From fdc0fefd46a45b70784a4e3f8900cbe593426a9e Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <lars@6xq.net>
Date: Thu, 11 May 2023 08:33:02 +0200
Subject: build-system/pyproject: Use python-sans-pip-wrapper as
default-python.
Also adds python-setuptools and python-wheel to relevant packages,
either to native-inputs or to propagated inputs if the pkg_resources
Python module is loaded at runtime.
* guix/build-system/pyproject.scm (default-python): Default to
python-sans-pip-wrapper.
Change-Id: I2d986c2225114f54459dd6bb360913106e52cdf4
---
gnu/packages/admin.scm | 13 +-
gnu/packages/bioinformatics.scm | 90 +++++++++---
gnu/packages/bootloaders.scm | 3 +
gnu/packages/check.scm | 9 +-
gnu/packages/databases.scm | 12 +-
gnu/packages/digest.scm | 5 +-
gnu/packages/engineering.scm | 11 +-
gnu/packages/fontutils.scm | 19 ++-
gnu/packages/geo.scm | 10 +-
gnu/packages/graph.scm | 13 +-
gnu/packages/graphviz.scm | 4 +-
gnu/packages/license.scm | 17 ++-
gnu/packages/machine-learning.scm | 28 ++--
gnu/packages/monitoring.scm | 5 +-
gnu/packages/package-management.scm | 9 +-
gnu/packages/potassco.scm | 9 +-
gnu/packages/protobuf.scm | 4 +-
gnu/packages/python-build.scm | 3 +-
gnu/packages/python-check.scm | 43 ++++--
gnu/packages/python-compression.scm | 28 ++--
gnu/packages/python-crypto.scm | 25 +++-
gnu/packages/python-science.scm | 22 ++-
gnu/packages/python-web.scm | 63 ++++++---
gnu/packages/python-xyz.scm | 273 ++++++++++++++++++++++++------------
gnu/packages/qt.scm | 6 +-
gnu/packages/rpc.scm | 2 +-
gnu/packages/serialization.scm | 4 +-
gnu/packages/sphinx.scm | 4 +-
gnu/packages/statistics.scm | 14 +-
gnu/packages/terminals.scm | 5 +-
gnu/packages/time.scm | 3 +-
gnu/packages/tor.scm | 4 +-
gnu/packages/tree-sitter.scm | 4 +-
gnu/packages/video.scm | 2 +-
gnu/packages/vim.scm | 8 +-
guix/build-system/pyproject.scm | 7 +-
36 files changed, 555 insertions(+), 226 deletions(-)
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index b1889ceea0..078787061f 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -5080,10 +5080,17 @@ (define-public jc
;; XXX Guix's America/Los_Angeles time zone is somehow broken.
(add-before 'check 'hack-time-zone
(lambda _
- (setenv "TZ" "PST8PDT"))))))
- (native-inputs (list python-pytest))
+ (setenv "TZ" "PST8PDT")
+ (substitute* (find-files "tests" "^test.*\\.py$")
+ (("America/Los_Angeles") "PST8PDT")))))))
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-wheel))
(propagated-inputs
- (list python-pygments python-ruamel.yaml python-xmltodict))
+ (list python-pygments
+ python-ruamel.yaml
+ python-xmltodict))
(home-page "https://github.com/kellyjonbrazil/jc")
(synopsis "Convert the output of command-line tools to JSON")
(description "@code{jc} JSONifies the output of many CLI tools and
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b80efd85d7..821be215c8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2023,8 +2023,13 @@ (define-public python-bcbio-gff
(base32
"1pm1szyxabhn8jismrj9cjhf88ajgcmm39f0cgf36iagw5qakprl"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-biopython python-six))
- (native-inputs (list python-pytest))
+ (native-inputs
+ (list python-pytest))
+ (propagated-inputs
+ (list python-biopython
+ python-setuptools
+ python-six
+ python-wheel))
(home-page "https://github.com/chapmanb/bcbb/tree/master/gff")
(synopsis "Read and write GFF files with Biopython integration")
(description
@@ -2148,7 +2153,7 @@ (define-public python-bulkvis
python-tornado-6
python-tqdm
python-umap-learn))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/LooseLab/bulkVis")
(synopsis "Interactive visualization of bulk RNA-seq data")
(description
@@ -2479,7 +2484,11 @@ (define-public python-demuxem
python-scikit-learn
python-scipy
python-seaborn))
- (native-inputs (list python-cython python-setuptools-scm))
+ (native-inputs
+ (list python-cython
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/lilab-bcb/demuxEM")
(synopsis "Analyze cell-hashing/nucleus-hashing data")
(description
@@ -2578,6 +2587,7 @@ (define-public python-hclust2
python-numpy
python-pandas
python-scipy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/SegataLab/hclust2/")
(synopsis "Plotting heat-maps for publications")
(description
@@ -2649,7 +2659,7 @@ (define-public python-htsget
"111q4pzkav26aa3hkgh948wqlyrq7dq6sjml9z63n3blw8s6b0c4"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-setuptools-scm))
+ (list python-setuptools-scm python-setuptools python-wheel))
(propagated-inputs
(list python-humanize python-requests python-six))
(home-page "https://pypi.org/project/htsget/")
@@ -2749,6 +2759,7 @@ (define-public python-logomaker
(build-system pyproject-build-system)
(propagated-inputs
(list python-matplotlib python-numpy python-pandas))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://logomaker.readthedocs.io")
(synopsis "Package for making Sequence Logos")
(description "Logomaker is a Python package for generating
@@ -2983,7 +2994,8 @@ (define-public python-pegasusio
python-pillow
python-scipy
python-zarr))
- (native-inputs (list python-cython python-setuptools-scm))
+ (native-inputs (list python-cython python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/lilab-bcb/pegasusio")
(synopsis "Read or write single-cell genomics data")
(description
@@ -3042,7 +3054,7 @@ (define-public python-phenograph
python-scikit-learn
python-scipy))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/dpeerlab/PhenoGraph.git")
(synopsis "Graph-based clustering for high-dimensional single-cell data")
(description
@@ -3073,6 +3085,7 @@ (define-public python-phylophlan
python-numpy
python-pandas
python-seaborn))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/biobakery/phylophlan")
(synopsis
"Phylogenetic analysis of microbial isolates and genomes from metagenomes")
@@ -3152,6 +3165,8 @@ (define (cythonized? c/c++-file)
python-cython
kentutils ; for bedGraphToBigWig
python-six
+ python-setuptools
+ python-wheel
;; For the test suite.
python-pytest
python-psutil))
@@ -3597,6 +3612,7 @@ (define-public python-readpaf
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
(propagated-inputs (list python-pandas))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/alexomics/read-paf")
(synopsis "Minimap2 PAF file reader")
(description
@@ -3778,6 +3794,7 @@ (define-public python-biopython
(lambda _ (setenv "HOME" "/tmp"))))))
(propagated-inputs
(list python-numpy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://biopython.org/")
(synopsis "Tools for biological computation in Python")
(description
@@ -4839,7 +4856,8 @@ (define-public python-bx-python
(inputs
(list zlib))
(native-inputs
- (list python-cython python-lzo python-pytest))
+ (list python-cython python-lzo python-pytest python-setuptools
+ python-wheel))
(home-page "https://github.com/bxlab/bx-python")
(synopsis "Tools for manipulating biological data")
(description
@@ -5065,6 +5083,8 @@ (define-public python-pysam
(native-inputs
(list python-cython
python-pytest
+ python-setuptools
+ python-wheel
;; Dependencies below are are for tests only.
samtools
bcftools))
@@ -5158,6 +5178,8 @@ (define-public python-plastid
(native-inputs
`(("python-cython" ,python-cython)
("python-pytest" ,python-pytest)
+ ("python-setuptools" ,python-setuptools)
+ ("python-wheel" ,python-wheel)
("test-data"
,(origin
(method url-fetch)
@@ -5485,7 +5507,8 @@ (define-public python-dnaio
(arguments
(list #:tests? #false)) ;there are none
(native-inputs
- (list python-cython python-pytest python-setuptools-scm))
+ (list python-cython python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(propagated-inputs
(list python-xopen))
(home-page "https://github.com/marcelm/dnaio/")
@@ -5837,6 +5860,7 @@ (define-public python-pybigwig
(list python-numpy))
(inputs
(list libbigwig zlib curl))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/dpryan79/pyBigWig")
(synopsis "Access bigWig files in Python using libBigWig")
(description
@@ -5962,9 +5986,12 @@ (define-public python-schema-salad
python-mypy-extensions
python-rdflib
python-requests
- python-ruamel.yaml))
+ python-ruamel.yaml
+ python-setuptools ; For pkg_resources.
+ python-typing-extensions))
(native-inputs
- (list python-black python-pytest python-pytest-runner python-pytest-xdist))
+ (list python-black python-pytest python-pytest-runner
+ python-wheel))
(home-page "https://github.com/common-workflow-language/schema_salad")
(synopsis "Schema Annotations for Linked Avro Data (SALAD)")
(description
@@ -6048,6 +6075,7 @@ (define-public python-scrublet
python-scikit-learn
python-scipy
python-umap-learn))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/swolock/scrublet")
(synopsis "Tool to indentify and remove doublets in single-cell data")
(description "This package provides a tool for identifying and removing
@@ -6213,6 +6241,7 @@ (define-public cwltool
python-requests
python-ruamel.yaml
python-schema-salad
+ python-setuptools ; For pkg_resources.
python-shellescape
python-spython
python-typing-extensions
@@ -6226,7 +6255,7 @@ (define-public cwltool
python-pytest-cov
python-pytest-mock
python-pytest-runner
- python-pytest-xdist))
+ python-wheel))
(home-page
"https://github.com/common-workflow-language/common-workflow-language")
(synopsis "Common Workflow Language reference implementation")
@@ -6280,7 +6309,8 @@ (define-public python-dendropy
(substitute* "tests/test_datamodel_taxon.py"
(("collections.Iterable")
"collections.abc.Iterable")))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-wheel))
+ (propagated-inputs (list python-setuptools))
(home-page "https://dendropy.org/")
(synopsis "Library for phylogenetics and phylogenetic computing")
(description
@@ -7100,7 +7130,8 @@ (define-public python-bamnostic
(base32
"0cjpzyqz6r4lmiwry2gcxdczwpkhl3lyyjg4s8addln17691ysxk"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-pytest))
+ (propagated-inputs (list python-pytest python-setuptools))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/betteridiot/bamnostic/")
(synopsis "Tool for binary alignment map, random access and parsing")
(description
@@ -7198,7 +7229,7 @@ (define-public python-ete3
python-pyqt
python-scipy))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "http://etetoolkit.org")
(synopsis "Python environment for phylogenetic tree exploration")
(description
@@ -7219,6 +7250,7 @@ (define-public python-illumina-utils
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
(propagated-inputs (list python-matplotlib python-numpy python-levenshtein))
+ (native-inputs (list python-setuptools python-wheel python-pip))
(home-page "https://github.com/meren/illumina-utils")
(synopsis "Library and scripts to work with Illumina paired-end data")
(description
@@ -7242,6 +7274,7 @@ (define-public python-pyani
(propagated-inputs
(list python-biopython python-matplotlib python-pandas
python-scipy python-seaborn))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://widdowquinn.github.io/pyani/")
(synopsis "Calculate genome-scale average nucleotide identity")
(description
@@ -10974,7 +11007,9 @@ (define-public python-screed
(build-system pyproject-build-system)
(native-inputs
(list python-pytest-cov
- python-pytest-runner))
+ python-pytest-runner
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/dib-lab/screed/")
(synopsis "Short read sequence database utilities")
(description "Screed parses FASTA and FASTQ files and generates databases.
