From d9c44e9c6afe145ef274286c0ac47a8592f0790d Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Wed, 14 Oct 2015 20:21:43 +1000 Subject: gnu: diamond: Restrict supported systems to x86_64-linux. * gnu/packages/bioinformatics.scm (diamond) [supported-systems]: Restrict to x86_64-linux. --- gnu/packages/bioinformatics.scm | 3 +++ 1 file changed, 3 insertions(+) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4b7f76b9c6..74a738ef38 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -970,6 +970,9 @@ (define-public diamond and BLASTX alignment mode). The speedup over BLAST is up to 20,000 on short reads at a typical sensitivity of 90-99% relative to BLAST depending on the data and settings.") + ;; diamond fails to build on other platforms + ;; https://github.com/bbuchfink/diamond/issues/18 + (supported-systems '("x86_64-linux")) (license (license:non-copyleft "file://src/COPYING" "See src/COPYING in the distribution.")))) -- cgit v1.2.3 From a0dadf0cb1c95a30fcba1abc58a0db158a89e8cd Mon Sep 17 00:00:00 2001 From: Andreas Enge Date: Sat, 17 Oct 2015 22:42:13 +0200 Subject: gnu: ngs-sdk: Remove unsupported systems. * gnu/packages/bioinformatics.scm (ngs-sdk)[supported-systems]: Keep only x86 based systems. --- gnu/packages/bioinformatics.scm | 4 ++++ 1 file changed, 4 insertions(+) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 74a738ef38..1a77ebc83e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2182,6 +2182,10 @@ (define-public ngs-sdk (lambda _ (chdir "ngs-sdk") #t) %standard-phases)))) (native-inputs `(("perl" ,perl))) + ;; According to the test + ;; unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) + ;; in ngs-sdk/setup/konfigure.perl + (supported-systems '("i686-linux" "x86_64-linux")))) (home-page "https://github.com/ncbi/ngs") (synopsis "API for accessing Next Generation Sequencing data") (description -- cgit v1.2.3 From ab29be81c5b4211fc9aa5db46f7d5c3c92a84964 Mon Sep 17 00:00:00 2001 From: Andreas Enge Date: Sat, 17 Oct 2015 22:51:12 +0200 Subject: gnu: ngs-sdk: Correct typo. * gnu/packages/bioinformatics.scm (ngs-sdk): Correct typo. --- gnu/packages/bioinformatics.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1a77ebc83e..51e3df6d81 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2185,7 +2185,7 @@ (define-public ngs-sdk ;; According to the test ;; unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) ;; in ngs-sdk/setup/konfigure.perl - (supported-systems '("i686-linux" "x86_64-linux")))) + (supported-systems '("i686-linux" "x86_64-linux")) (home-page "https://github.com/ncbi/ngs") (synopsis "API for accessing Next Generation Sequencing data") (description -- cgit v1.2.3