" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://bitbucket.org/ibi_group/disgenet2r")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0dvk75s6wqssdyfn5iczldb8krvrz2s0dslxns4571cb2pr09b84"))))
+ (properties `((upstream-name . "disgenet2r")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-data-table
+ r-ggplot2
+ r-gtable
+ r-httr
+ r-igraph
+ r-jsonlite
+ r-purrr
+ r-reshape
+ r-reshape2
+ r-sparql
+ r-stringr
+ r-tidyr
+ r-tidyverse
+ r-venndiagram))
+ (native-inputs (list r-knitr))
+ (home-page "https://bitbucket.org/ibi_group/disgenet2r")
+ (synopsis "Query, visualize, and expand DisGeNET data")
+ (description
+ "This is an R package to query and expand DisGeNET data, and to
+visualize the results within R framework. The disgenet2r package is designed
+to retrieve data from DisGeNET v6.0 (Jan, 2019).")
+ (license license:expat))))
+
(define-public r-dyngen
(package
(name "r-dyngen")
--
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