@@ -11316,7 +11351,7 @@ (define-public seqmagick
(inputs
(list python-biopython python-pygtrie))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/fhcrc/seqmagick")
(synopsis "Tools for converting and modifying sequence files")
(description
@@ -14553,10 +14588,12 @@ (define-public multiqc
python-requests
python-rich
python-rich-click
+ python-setuptools ; For pkg_resources.
python-simplejson
python-spectra))
(native-inputs
`(("python-pytest" ,python-pytest)
+ ("python-wheel" ,python-wheel)
("tests"
,(let ((commit "c3e7400affe3f3ca996973805797af61b93070ba"))
(origin
@@ -16380,9 +16417,10 @@ (define-public python-goatools
python-pydot
python-requests
python-scipy
+ python-setuptools
python-statsmodels
python-xlsxwriter))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-wheel))
(home-page "https://github.com/tanghaibao/goatools")
(synopsis "Python scripts to find enrichment of GO terms")
(description "Python scripts to find enrichment of GO terms. In addition,
@@ -16498,9 +16536,10 @@ (define-public python-mgatk
python-pysam
python-regex
python-ruamel.yaml
+ python-setuptools
snakemake))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-wheel))
(home-page "https://github.com/caleblareau/mgatk")
(synopsis "Mitochondrial genome analysis toolkit")
(description "This package is a Python-based command line interface for
@@ -18795,6 +18834,7 @@ (define-public python-scanpy
python-patsy
python-scikit-learn
python-scipy
+ python-setuptools ; For pkg_resources.
python-seaborn
python-session-info
python-sinfo
@@ -19188,7 +19228,9 @@ (define-public python-pyfaidx
python-mock
python-numpy
python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-wheel))
+ (propagated-inputs (list python-setuptools))
(home-page "http://mattshirley.com")
(synopsis "Random access to fasta subsequences")
(description
@@ -19310,7 +19352,7 @@ (define-public python-hicmatrix
python-scipy
python-tables))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/deeptools/HiCMatrix/")
(synopsis "HiCMatrix class for HiCExplorer and pyGenomeTracks")
(description
@@ -20173,6 +20215,7 @@ (define-public cnvkit
;; R packages
r-dnacopy))
(inputs (list r-minimal)) ;for tests
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://cnvkit.readthedocs.org/")
(synopsis "Copy number variant detection from targeted DNA sequencing")
(description
@@ -22474,7 +22517,9 @@ (define-public python-cgatcore
(list python-pytest
lsof
inetutils
- openssl))
+ openssl
+ python-setuptools
+ python-wheel))
(inputs (list time))
(propagated-inputs
(list python-apsw
@@ -22979,6 +23024,7 @@ (define-public python-dna-features-viewer
(list python-biopython
python-matplotlib
python-packaging))
+ (native-inputs (list python-setuptools python-wheel))
(home-page
"https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer")
(synopsis "Plot features from DNA sequences")
diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm
index 788c7dc9ef..0e27113155 100644
--- a/gnu/packages/bootloaders.scm
+++ b/gnu/packages/bootloaders.scm
@@ -76,6 +76,7 @@ (define-module (gnu packages bootloaders)
#:use-module (gnu packages version-control)
#:use-module (gnu packages virtualization)
#:use-module (gnu packages xorg)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (guix build-system gnu)
@@ -787,6 +788,8 @@ (define u-boot
pkg-config ;for 'make menuconfig'
python
python-pyelftools
+ python-setuptools
+ python-wheel
swig
(list util-linux "lib")))
(home-page "https://www.denx.de/wiki/U-Boot/")
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 41ea34249b..a8276d16b1 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -1041,7 +1041,7 @@ (define-public python-gixy
(base32
"0gymjcnvjx9snyrzdbmjnk93ibb161q72xam29vnl3yyac4r1330"))))
(build-system pyproject-build-system)
- (native-inputs (list python-nose))
+ (native-inputs (list python-nose python-setuptools python-wheel))
(propagated-inputs
(list python-cached-property python-configargparse
python-jinja2 python-six
@@ -2174,7 +2174,8 @@ (define-public python-pytest-forked
;; 'hypothesis' plugin is not in the environment (due to
;; <http://issues.guix.gnu.org/25235>), which would cause the test suite
;; to fail (see: https://github.com/pytest-dev/pytest-forked/issues/54).
- (list python-pytest-bootstrap python-setuptools-scm))
+ (list python-pytest-bootstrap python-setuptools
+ python-setuptools-scm python-wheel))
(home-page "https://github.com/pytest-dev/pytest-forked")
(synopsis "Pytest plugin to run tests in isolated forked subprocesses")
(description "This package provides a Pytest plugin which enables running
@@ -2499,7 +2500,7 @@ (define-public python-pytest-asyncio
(lambda _
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION"
#$(package-version this-package)))))))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools-scm python-setuptools python-wheel))
(propagated-inputs (list python-pytest))
(home-page "https://github.com/pytest-dev/pytest-asyncio")
(synopsis "Pytest support for asyncio")
@@ -2992,7 +2993,9 @@ (define-public python-pytest-mypy-plugins
python-mypy
python-pytest
python-pyyaml
+ python-setuptools
python-regex))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/TypedDjango/pytest-mypy-plugins")
(synopsis "Pytest plugin for writing tests for mypy plugins")
(description "This package provides a pytest plugin for writing tests for
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index dcd122cb22..b68f695513 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3229,6 +3229,7 @@ (define-public python-aiomysql
(build-system pyproject-build-system)
(arguments '(#:tests? #f)) ;test suite requires docker
(propagated-inputs (list python-pymysql))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/aio-libs/aiomysql")
(synopsis "MySQL driver for Python")
(description "@code{aiomysql} is a driver for accessing a MySQL database
@@ -3670,7 +3671,8 @@ (define-public python-sqlalchemy
(build-system pyproject-build-system)
(native-inputs
(list python-cython ; for C extensions
- python-pytest python-mock python-pytest-xdist)) ; for tests
+ python-pytest python-mock python-pytest-xdist ; for tests
+ python-setuptools python-wheel))
(propagated-inputs
(list python-greenlet))
(arguments
@@ -3905,7 +3907,7 @@ (define-public python-sqlite-utils
(propagated-inputs (list python-click python-click-default-group
python-dateutil python-sqlite-fts4
python-tabulate))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/simonw/sqlite-utils")
(synopsis
"CLI tool and Python utility functions for manipulating SQLite databases")
@@ -3978,7 +3980,7 @@ (define-public python-apsw
"10yfbasi4mq63g0svyl1h49ylwn9znjylq78id16dzxzk9q9ipdx"))))
(build-system pyproject-build-system)
(native-inputs
- (list unzip))
+ (list unzip python-setuptools python-wheel))
(inputs (list sqlite-next)) ;SQLite 3.45.1 required.
(arguments
(list
@@ -4333,7 +4335,7 @@ (define-public python-hiredis
;; The fix was forwarded upstream, see:
;; https://github.com/redis/hiredis-py/pull/160.
(delete-file "tests/__init__.py"))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(inputs (list hiredis))
(home-page "https://github.com/redis/hiredis-py")
(synopsis "Python extension that wraps protocol parsing code in hiredis")
@@ -4457,6 +4459,8 @@ (define-public python-redis
python-pytest
python-pytest-asyncio
python-pytest-timeout
+ python-setuptools
+ python-wheel
redis))
(propagated-inputs
(list python-async-timeout))
diff --git a/gnu/packages/digest.scm b/gnu/packages/digest.scm
index ae3bf8da75..8e91a9532a 100644
--- a/gnu/packages/digest.scm
+++ b/gnu/packages/digest.scm
@@ -116,7 +116,10 @@ (define-public python-xxhash
"1hdxcscry59gh0znlm71ya23mm9rfmvz8lvvlplzxzf63pib28dc"))))
(build-system pyproject-build-system)
;; Needed to embed the correct version string
- (native-inputs (list python-setuptools-scm))
+ (native-inputs
+ (list python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/ifduyue/python-xxhash")
(synopsis "Python binding for xxHash")
(description "This package provides Python bindings for the xxHash hash
diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index a67d83e57b..c829ece846 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -2669,9 +2669,14 @@ (define-public python-pyvisa
(substitute* "pyvisa/shell.py"
(("from .thirdparty import prettytable")
"import prettytable")))))))
- (native-inputs (list python-pytest))
- (propagated-inputs (list python-dataclasses python-prettytable
- python-typing-extensions))
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-dataclasses
+ python-prettytable
+ python-typing-extensions))
(home-page "https://pyvisa.readthedocs.io/en/latest/")
(synopsis "Python binding for the VISA library")
(description "PyVISA is a Python package for support of the
diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm
index 614d62f439..c7443fe1a1 100644
--- a/gnu/packages/fontutils.scm
+++ b/gnu/packages/fontutils.scm
@@ -532,7 +532,11 @@ (define-public python-ufo2ft
(sha256
(base32 "1rg2997af8blvswlwif0kpz2vxrlh555gzqslz6yv9y7i7v8lphl"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest python-setuptools-scm))
+ (native-inputs
+ (list python-pytest
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-booleanoperations
python-cffsubr
@@ -679,7 +683,8 @@ (define-public python-glyphslib
"--ignore=tests/builder/interpolation_test.py")))
(native-inputs
(list python-setuptools-scm
-
+ python-setuptools
+ python-wheel
;; For tests.
