From 05fb1e0017030f1c0cbc7e9a1adeccca57ef1d9d Mon Sep 17 00:00:00 2001
From: Ben Woodcroft <donttrustben@gmail.com>
Date: Sat, 22 Sep 2018 08:19:09 +1000
Subject: gnu: hmmer: Update to 3.2.1.
* gnu/packages/bioinformatics.scm (hmmer): Update to 3.2.1.
[origin]: Remove patch.
[license]: Change to BSD-3.
[supported-systems]: New field.
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
---
.../patches/hmmer-remove-cpu-specificity.patch | 22 ----------------------
1 file changed, 22 deletions(-)
delete mode 100644 gnu/packages/patches/hmmer-remove-cpu-specificity.patch
(limited to 'gnu/packages/patches')
diff --git a/gnu/packages/patches/hmmer-remove-cpu-specificity.patch b/gnu/packages/patches/hmmer-remove-cpu-specificity.patch
deleted file mode 100644
index ba98db4d0e..0000000000
--- a/gnu/packages/patches/hmmer-remove-cpu-specificity.patch
+++ /dev/null
@@ -1,22 +0,0 @@
-This patch removes compilation flags which make the build for the machine
-where compilation takes place, rendering the build not reproducible.
-
-diff --git a/configure b/configure
-index 8b6aaef..49a6afc 100755
---- a/configure
-+++ b/configure
-@@ -6125,14 +6125,6 @@ fi # guess arch
-
- if test "x$ax_gcc_arch" != x -a "x$ax_gcc_arch" != xno; then
- for arch in $ax_gcc_arch; do
-- if test "x$acx_maxopt_portable" = xyes; then # if we require portable code
-- flags="-mtune=$arch"
-- # -mcpu=$arch and m$arch generate nonportable code on every arch except
-- # x86. And some other arches (e.g. Alpha) don't accept -mtune. Grrr.
-- case $host_cpu in i*86|x86_64*) flags="$flags -mcpu=$arch -m$arch";; esac
-- else
-- flags="-march=$arch -mcpu=$arch -m$arch"
-- fi
- for flag in $flags; do
- as_CACHEVAR=`$as_echo "ax_cv_check_cflags__$flag" | $as_tr_sh`
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether C compiler accepts $flag" >&5
--
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