python-pytest
python-xmldiff))
@@ -859,6 +864,7 @@ (define-public psautohint
python-pytest-cov
python-pytest-xdist
python-setuptools-scm
+ python-setuptools
python-wheel))
(home-page "https://github.com/adobe-type-tools/psautohint")
(synopsis "Adobe's PostScript autohinter")
@@ -1782,8 +1788,13 @@ (define-public python-ufolib2
(base32 "0yx4i8q5rfyqhr2fj70a7z1bp1jv7bdlr64ww9z4nv9ycbda4x9j"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-setuptools-scm))
- (propagated-inputs (list python-attrs python-fonttools))
+ (list python-pytest
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-attrs
+ python-fonttools))
(home-page "https://github.com/fonttools/ufoLib2")
(synopsis "Unified Font Object (UFO) font processing library")
(description "The ufoLib2 Python library is meant to be a thin
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index a9a9e1c945..50decdd14a 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -359,7 +359,9 @@ (define-public python-h3
python-numpy
python-pytest
python-scikit-build
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(inputs (list h3))
(home-page "https://uber.github.io/h3-py")
(synopsis "Python bindings for H3")
@@ -1012,7 +1014,7 @@ (define-public python-geopandas
(list python-fiona python-packaging python-pandas python-pyproj
python-shapely))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://geopandas.org")
(synopsis "Geographic pandas extensions")
(description "The goal of GeoPandas is to make working with
@@ -1141,7 +1143,7 @@ (define-public python-osmnx
python-pandas
python-requests
python-shapely))
- (native-inputs (list python-hatchling python-pytest))
+ (native-inputs (list python-hatchling python-pytest python-setuptools python-wheel))
(home-page "https://github.com/gboeing/osmnx")
(synopsis
"Retrieve, model, analyze, and visualize OpenStreetMap street networks")
@@ -2109,7 +2111,7 @@ (define-public python-rtree
(string-append "\"" libspatialindex
"/lib/libspatialindex_c.so\"")))))))))
(native-inputs
- (list python-numpy python-pytest python-wheel))
+ (list python-numpy python-pytest python-setuptools python-wheel))
(inputs
(list libspatialindex))
(home-page "https://github.com/Toblerity/rtree")
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 02033c25b3..46e556ecc0 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -250,8 +250,12 @@ (define-public python-igraph
var (format #f "[~s]~%"
(string-append igraph "/lib")))))))))))
(inputs (list igraph))
- (propagated-inputs (list python-texttable))
- (native-inputs (list python-pytest))
+ (propagated-inputs
+ (list python-texttable))
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-wheel))
(home-page "https://igraph.org/python/")
(synopsis "Python bindings for the igraph network analysis library"))))
@@ -419,11 +423,12 @@ (define-public python-vtraag-louvain
(("self.use_pkgconfig = False")
"self.use_pkgconfig = True")))))))
(inputs (list igraph))
- (propagated-inputs (list python-igraph))
+ (propagated-inputs (list python-igraph python-setuptools))
(native-inputs
(list pkg-config
python-ddt
- python-setuptools-scm))
+ python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/vtraag/louvain")
(synopsis "Community detection in large networks")
(description
diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index a1626d3c58..b438c86b5c 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -160,7 +160,9 @@ (define-public python-graphviz
python-mock
python-pytest
python-pytest-cov
- python-pytest-mock))
+ python-pytest-mock
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/xflr6/graphviz")
(synopsis "Simple Python interface for Graphviz")
(description
diff --git a/gnu/packages/license.scm b/gnu/packages/license.scm
index b2216615b9..53a0b98f9a 100644
--- a/gnu/packages/license.scm
+++ b/gnu/packages/license.scm
@@ -191,12 +191,17 @@ (define-public reuse
(add-before 'check 'chdir
(lambda _
(chdir "/tmp"))))))
- (native-inputs (list python-poetry-core python-pytest))
- (inputs (list python-binaryornot
- python-boolean.py
- python-debian
- python-jinja2
- python-license-expression))
+ (native-inputs
+ (list python-poetry-core
+ python-pytest
+ python-wheel))
+ (inputs
+ (list python-binaryornot
+ python-boolean.py
+ python-debian
+ python-jinja2
+ python-license-expression
+ python-setuptools)) ; For pkg_resources.
(home-page "https://reuse.software/")
(synopsis "Provide and verify copyright and licensing information")
(description
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index a55d412a1e..9d76e719ed 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1047,7 +1047,7 @@ (define-public python-sacrebleu
python-portalocker
python-regex
python-tabulate))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/mjpost/sacrebleu")
(synopsis
"Compute shareable, comparable, and reproducible BLEU, chrF, and TER scores")
@@ -1088,7 +1088,7 @@ (define-public python-spacy-legacy
(build-system pyproject-build-system)
;; This package depends on spacy, which depends on this package.
(arguments (list #:tests? #false))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://spacy.io")
(synopsis "Legacy registered functions for spaCy backwards compatibility")
(description
@@ -1109,7 +1109,7 @@ (define-public python-spacy-loggers
(build-system pyproject-build-system)
;; This package depends on spacy, which depends on this package.
(arguments (list #:tests? #false))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/explosion/spacy-loggers")
(synopsis "Logging utilities for SpaCy")
(description "This package provides logging utilities for the SpaCy
@@ -1967,6 +1967,8 @@ (define-public python-imbalanced-learn
python-pandas
python-pytest
python-pytest-cov
+ python-setuptools
+ python-wheel
tensorflow))
(home-page "https://github.com/scikit-learn-contrib/imbalanced-learn")
(synopsis "Toolbox for imbalanced dataset in machine learning")
@@ -2147,7 +2149,9 @@ (define-public python-cleanlab
(list python-pytest
python-pytest-lazy-fixture
python-pytorch
- python-torchvision))
+ python-torchvision
+ python-setuptools
+ python-wheel))
(home-page "https://cleanlab.ai")
(synopsis "Automatically find and fix dataset issues")
(description
@@ -2179,7 +2183,7 @@ (define-public python-cleanlab-1
python-scipy
python-tqdm))
(native-inputs
- (list python-pytest))))
+ (list python-pytest python-setuptools python-wheel))))
(define-public python-cma
(package
@@ -2220,7 +2224,7 @@ (define-public python-cmaes
(base32 "17bk60mhkglz6s7wz6xcyhw1h4mvghc1iid0805dra7jdyafwrfn"))
(file-name (git-file-name name version))))
(build-system pyproject-build-system)
- (native-inputs (list python-hypothesis))
+ (native-inputs (list python-hypothesis python-setuptools python-wheel))
(propagated-inputs (list python-numpy))
(home-page "https://github.com/CyberAgentAILab/cmaes")
(synopsis "CMA-ES implementation for Python")
@@ -2386,13 +2390,15 @@ (define-public python-hyperopt
python-networkx
python-numpy
python-scipy
+ python-setuptools ; For pkg_resources.
python-six
python-tqdm))
(native-inputs
(list python-black
python-nose
python-pymongo
- python-pytest))
+ python-pytest
+ python-wheel))
(home-page "https://hyperopt.github.io/hyperopt/")
(synopsis "Library for hyperparameter optimization")
(description "Hyperopt is a Python library for serial and parallel
@@ -3962,7 +3968,8 @@ (define-public python-tensorly
;; nor is examples/plot_quantum.py
" and not test_file_is_generated"))))
(propagated-inputs (list python-jsmin python-numpy python-scipy))
- (native-inputs (list python-pytest python-pytest-cov python-sphinx))
+ (native-inputs (list python-pytest python-pytest-cov python-sphinx
+ python-setuptools python-wheel))
(home-page "https://github.com/tensorly/tensorly")
(synopsis "Tensor learning in Python")
(description
@@ -5123,6 +5130,7 @@ (define-public python-readchar
(lambda _
(delete-file "readchar/_win_read.py"))))))
(propagated-inputs (list python-setuptools))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/magmax/python-readchar")
(synopsis "Library to easily read single chars and key strokes")
(description "This package provides a Python library to easily read single
@@ -5391,7 +5399,7 @@ (define-public python-torchvision
python-pillow-simd
python-pytorch))
(native-inputs
- (list which python-pytest))
+ (list which python-pytest python-setuptools python-wheel))
(home-page "https://pytorch.org/vision/stable/index.html")
(synopsis "Datasets, transforms and models specific to computer vision")
(description
@@ -5994,7 +6002,7 @@ (define-public python-brian2
;; Required by codegen.
python-setuptools
python-sympy))
- (native-inputs (list python-pytest python-pytest-xdist))
+ (native-inputs (list python-pytest python-pytest-xdist python-wheel))
(home-page "https://briansimulator.org/")
(synopsis "Clock-driven simulator for spiking neural networks")
(description
diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm
index 6325c9b96f..d6fab3f32c 100644
--- a/gnu/packages/monitoring.scm
+++ b/gnu/packages/monitoring.scm
@@ -326,7 +326,10 @@ (define-public zabbix-cli
(string-append #$output "/share/doc/"
#$name "/html")))))))
(native-inputs
- (list python-pytest python-sphinx))
+ (list python-pytest
+ python-setuptools
+ python-sphinx
+ python-wheel))
(inputs
(list ncurses python-requests))
(home-page "https://github.com/unioslo/zabbix-cli")
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index 8b4c408874..97c0bb675d 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -1090,7 +1090,11 @@ (define-public python-anaconda-client
(add-before 'check 'set-HOME
(lambda _ (setenv "HOME" "/tmp"))))))
(propagated-inputs
- (list python-clyent python-nbformat python-pyyaml python-requests))
+ (list python-clyent
+ python-nbformat
+ python-pyyaml
+ python-requests
+ python-setuptools))
(native-inputs
(list python-coverage
python-dateutil
@@ -1098,7 +1102,8 @@ (define-public python-anaconda-client
python-mock
python-pillow
python-pytest
- python-pytz))
+ python-pytz
+ python-wheel))
(home-page "https://github.com/Anaconda-Platform/anaconda-client")
(synopsis "Anaconda Cloud command line client library")
(description
diff --git a/gnu/packages/potassco.scm b/gnu/packages/potassco.scm
index c5d00c9b1c..e08b478c22 100644
--- a/gnu/packages/potassco.scm
+++ b/gnu/packages/potassco.scm
@@ -589,7 +589,7 @@ (define-public python-clorm
(setenv "CLORM_NOCLINGO" "1")
(delete-file "tests/test_mypy_query.py"))))))
(propagated-inputs (list python-clingo))
- (native-inputs (list python-typing-extensions))
+ (native-inputs (list python-typing-extensions python-setuptools python-wheel))
(home-page "https://potassco.org")
(synopsis "Object relational mapping to clingo")
(description "@acronym{Clorm, Clingo ORM} provides an @acronym{ORM,
@@ -651,6 +651,7 @@ (define-public python-telingo
"1q6hlh4b5hsa4n5agvmfa9rhsxfd2g6kpl4b9kfccwbmf6dh51k6"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-clingo))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://potassco.org/")
(synopsis "Solve dynamic temporal logic programs")
(description "This package provides a system to solve dynamic temporal
@@ -678,8 +679,10 @@ (define-public python-clingraph
python-imageio
python-jinja2
python-jsonschema
- python-networkx))
- (native-inputs (list dot2tex graphviz python-pylint python-pytest))
+ python-networkx
+ python-setuptools))
+ (native-inputs (list dot2tex graphviz python-pylint python-pytest
+ python-wheel))
(home-page "https://github.com/potassco/clingraph")
(synopsis "Visualizer for graphs defined as logic programs")
(description
diff --git a/gnu/packages/protobuf.scm b/gnu/packages/protobuf.scm
index 59f49c8cf4..11e81527e0 100644
--- a/gnu/packages/protobuf.scm
+++ b/gnu/packages/protobuf.scm
@@ -395,7 +395,9 @@ (define-public python-mypy-protobuf
(list python-grpc-stubs
python-grpcio-tools
python-pytest
- python-typing-extensions))
+ python-typing-extensions
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list protobuf
python-protobuf
diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm
index 47c9c5a9ff..d236822007 100644
--- a/gnu/packages/python-build.scm
+++ b/gnu/packages/python-build.scm
@@ -219,7 +219,7 @@ (define-public python-trove-classifiers
(build-system pyproject-build-system)
(arguments (list #:build-backend "setuptools.build_meta"
#:tests? #f)) ;keep dependencies to a minimum
- (native-inputs (list python-wheel))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/pypa/trove-classifiers")
(synopsis "Canonical source for classifiers on PyPI")
(description "This package is the canonical source for classifiers use on
@@ -650,6 +650,7 @@ (define-public python-flit-scm
;; builder instead.
#:build-backend "setuptools.build_meta"))
(propagated-inputs (list python-flit-core python-setuptools-scm python-tomli))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://gitlab.com/WillDaSilva/flit_scm")
(synopsis "PEP 518 build backend combining flit_core and setuptools_scm")
(description "This package provides a PEP 518 build backend that uses
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 8599d8bf1d..3d8fe98bd4 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -792,8 +792,13 @@ (define-public python-pytest-doctestplus
;; Requiring git available.
" and not test_generate_diff_basic"))))
(native-inputs
- (list python-numpy python-pytest python-setuptools-scm))
- (home-page "https://github.com/scientific-python/pytest-doctestplus")
+ (list python-numpy
+ python-pytest
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-setuptools)) ;for pkg_resources
+ (home-page "https://github.com/astropy/pytest-doctestplus")
(synopsis "Pytest plugin with advanced doctest features")
(description
"This package contains a plugin for the Pytest framework that provides
@@ -842,7 +847,9 @@ (define-public python-pytest-filter-subpackage
(list python-pytest
python-pytest-cov
python-pytest-doctestplus
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/astropy/pytest-filter-subpackage")
(synopsis "Pytest plugin for filtering based on sub-packages")
(description
@@ -947,7 +954,10 @@ (define-public python-pytest-remotedata
"not test_default_behavior"
" and not test_strict_with_decorator"))))
(native-inputs
- (list python-pytest python-setuptools-scm))
+ (list python-pytest
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-packaging))
(home-page "https://github.com/astropy/pytest-remotedata")
@@ -1042,6 +1052,7 @@ (define-public python-pytest-mpl
#:test-flags #~(list "-m" "mpl_image_compare")))
(native-inputs
(list python-pytest
+ python-setuptools
python-setuptools-scm
python-wheel))
(propagated-inputs
@@ -2075,7 +2086,11 @@ (define-public python-memory-profiler
(("def test_memory_profiler")
"def __off_test_memory_profiler")))))))
(native-inputs
- (list python-pytest python-pytest-fixture-config python-safety))
+ (list python-pytest
+ python-pytest-fixture-config
+ python-safety
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-psutil))
(home-page "https://github.com/pythonprofilers/memory_profiler")
(synopsis "Memory profiler for Python")
@@ -2532,7 +2547,7 @@ (define-public python-aioresponses
(native-inputs
(list python-pbr python-ddt python-pytest))
(propagated-inputs
- (list python-aiohttp))
+ (list python-aiohttp python-setuptools))
(home-page "https://github.com/pnuckowski/aioresponses")
(synopsis "Mock out requests made by ClientSession from aiohttp package")
(description
@@ -2780,7 +2795,9 @@ (define-public python-nox
(native-inputs
(list python-jinja2
python-pytest
- python-tox))
+ python-tox
+ python-setuptools
+ python-wheel))
(home-page "https://nox.thea.codes/")
(synopsis "Flexible test automation")
(description
@@ -2933,8 +2950,12 @@ (define-public python-pytest-httpx
(sha256
(base32 "1ncpd74hmsz4sadvjg99fnfscxpgh3mc2siini0dhxzwgwdkk5i7"))))
(build-system pyproject-build-system)
+ (native-inputs
+ (list python-pytest
+ python-pytest-asyncio
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-httpx))
- (native-inputs (list python-pytest python-pytest-asyncio))
(home-page "https://colin-b.github.io/pytest_httpx/")
(synopsis "Pytest plugin to mock httpx")
(description "This package provides a pytest fixture to mock httpx
@@ -3011,7 +3032,11 @@ (define-public python-vulture
;; skip test that uses python-pint
;; pint has many dependencies
"not test_whitelists_with_python")))))))
- (native-inputs (list python-pytest python-pytest-cov))
+ (native-inputs
+ (list python-pytest
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-toml))
(home-page "https://github.com/jendrikseipp/vulture")
(synopsis "Find dead Python code")
diff --git a/gnu/packages/python-compression.scm b/gnu/packages/python-compression.scm
index 5a6383facc..3c15b1b682 100644
--- a/gnu/packages/python-compression.scm
+++ b/gnu/packages/python-compression.scm
@@ -114,7 +114,9 @@ (define-public python-multivolumefile
python-hypothesis
python-pyannotate
python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/miurahr/multivolume")
(synopsis "Treat multiple files as one")
(description "MultiVolumefile is a Python library that provides a
@@ -251,7 +253,9 @@ (define-public python-pybcj
python-hypothesis
python-pytest
python-pytest-cov
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://codeberg.org/miurahr/pybcj")
(synopsis "BCJ filter library")
(description "In data compression, BCJ, short for Branch-Call-Jump, refers
@@ -311,6 +315,7 @@ (define-public python-brotlicffi
(setenv "USE_SHARED_BROTLI" "1"))))))
(propagated-inputs (list python-cffi))
(inputs (list brotli))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/python-hyper/brotlicffi")
(synopsis "Python CFFI bindings to the Brotli library")
(description "This package provides Python CFFI bindings to the Brotli
@@ -332,7 +337,9 @@ (define-public python-inflate64
(native-inputs
(list python-pyannotate
python-pytest
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://pypi.org/project/inflate64/")
(synopsis "Compression/decompression library")
(description "The @code{inflate64} package provides @code{Deflater} and
@@ -361,7 +368,7 @@ (define-public python-isal
(add-after 'unpack 'use-dynamic-linking
(lambda _ (setenv "PYTHON_ISAL_LINK_DYNAMIC" "1"))))))
(inputs (list isa-l))
- (native-inputs (list python-cython))
+ (native-inputs (list python-cython python-setuptools python-wheel))
(home-page "https://github.com/pycompression/python-isal")
(synopsis "Python bindings for the ISA-L compression library")
(description
@@ -407,7 +414,9 @@ (define-public python-pyppmd
python-pytest-benchmark
python-pytest-cov
python-pytest-timeout
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/miurahr/pyppmd")
(synopsis "PPMd compression/decompression library")
(description "Pyppmd provides classes and functions for compressing and
@@ -468,9 +477,8 @@ (define-public python-py7zr
python-pyzstd
python-texttable))
(native-inputs
- (list python-setuptools
- python-setuptools-scm
- python-coverage
+ (list python-coverage
+ python-setuptools
python-coveralls
python-libarchive-c
python-py-cpuinfo
@@ -479,7 +487,9 @@ (define-public python-py7zr
python-pytest-benchmark
python-pytest-cov
python-pytest-remotedata
- python-pytest-timeout))
+ python-pytest-timeout
+ python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/miurahr/py7zr")
(synopsis "7-zip in Python")
(description "This package provides py7zr, which implements 7-zip
diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm
index 19df7ef3a9..99c7eb5881 100644
--- a/gnu/packages/python-crypto.scm
+++ b/gnu/packages/python-crypto.scm
@@ -302,7 +302,9 @@ (define-public python-keyring
(native-inputs
(list python-toml
python-pytest
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-importlib-metadata
python-jaraco-classes
@@ -530,11 +532,13 @@ (define-public python-cryptography-vectors
(build-system pyproject-build-system)
(arguments (list #:tests? #f)) ; No tests included.
(native-inputs
- (list python-flit-core))
+ (list python-flit-core
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/pyca/cryptography")
(synopsis "Test vectors for the cryptography package")
(description
- "This package contains test vectors for the cryptography package.")
+ "This package contains test vectors for the cryptography package.")
;; Distributed under either BSD-3 or ASL2.0
(license (list license:bsd-3 license:asl2.0))))
@@ -574,7 +578,10 @@ (define-public python-cryptography
python-iso8601
python-pretend
python-pytest ;for subtests
- python-pytest-benchmark))
+ python-pytest-benchmark
+ python-pytest-subtests
+ python-setuptools
+ python-wheel))
(inputs (list python-cryptography-rust))
(propagated-inputs (list python-cffi))
(home-page "https://github.com/pyca/cryptography")
@@ -1093,7 +1100,7 @@ (define-public python-m2crypto
;; certificates.
#:tests? #f))
(inputs (list openssl))
- (native-inputs (list swig))
+ (native-inputs (list swig python-setuptools python-wheel))
(home-page "https://gitlab.com/m2crypto/m2crypto")
(synopsis "Python crypto and TLS toolkit")
(description "@code{M2Crypto} is a complete Python wrapper for OpenSSL
@@ -1280,7 +1287,11 @@ (define-public python-service-identity
(base32
"0d4x84crbz0a17d8gi90z6zlxwm9pslc65rx0cdw2797ra360v3f"))))
(build-system pyproject-build-system)
- (native-inputs (list python-idna python-pytest))
+ (native-inputs
+ (list python-idna
+ python-pytest
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-attrs python-cryptography python-pyasn1
python-pyasn1-modules python-six))
(home-page "https://service-identity.readthedocs.io/")
@@ -1511,6 +1522,8 @@ (define-public python-trustme
python-pytest
python-pytest-cov
python-service-identity
+ python-setuptools
+ python-wheel
python-zipp))
(propagated-inputs
(list python-cryptography
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index cd2434c39f..58d00966e3 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -370,9 +370,12 @@ (define-public python-scikit-allel
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
(propagated-inputs
(list python-dask
- python-numpy))
+ python-numpy
+ python-click))
(native-inputs
(list python-cython
+ python-setuptools
+ python-wheel
;; The following are all needed for the tests
htslib
python-h5py
@@ -591,7 +594,7 @@ (define-public python-scikit-optimize
python-scikit-learn
python-scipy))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://scikit-optimize.github.io/")
(synopsis "Sequential model-based optimization toolbox")
(description "Scikit-Optimize, or @code{skopt}, is a simple and efficient
@@ -1852,7 +1855,7 @@ (define-public python-xarray
(string-append "not test_datetime_conversion_warning"
" and not test_timedelta_conversion_warning"))))
(native-inputs
- (list python-setuptools-scm python-pytest))
+ (list python-setuptools python-setuptools-scm python-pytest python-wheel))
(propagated-inputs
(list python-numpy python-packaging python-pandas))
(home-page "https://github.com/pydata/xarray")
@@ -2019,7 +2022,9 @@ (define-public python-pytensor
(native-inputs (list python-cython
python-pytest
python-pytest-mock
- python-versioneer))
+ python-versioneer
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-cons
python-etuples
python-filelock
@@ -2882,7 +2887,9 @@ (define-public python-plotnine
python-pandas
python-pytest
python-pytest-cov
+ python-setuptools
python-setuptools-scm
+ python-wheel
tzdata-for-tests))
(home-page "https://github.com/has2k1/plotnine")
(synopsis "Grammar of Graphics for Python")
@@ -3666,7 +3673,12 @@ (define-public python-libneuroml
"0mrm4rd6x1sm6hkvhk20mkqp9q53sl3lbvq6hqzyymkw1iqq6bhy"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-lxml python-six))
- (native-inputs (list python-pytest python-numpy python-tables))
+ (native-inputs
+ (list python-pytest
+ python-numpy
+ python-setuptools
+ python-tables
+ python-wheel))
(home-page "https://libneuroml.readthedocs.org/en/latest/")
(synopsis
"Python library for working with NeuroML descriptions of neuronal models")
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 0d023fe58d..3be51c3299 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -444,7 +444,12 @@ (define-public python-aiosignal
(build-system pyproject-build-system)
(arguments (list #:test-flags #~(list "tests")))
(propagated-inputs (list python-frozenlist))
- (native-inputs (list python-pytest python-pytest-asyncio python-pytest-cov))
+ (native-inputs
+ (list python-pytest
+ python-pytest-asyncio
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/aio-libs/aiosignal")
(synopsis "Callback manager for Python @code{asyncio} projects")
(description "This Python module provides @code{Signal}, an abstraction to
@@ -765,7 +770,9 @@ (define-public python-asgi-csrf
python-httpx
python-pytest
python-pytest-asyncio
- python-starlette))
+ python-starlette
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/simonw/asgi-csrf")
(synopsis "ASGI middleware for protecting against CSRF attacks")
(description "This Asynchronous Server Gateway Interface (ASGI)
@@ -806,7 +813,9 @@ (define-public python-asgi-lifespan
(native-inputs (list python-pytest
python-pytest-asyncio
python-pytest-trio
- python-starlette))
+ python-starlette
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-sniffio))
(home-page "https://github.com/florimondmanca/asgi-lifespan")
(synopsis "Programmatic startup/shutdown of ASGI apps")
@@ -970,7 +979,9 @@ (define-public python-aws-xray-sdk
python-pytest-benchmark
python-requests
python-sqlalchemy
- python-webtest))
+ python-webtest
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-aiohttp
python-botocore
@@ -1310,7 +1321,9 @@ (define-public python-httplib2
python-pytest-randomly
python-pytest-timeout
python-pytest-xdist
- python-six))
+ python-six
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/httplib2/httplib2")
(synopsis "Comprehensive HTTP client library")
(description
@@ -1706,7 +1719,7 @@ (define-public python-h11
(base32 "17b97c56y31hi0n0x0cb5a87x4xr9jijf2y06pzj0977k6zgn6cg"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/python-hyper/h11")
(synopsis "Pure-Python, bring-your-own-I/O implementation of HTTP/1.1")
(description
@@ -2165,7 +2178,9 @@ (define-public python-omnipath
python-pytest-socket
python-requests-mock
python-setuptools-scm
- python-tox))
+ python-tox
+ python-setuptools
+ python-wheel))
(home-page "https://omnipathdb.org/")
(synopsis "Python client for the OmniPath web service")
(description "This package provides a Python client for the OmniPath web
@@ -2195,7 +2210,7 @@ (define-public python-openai
(propagated-inputs (list python-aiohttp python-requests python-tqdm
python-typing-extensions))
(native-inputs (list python-black python-pytest python-pytest-asyncio
- python-pytest-mock))
+ python-pytest-mock python-setuptools python-wheel))
(home-page "https://github.com/openai/openai-python")
(synopsis "Python client library for the OpenAI API")
(description "This package provides a Python client library for the
@@ -2400,7 +2415,7 @@ (define-public python-cssutils
"and not encutils "
"and not website.logging")))))))
(native-inputs
- (list python-pytest python-jaraco-test))
+ (list python-pytest python-jaraco-test python-setuptools python-wheel))
(home-page "https://github.com/jaraco/cssutils")
(synopsis
"CSS Cascading Style Sheets library for Python")
@@ -2578,7 +2593,7 @@ (define-public python-wsproto
(base32 "0rahm1j9danv1l6i6as80acwv16ycihxkhrvwjiqh9drxhk5ymmd"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-h11))
(home-page "https://github.com/python-hyper/wsproto/")
@@ -4503,7 +4518,7 @@ (define-public python-flask-compress
"178jzz6jxlxllcjqamzh5q7ahfh90m5cl1il9vmjs3xhz65z35pf"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-brotli python-flask))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools-scm python-setuptools python-wheel))
(home-page "https://github.com/colour-science/flask-compress")
(synopsis "Compress responses in a Flask app")
(description
@@ -4526,6 +4541,7 @@ (define-public python-flask-seasurf
(arguments
(list #:tests? #false)) ;there are none
(propagated-inputs (list python-flask))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/maxcountryman/flask-seasurf/")
(synopsis "CSRF extension for Flask")
(description "SeaSurf is a Flask extension for preventing cross-site
@@ -4961,7 +4977,7 @@ (define-public python-flask-jwt
"flask_jwt/__init__.py")
(("access_token.decode\\('utf-8'\\)") "access_token")))))))
(propagated-inputs (list python-flask python-pyjwt))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/mattupstate/flask-jwt")
(synopsis "JWT token authentication for Flask apps")
(description "This package implements JWT token authentication for Flask
@@ -4988,7 +5004,9 @@ (define-public python-flask-restful
(native-inputs
(list python-blinker
python-mock
- python-pytest))
+ python-pytest
+ python-setuptools
+ python-wheel))
(home-page "https://www.github.com/flask-restful/flask-restful/")
(synopsis "Flask module for creating REST APIs")
(description
@@ -5654,9 +5672,9 @@ (define-public python-paste
(delete-file "tests/test_proxy.py") #t))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-nose))
+ (list python-pytest python-wheel))
(propagated-inputs
- (list python-six))
+ (list python-six python-setuptools))
(home-page "https://pythonpaste.readthedocs.io/")
(synopsis
"Python web development tools, focusing on WSGI")
@@ -5929,6 +5947,7 @@ (define-public whoogle-search
python-stem
python-validators
python-waitress))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/benbusby/whoogle-search")
(synopsis "Self-hosted, ad-free, privacy-respecting metasearch engine")
(description
@@ -6026,7 +6045,7 @@ (define-public python-hyperlink
;; Pretend to be a CI system to skip flaky tests.
(setenv "CI" "true"))))))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-idna))
(home-page "https://github.com/python-hyper/hyperlink")
@@ -6810,7 +6829,9 @@ (define-public python-httpcore
python-pytest-httpbin
python-pytest-trio
python-uvicorn
- python-trustme))
+ python-setuptools
+ python-trustme
+ python-wheel))
(propagated-inputs
(list python-anyio
python-certifi
@@ -6844,7 +6865,7 @@ (define-public python-httpcore-bootstrap
(package/inherit python-httpcore
(name "python-httpcore-bootstrap")
(arguments (list #:tests? #f))
- (native-inputs '()))))
+ (native-inputs (list python-setuptools python-wheel)))))
(define-public python-httpx
(package
@@ -6889,7 +6910,9 @@ (define-public python-httpx
python-trio
python-trio-typing
python-trustme
- python-uvicorn))
+ python-uvicorn
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-charset-normalizer
python-brotli
@@ -7121,7 +7144,7 @@ (define-public python-rapidjson
"/include/rapidjson" "'"))
(("if not os.path.isdir.*") "if False:")))))))
(native-inputs
- (list rapidjson python-pytest python-pytz))
+ (list rapidjson python-pytest python-pytz python-setuptools python-wheel))
(home-page "https://github.com/python-rapidjson/python-rapidjson")
(synopsis "Python wrapper around rapidjson")
(description "This package provides a python wrapper around rapidjson.")
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 3a63c4ef80..2726725707 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -514,7 +514,8 @@ (define-public python-janus
(base32 "04hnrdcf03g1s0x3sr72sh9gnszz6kyfsl9dg8a4n0zvvhn6z5yz"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-pytest-cov python-pytest-asyncio))
+ (list python-pytest python-pytest-cov python-pytest-asyncio
+ python-setuptools python-wheel))
(propagated-inputs (list python-typing-extensions))
(home-page "https://github.com/aio-libs/janus/")
(synopsis
@@ -977,6 +978,7 @@ (define-public python-fit-nbinom
(substitute* "setup.py"
((".\\*\"") "\"")))))))
(propagated-inputs (list python-numpy python-scipy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/joachimwolff/fit_nbinom")
(synopsis "Negative binomial maximum likelihood estimator")
(description "This package provides an implementation in Python using
@@ -995,7 +997,8 @@ (define-public python-docrep
"0523jrzjj29kxpdllmfhrfj9kysi9mphp2m7ippjkn5b07i1g2pd"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-six))
- (native-inputs (list python-pytest python-pytest-runner))
+ (native-inputs (list python-pytest python-pytest-runner
+ python-setuptools python-wheel))
(home-page "https://github.com/Chilipp/docrep")
(synopsis "Python package for docstring repetition")
(description "Docrep is the documentation repetition module. This module
@@ -1073,6 +1076,7 @@ (define-public python-adjusttext
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
(propagated-inputs (list python-matplotlib python-numpy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/Phlya/adjustText")
(synopsis "Adjust text position in matplotlib plots to minimize overlaps")
(description
@@ -1234,6 +1238,7 @@ (define-public python-colored
"196ins0m7f90xz5dw764dlx060ziqbcydqzzq40b4ir5858baf3r"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;the tests are not run automatically
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://gitlab.com/dslackw/colored")
(synopsis "Simple library for color and formatting to terminal")
(description "This is a very simple Python library for color and
@@ -1256,7 +1261,8 @@ (define-public python-colorful
(base32 "0kyy9qhvrb5m9h8xmri7c88i0k1g5qc7017anw39gx44an7mn33y"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-coverage python-flake8 python-pytest))
+ (list python-coverage python-flake8 python-pytest python-setuptools
+ python-wheel))
(propagated-inputs
(list python-colorama))
(home-page "http://github.com/timofurrer/colorful")
@@ -1697,7 +1703,8 @@ (define-public python-pdoc
(base32
"0gxkw607nrd67ck4w8jri9vfrm5g60qvp8b134m8zkiphbxjnx0l"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest python-jinja2 python-pygments))
+ (native-inputs (list python-pytest python-jinja2 python-pygments
+ python-setuptools python-wheel))
(arguments
(list
;; Some tests fail, presumably because of slight version mismatches of
@@ -1804,6 +1811,7 @@ (define-public python-plotext
"1gpy1z2i4vq1mcrhysxahz4339pbl9rzk58rf5m5gf5ym9xji6ii"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/piccolomo/plotext")
(synopsis "Plots in the terminal")
(description "Plotext lets you plot directly to the terminal.")
@@ -1998,6 +2006,8 @@ (define-public python-skranger
python-matplotlib
python-pandas
python-poetry-core
+ python-setuptools
+ python-wheel
python-pytest))
(home-page "https://github.com/crflynn/skranger")
(synopsis "Python bindings for C++ ranger random forests")
@@ -2165,7 +2175,7 @@ (define-public python-tenacity
(build-system pyproject-build-system)
(native-inputs
(list python-setuptools-scm python-tornado-6 python-typeguard
- python-pytest))
+ python-pytest python-setuptools python-wheel))
(home-page "https://github.com/jd/tenacity")
(synopsis "Retrying library for python")
(description "Tenacity is a general-purpose python library to simplify the
@@ -2650,7 +2660,7 @@ (define-public python-rasterio
python-click-plugins
python-cligj
python-numpy
- python-setuptools
+ python-setuptools ; For pkg_resources.
python-snuggs))
(native-inputs (list gdal
python-boto3
@@ -2659,7 +2669,8 @@ (define-public python-rasterio
python-packaging
python-pytest
python-pytest-cov
- python-shapely))
+ python-shapely
+ python-wheel))
(home-page "https://github.com/rasterio/rasterio")
(synopsis "Fast and direct raster I/O for use with Numpy and SciPy")
(description "This package implements fast and direct raster I/O for use
@@ -2686,7 +2697,7 @@ (define-public python-shapely
;; Cython extensions have to be built before running the tests.
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
(native-inputs
- (list python-cython python-matplotlib python-pytest))
+ (list python-cython python-matplotlib python-pytest python-setuptools python-wheel))
(inputs
(list geos))
(propagated-inputs
@@ -2972,7 +2983,9 @@ (define-public python-h5netcdf
(native-inputs
(list python-netcdf4
python-pytest
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-h5py python-packaging))
(home-page "https://h5netcdf.org")
@@ -3314,7 +3327,7 @@ (define-public python-license-expression
(base32 "0lvshl2fhwa568d3y3vmx45hdp8gk5w9yl3b2q5d66r5vqn1sfwl"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-setuptools-scm python-pytest))
+ (list python-setuptools-scm python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-boolean.py))
(home-page "https://github.com/nexB/license-expression")
@@ -3436,7 +3449,8 @@ (define-public python-filelock-3.5
(base32
"058av1r760ws7z6qffsjpqa39fmdxw0s1wnyr7p50y3zclg6cyqk"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest python-setuptools-scm))
+ (native-inputs (list python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/tox-dev/py-filelock")
(synopsis "Platform independent file lock")
(description "@code{filelock} contains a single module implementing
@@ -3720,7 +3734,8 @@ (define-public python-can
;; These tests fail with "OSError: [Errno 19] No such device".
"-k" "not BasicTestUdpMulticastBusIPv")))
(propagated-inputs
- (list python-msgpack python-typing-extensions python-wrapt))
+ (list python-msgpack python-typing-extensions python-wrapt
+ python-setuptools))
(native-inputs
(list ;; python-canalystii ; Not packed yet
python-codecov
@@ -3733,7 +3748,8 @@ (define-public python-can
python-pytest
python-pytest-cov
python-pytest-runner
- python-pytest-timeout))
+ python-pytest-timeout
+ python-wheel))
(home-page "https://github.com/hardbyte/python-can")
(synopsis "Controller Area Network (CAN) interface module for Python")
(description "This package defines the @code{can} module, which provides
@@ -3868,6 +3884,7 @@ (define-public python-optparse-pretty
(base32 "1920wbh2b7a8qn7zx2iiqbcdaax335l81a73x9pp8h11yzs2jdmh"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;There are none
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/gvalkov/optparse-pretty")
(synopsis "Compact help formatter for optparse")
(description
@@ -4078,6 +4095,7 @@ (define-public python-fastprogress
;; XXX: Fails with: "In procedure utime: No such file
;; or directory".
(delete 'ensure-no-mtimes-pre-1980))))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/fastai/fastprogress")
(synopsis "Progress bar for Jupyter Notebook and console")
(description
@@ -4311,6 +4329,8 @@ (define-public python-omero-py
python-pytest
python-pytest-rerunfailures
python-pytest-xdist
+ python-setuptools
+ python-wheel
unzip
(origin
(method url-fetch)
@@ -4673,7 +4693,9 @@ (define-public python-jsonargparse
python-pytest-subtests
python-responses
python-tox
- python-types-requests))
+ python-types-requests
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/omni-us/jsonargparse/")
(synopsis "Implement minimal boilerplate CLIs derived from type hints")
(description
@@ -4902,7 +4924,7 @@ (define-public python-palettable
(base32
"1a4h0jpsr3wjciqg9a5kslxv65d3qqgmqgkpai4cl77wlpcxfk89"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://jiffyclub.github.io/palettable/")
(synopsis "Color palettes for Python")
(description "Palettable (formerly brewer2mpl) is a library of color
@@ -4983,7 +5005,8 @@ (define-public python-parsley
(string-append "not test_sending_empty_netstring"
" and not test_sending_one_netstring"
" and not test_sending_two_netstrings"))))
- (native-inputs (list python-pytest python-twisted))
+ (native-inputs (list python-pytest python-twisted python-setuptools
+ python-wheel))
(home-page "https://launchpad.net/parsley")
(synopsis "Parsing and pattern matching Python library")
(description
@@ -5134,7 +5157,9 @@ (define-public python-portalocker
python-pytest-cov
python-pytest-mypy
python-pytest-timeout
- python-redis))
+ python-redis
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/WoLpH/portalocker")
(synopsis "Python library for file locking")
(description "Portalocker is a library to provide an easy API to file
@@ -5242,14 +5267,16 @@ (define-public python-extension-helpers
python-pytest-astropy
python-pytest-cov
python-setuptools-scm
- python-tomli))
+ python-tomli
+ python-setuptools
+ python-wheel))
(home-page "https://extension-helpers.readthedocs.io")
(synopsis "Astropy ecosystem utilities for building and installing packages")
(description
- "The extension-helpers package includes convenience helpers to assist with
-building Python packages with compiled C/Cython extensions. It is developed by
-the Astropy project but is intended to be general and usable by any Python
-package.")
+ "The extension-helpers package includes convenience helpers to assist
+with building Python packages with compiled C/Cython extensions. It is
+developed by the Astropy project but is intended to be general and usable by
+any Python package.")
(license license:bsd-3)))
(define-public python-extras
@@ -5737,12 +5764,14 @@ (define-public python-clickhouse-connect
python-orjson
python-pandas
python-pytz
+ python-setuptools ; For pkg_resources.
python-sqlalchemy
python-urllib3
python-zstandard))
(native-inputs
(list python-cython
- python-pytest))
+ python-pytest
+ python-wheel))
(home-page "https://github.com/ClickHouse/clickhouse-connect")
(synopsis
"ClickHouse database core driver for Python, Pandas, and Superset")
@@ -5787,7 +5816,7 @@ (define-public python-cloup
"05c6cjpnf9s72gyn5dckxbmd8rf2kgdzfsl7pqzrnc1lcdl13zmv"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-click))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/janLuke/cloup")
(synopsis "Extension library for python-click")
(description
@@ -5915,7 +5944,8 @@ (define-public python-jsonschema
(when tests?
(setenv "JSON_SCHEMA_TEST_SUITE" "json")
(invoke "trial" "jsonschema")))))))
- (native-inputs (list python-setuptools-scm python-twisted))
+ (native-inputs (list python-setuptools-scm python-twisted
+ python-setuptools python-wheel))
(propagated-inputs
(list python-attrs
python-importlib-metadata
@@ -6118,7 +6148,9 @@ (define-public python-pyjwt
python-cryptography
python-pytest
python-sphinx
- python-sphinx-rtd-theme))
+ python-sphinx-rtd-theme
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/progrium/pyjwt")
(synopsis "JSON Web Token implementation in Python")
(description
@@ -6366,7 +6398,7 @@ (define-public python-uc-micro-py
(base32
"17f55gi55rg47nm88fn3f8851ph03dgykdp011lxr3j6hk18lyfv"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/tsutsu3/uc.micro-py")
(synopsis "Unicode data files for linkify-it-py projects")
(description "This package contains a micro subset of Unicode data files
@@ -6388,7 +6420,7 @@ (define-public python-linkify-it-py
"0fg0a1lc8xbb62y9krxcp708ll58dxcwm8i7rrwpkd5sh2229f6x"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-uc-micro-py))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/tsutsu3/linkify-it-py")
(synopsis "Links recognition library with full Unicode support")
(description "This is Python port of
@@ -6413,7 +6445,7 @@ (define-public python-makefun
"19a8dga8rnmjn5gy1cy1wdi28swbkdkypwbqikbxil6ynqcg3c20"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-setuptools-scm))
+ (list python-pytest python-setuptools python-setuptools-scm python-wheel))
(home-page "https://github.com/smarie/python-makefun")
(synopsis "Library to dynamically create python functions")
(description "@code{makefun} helps create functions dynamically with a
@@ -7091,8 +7123,8 @@ (define-public python-docx
(list behave
python-pyparsing
python-pytest
- python-pytest-cov
- python-pytest-xdist))
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-lxml python-typing-extensions))
(home-page "https://github.com/python-openxml/python-docx/")
@@ -7235,7 +7267,7 @@ (define-public python-pygments
;; basic tests.
'(list "--ignore-glob=tests/*/*")))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://pygments.org/")
(synopsis "Syntax highlighting")
(description
@@ -7290,6 +7322,7 @@ (define-public python-pygtrie
(base32
"1qm4xdmzd4q5pc9h5gjdpr5m7lg06k8dvqnjn7d07d3fhani8d90"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/mina86/pygtrie")
(synopsis "Pure Python trie data structure implementation")
(description
@@ -9015,7 +9048,7 @@ (define-public python-pygit2
(base32 "1v34xdvh6i5cn5srwicvp0i2kvv8fzsv0v9p72ng081nsczmhgvr"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-cffi libgit2))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/libgit2/pygit2")
(synopsis "Python bindings for libgit2")
(description "Pygit2 is a set of Python bindings to the libgit2 shared library.")
@@ -9228,7 +9261,9 @@ (define-public python-norns
(base32
"1r1lcq59v6l75wkbp7mypanr69a6fv6m58v6dw3v6b4vwz5nqg0z"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-appdirs python-nose python-pyyaml))
+ (propagated-inputs (list python-appdirs python-nose python-pyyaml
+ python-setuptools))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/simonvh/norns")
(synopsis "Simple YAML-based config module")
(description "This package provides a simple YAML-based config module.")
@@ -10223,7 +10258,7 @@ (define-public python-distlib
;; NOTE: Any value works, the variable just has to be present.
(setenv "SKIP_ONLINE" "1"))))))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(inputs
(list bash-minimal))
(home-page "https://github.com/pypa/distlib")
@@ -10963,10 +10998,10 @@ (define-public python-imageio
(delete-file "tests/test_freeimage.py"))))))
(inputs (list freeimage))
(propagated-inputs
- (list python-imageio-ffmpeg python-numpy python-pillow python-tifffile))
+ (list python-imageio-ffmpeg python-numpy python-pillow python-tifffile python-setuptools))
(native-inputs
(list python-black python-flake8 python-fsspec python-pytest
- python-pytest-cov))
+ python-pytest-cov python-wheel))
(home-page "https://imageio.github.io/")
(synopsis "Library for reading and writing a wide range of image data")
(description
@@ -12183,7 +12218,9 @@ (define-public python-jaraco-test
python-pytest-cov
python-pytest-enabler
python-pytest-flake8
- python-pytest-mypy))
+ python-pytest-mypy
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/jaraco/jaraco.test")
(synopsis "Testing support by jaraco")
(description "This package provides testing support by jaraco.")
@@ -12631,6 +12668,7 @@ (define-public python-jupyter-client-bootstrap
python-pyzmq
python-tornado-6
python-traitlets))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://jupyter.org/")
(synopsis "Jupyter protocol implementation and client libraries")
(description
@@ -12668,7 +12706,9 @@ (define-public python-jupyter-client
python-pytest-timeout
python-async-generator
python-ipython
- python-ipykernel-bootstrap))
+ python-ipykernel-bootstrap
+ python-setuptools
+ python-wheel))
(properties (alist-delete 'hidden? (package-properties base))))))
(define-public python-ipykernel
@@ -12744,7 +12784,9 @@ (define-public python-ipykernel
;; and causes deprecation warnings. Using the bootstrap variant
;; avoids that.
python-pytest-bootstrap
- python-pytest-timeout))
+ python-pytest-timeout
+ python-setuptools
+ python-wheel))
(home-page "https://ipython.org")
(synopsis "IPython Kernel for Jupyter")
(description "This package provides the IPython kernel for Jupyter.")
@@ -12763,7 +12805,7 @@ (define-public python-ipykernel-bootstrap
;; left out here to break the cycle.
#:phases #~(modify-phases %standard-phases
(delete 'sanity-check))))
- (native-inputs '())
+ (native-inputs (list python-setuptools python-wheel))
(propagated-inputs
(modify-inputs (package-propagated-inputs parent)
(replace "python-jupyter-client" python-jupyter-client-bootstrap)
@@ -12833,7 +12875,9 @@ (define-public python-pubmed-parser
python-unidecode))
(native-inputs
(list python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/titipata/pubmed_parser")
(synopsis "Parser for Pubmed Open-Access Subset and MEDLINE XML repository")
(description
@@ -14266,6 +14310,7 @@ (define-public python-qnorm
"{ name = \"Maarten van der Sande\", email = \"maartenvandersande@hotmail.com\"}")
(("license = \"MIT\"") "license = { file = \"LICENSE\"}")))))))
(propagated-inputs (list python-numba python-numpy python-pandas))
+ (native-inputs (list python-setuptools python-wheel python-toml))
(home-page "https://github.com/Maarten-vd-Sande/qnorm")
(synopsis "Quantile normalization")
(description "This tool implements quantile normalization. It properly
@@ -14326,7 +14371,9 @@ (define-public python-singledispatch
(build-system pyproject-build-system)
(native-inputs
(list python-pytest
- python-six)) ; required for conversion, not at run-time
+ python-setuptools
+ python-six ; required for conversion, not at run-time
+ python-wheel))
(home-page
"https://docs.python.org/3/library/functools.html#functools.singledispatch")
(synopsis "Backport of singledispatch feature from Python 3.4")
@@ -14762,7 +14809,8 @@ (define-public python-pyproject-metadata
"0yvs59ymz5gdix34a95wxlxvk9bnvjgrzsnmnc3ws7whpfv3yasm"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-packaging))
- (native-inputs (list python-pypa-build python-pytest python-tomli))
+ (native-inputs (list python-pypa-build python-pytest python-setuptools
+ python-tomli python-wheel))
(home-page "https://github.com/FFY00/python-pyproject-metadata")
(synopsis "Dataclass for PEP 621 metadata")
(description "This project does not implement the parsing of
@@ -15595,7 +15643,8 @@ (define-public python-pyftpdlib
;; Using Pytest instead of the Makefile causes the command line tests to
;; fail on unknown Pytest arguments.
(arguments (list #:test-flags #~(list "-k" "not TestCommandLineParser")))
- (native-inputs (list python-psutil python-pytest))
+ (native-inputs (list python-psutil python-pytest python-setuptools
+ python-wheel))
(propagated-inputs (list python-pyopenssl python-pysendfile))
(home-page "https://github.com/giampaolo/pyftpdlib/")
(synopsis "Asynchronous and scalable Python FTP server library")
@@ -16386,7 +16435,8 @@ (define-public python-snuggs
"0yv1wayrw9g6k0c2f721kha7wsv0s1fdlxpf5x7f34iqzq9z272h"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-numpy python-pyparsing))
- (native-inputs (list python-hypothesis python-pytest))
+ (native-inputs (list python-hypothesis python-pytest python-setuptools
+ python-wheel))
(home-page "https://github.com/mapbox/snuggs")
(synopsis "Snuggs are S-expressions for Numpy")
(description "Snuggs are S-expressions for Numpy.")
@@ -16873,7 +16923,7 @@ (define-public python-path-bootstrap
(build-system pyproject-build-system)
(arguments
(list #:tests? #f))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools python-setuptools-scm python-wheel))
(home-page "https://github.com/jaraco/path")
(synopsis "Object-oriented file system path manipulation library")
(description "@code{path} (formerly @code{path.py}) implements path
@@ -17531,7 +17581,9 @@ (define-public python-fastjsonschema
python-pylint
python-pytest
python-pytest-benchmark
- python-pytest-cache))
+ python-pytest-cache
+ python-setuptools
+ python-wheel))
(home-page
"https://github.com/horejsek/python-fastjsonschema")
(synopsis
@@ -17614,7 +17666,7 @@ (define-public python-bleach
(delete-file-recursively "bleach/_vendor/html5lib")))))
(build-system pyproject-build-system)
(propagated-inputs (list python-html5lib python-tinycss2))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/mozilla/bleach")
(synopsis "Whitelist-based HTML-sanitizing tool")
(description "Bleach is an easy whitelist-based HTML-sanitizing tool.")
@@ -18150,7 +18202,7 @@ (define-public python-chardet
(base32
"1r9ixxnish9j3dq4h0z0cwlkr4f5lgi6d8mhbzw59hbbjlmp2qhd"))))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(build-system pyproject-build-system)
(arguments
(list #:test-flags
@@ -18364,7 +18416,7 @@ (define-public python-confection
(build-system pyproject-build-system)
(propagated-inputs (list python-pydantic python-srsly
python-typing-extensions))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/explosion/confection")
(synopsis "Config system for Python")
(description "Confection is a lightweight library that offers a
@@ -18431,7 +18483,8 @@ (define-public python-omegaconf
(propagated-inputs (list java-antlr4-runtime-python
python-pydevd
python-pyyaml))
- (native-inputs (list icedtea antlr4 python-pytest python-pytest-mock))
+ (native-inputs (list icedtea antlr4 python-pytest python-pytest-mock
+ python-setuptools python-wheel))
(home-page "https://github.com/omry/omegaconf")
(synopsis "Flexible configuration system")
(description "OmegaConf is a hierarchical configuration system and
@@ -18450,10 +18503,10 @@ (define-public python-configargparse
(base32
"1l866g1dcf2ljf8fl7ggpxk1rggry0lya4d5b264gradi1qp81p7"))))
(build-system pyproject-build-system)
- (native-inputs
- (list python-mock python-pytest))
(propagated-inputs
(list python-pyyaml))
+ (native-inputs
+ (list python-mock python-pytest python-setuptools python-wheel))
(synopsis "Replacement for argparse")
(description "A drop-in replacement for argparse that allows options to also
be set via config files and/or environment variables.")
@@ -19600,6 +19653,7 @@ (define-public python-xdg
(base32
"14hwk9j5zjc8rvirw95mrb07zdnpjaxjx2mj3rnq8pnlyaa809r4"))))
(build-system pyproject-build-system)
+ (arguments (list #:tests? #f)) ; No tests in PyPi tarball.
(native-inputs
(list python-poetry-core))
(home-page "https://github.com/srstevenson/xdg-base-dirs")
@@ -20118,7 +20172,8 @@ (define-public python-cesium
python-scikit-learn
python-scipy
python-toolz))
- (native-inputs (list python-cython python-pytest python-setuptools-scm))
+ (native-inputs (list python-cython python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://pypi.org/project/cesium/")
(synopsis "Library for time-series feature extraction and processing")
(description
@@ -20195,7 +20250,8 @@ (define-public python-pyqtgraph
(lambda _
(setenv "QT_QPA_PLATFORM" "offscreen"))))))
(native-inputs
- (list python-pytest python-pytest-cov python-pytest-xdist))
+ (list python-pytest python-pytest-cov python-pytest-xdist
+ python-setuptools python-wheel))
(inputs
(list qtbase-5))
(propagated-inputs
@@ -20383,7 +20439,9 @@ (define-public python-codespell
python-pytest
python-pytest-cov
python-pytest-dependency
- python-tomli))
+ python-tomli
+ python-setuptools
+ python-wheel))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -21517,7 +21575,9 @@ (define-public python-inflect
python-pytest-flake8
python-pytest-mypy
;; For the version number
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/jaraco/inflect")
(synopsis "Correctly generate plurals, singular nouns, ordinals, indefinite articles")
(description
@@ -23789,7 +23849,8 @@ (define-public python-xopen
(propagated-inputs
(list pigz python-isal python-typing-extensions))
(native-inputs
- (list python-pytest python-pytest-timeout python-setuptools-scm))
+ (list python-pytest python-pytest-timeout python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/marcelm/xopen/")
(synopsis "Open compressed files transparently")
(description "This module provides an @code{xopen} function that works
@@ -23873,6 +23934,7 @@ (define-public python-chevron
"1gqfh00ics2k1sm5g46l3bi8cl5fc5d1cwzh1ylvcxvdvypklqc7"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/noahmorrison/chevron")
(synopsis "Mustache templating language renderer")
(description "This package provides a Python implementation of the
@@ -23935,7 +23997,9 @@ (define-public python-duckdb
python-pyarrow
python-pytest
python-pytest-runner
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://www.duckdb.org")
(synopsis "DuckDB embedded database")
(description "DuckDB is an in-process SQL OLAP database management
@@ -24856,6 +24920,7 @@ (define-public python-diff-cover
python-jinja2
python-pluggy
python-pygments
+ python-setuptools ; For pkg_resources.
python-tomli))
(native-inputs
(list python-flake8
@@ -25070,7 +25135,8 @@ (define-public python-gtts
;; Disable tests that require internet.
(list #:test-flags '(list "-k" "not net")))
(native-inputs
- (list python-pytest python-testfixtures python-click python-requests))
+ (list python-pytest python-testfixtures python-click python-requests
+ python-setuptools python-wheel))
(home-page "https://github.com/pndurette/gTTS")
(synopsis "Google Translate text-to-speech interface")
(description
@@ -25601,7 +25667,9 @@ (define-public python-marshmallow
python-mypy
python-pytest
python-pytz
- python-simplejson))
+ python-simplejson
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/marshmallow-code/marshmallow")
(synopsis "Convert complex datatypes to and from native Python datatypes")
(description "@code{marshmallow} provides a library for converting complex
@@ -25663,7 +25731,9 @@ (define-public python-apispec
python-marshmallow
python-mypy
python-pytest
- python-pyyaml))
+ python-pyyaml
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/marshmallow-code/apispec")
(synopsis "Swagger/OpenAPI specification generator")
(description "@code{python-apispec} is a pluggable API specification
@@ -25682,7 +25752,7 @@ (define-public python-apispec-webframeworks
(base32
"1wyw30402xq2a8icrsjmy9v43jyvawcjd85ccb2zicqlg4k5pcqd"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-apispec))
+ (propagated-inputs (list python-apispec python-setuptools))
(native-inputs
(list python-bottle
python-flake8
@@ -25692,7 +25762,8 @@ (define-public python-apispec-webframeworks
python-pytest
python-pyyaml
python-tornado
- python-tox))
+ python-tox
+ python-wheel))
(home-page "https://github.com/marshmallow-code/apispec-webframeworks")
(synopsis "Web framework plugins for apispec")
(description "This package provides plugins for using @code{apispec} with
@@ -26412,7 +26483,9 @@ (define-public python-tempora
python-pytest-mypy
python-setuptools-scm
python-types-freezegun
- python-types-pytz))
+ python-types-pytz
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-jaraco-functools python-pytz))
(home-page "https://github.com/jaraco/tempora")
(synopsis "Python date and time objects and routines")
@@ -26536,7 +26609,9 @@ (define-public python-zict
(list python-pytest
python-pytest-asyncio
python-pytest-repeat
- python-pytest-timeout))
+ python-pytest-timeout
+ python-setuptools
+ python-wheel))
(home-page "https://zict.readthedocs.io/en/latest/")
(synopsis "Composable mutable mapping tools")
(description "This package provides abstract @code{MutableMapping} classes
@@ -26726,7 +26801,7 @@ (define-public python-whatever
(base32 "1q7ajgqjfivxqsqgnhp4lc4p6jxyh4zprcsdbpd6dw54inaf0av5"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/Suor/whatever")
(synopsis "Make anonymous functions by partial application of operators")
(description "@code{whatever} provides an easy way to make anonymous
@@ -26748,7 +26823,7 @@ (define-public python-funcy
(file-name (git-file-name name version))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-whatever))
+ (list python-pytest python-whatever python-setuptools python-wheel))
(home-page "https://github.com/Suor/funcy")
(synopsis "Functional tools")
(description "@code{funcy} is a library that provides functional tools.
@@ -27227,7 +27302,7 @@ (define-public python-pybloom-live
"040i6bjqvl33j30v865shsk30s3h7f16pqwiaj5kig857dfmqm4r"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-bitarray python-xxhash))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/joseph-fox/python-bloomfilter")
(synopsis "Bloom filter")
(description "This package provides a scalable Bloom filter implemented in
@@ -28392,7 +28467,8 @@ (define-public python-numcodecs
python-msgpack
python-typing-extensions))
(native-inputs
- (list python-cython python-pytest python-setuptools-scm))
+ (list python-cython python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/zarr-developers/numcodecs")
(synopsis "Buffer compression and transformation codecs")
(description
@@ -28518,6 +28594,7 @@ (define-public python-anndata
python-pandas
python-scipy
python-scikit-learn
+ python-setuptools ; For pkg_resources.
python-zarr))
(native-inputs
(list python-awkward
@@ -28564,7 +28641,7 @@ (define-public python-dill
(with-directory-excursion "/tmp"
(invoke "nosetests" "-v"))))))))
(native-inputs
- (list python-nose))
+ (list python-nose python-setuptools python-wheel))
(home-page "https://pypi.org/project/dill/")
(synopsis "Serialize all of Python")
(description "Dill extends Python's @code{pickle} module for serializing
@@ -28616,6 +28693,7 @@ (define-public python-multiprocess
(invoke "python" "-m" "multiprocess.tests")))))))
(propagated-inputs
(list python-dill))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://pypi.org/project/multiprocess/")
(synopsis "Multiprocessing and multithreading in Python")
(description
@@ -28928,7 +29006,8 @@ (define-public python-fsspec
(propagated-inputs
(list python-aiohttp python-libarchive-c python-requests python-tqdm))
(native-inputs
- (list python-pytest python-pytest-mock python-numpy))
+ (list python-pytest python-pytest-mock python-numpy python-setuptools
+ python-wheel))
(home-page "https://github.com/intake/filesystem_spec")
(synopsis "File-system specification")
(description "The purpose of this package is to produce a template or
@@ -29239,6 +29318,7 @@ (define-public python-absl-py
(base32
"0ga3b0m8lfsv1m3260p83lhis52yvz3d42q8gip4gfj823849hnj"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/abseil/abseil-py")
(synopsis "Abseil Python common libraries")
(description
@@ -29543,7 +29623,8 @@ (define-public python-trio-typing
(sha256
(base32 "15wa66cs165wawh4pi808ac43n67b8jqddi5ppdcbkj5gfi68hpi"))))
(build-system pyproject-build-system)
- (native-inputs (list python-attrs python-pytest))
+ (native-inputs (list python-attrs python-pytest python-setuptools
+ python-wheel))
(propagated-inputs
(list python-mypy python-mypy-extensions python-trio
python-typing-extensions))
@@ -30809,7 +30890,7 @@ (define-public python-funcparserlib
(when tests?
(invoke "python" "-m" "unittest" "discover" "-v")))))))
;; ModuleNotFoundError: No module named 'poetry'
- (native-inputs (list python-poetry-core))
+ (native-inputs (list python-poetry-core python-six))
(home-page "https://github.com/vlasovskikh/funcparserlib")
(synopsis
"Recursive descent parsing library based on functional combinators")
@@ -31085,7 +31166,9 @@ (define-public python-watchgod
python-pytest-cov
python-pytest-mock
python-pytest-sugar
- python-pytest-toolbox))
+ python-pytest-toolbox
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/samuelcolvin/watchgod")
(synopsis "Simple, modern file watching and code reload in Python")
(description
@@ -32486,7 +32569,7 @@ (define-public python-blessed
;; Avoid python-pytest-coverage
#:test-flags '(list "-c /dev/null")))
(propagated-inputs (list python-six python-wcwidth))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/jquast/blessed")
(synopsis "Wrapper around terminal capabilities")
(description
@@ -32761,7 +32844,8 @@ (define-public python-dateparser
(list python-dateutil python-pytz python-regex python-ruamel.yaml
python-tzlocal))
(native-inputs
- (list python-flake8 python-pytest python-parameterized tzdata-for-tests))
+ (list python-flake8 python-pytest python-parameterized tzdata-for-tests
+ python-setuptools python-wheel))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -33662,7 +33746,9 @@ (define-public python-loguru
python-sphinx
python-sphinx-autobuild
python-sphinx-rtd-theme
- python-tox))
+ python-tox
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/Delgan/loguru")
(synopsis "Python logging made (stupidly) simple")
(description "Python logging made (stupidly) simple")
@@ -36317,6 +36403,7 @@ (define-public python-types-requests
"0cas3cjkhrvsz2rmqnhqiihy9j79wxi9xbih8jk0p9r48c2q3iyy"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-types-urllib3))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/python/typeshed")
(synopsis "Typing stubs for requests")
(description "This package provides typing stubs for requests.")
@@ -36349,6 +36436,7 @@ (define-public python-types-urllib3
(base32
"0zcipjdnbnc8ymk8mh9n5mypa0qr03rqj98lbmahldcdrrap6md1"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/python/typeshed")
(synopsis "Typing stubs for urllib3")
(description "This package provides typing stubs for urllib3.")
@@ -36366,6 +36454,7 @@ (define-public python-typeshed-client
"1vdwp1jjg27b22qxgm49v21nb8vm1iki3bfsm0fnq2rsz5alfwz2"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-importlib-resources))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/JelleZijlstra/typeshed_client")
(synopsis "Library for accessing stubs in typeshed")
(description
@@ -36782,7 +36871,9 @@ (define-public python-srsly
python-pytest-timeout
python-mock
python-numpy
- python-psutil))
+ python-psutil
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/explosion/srsly")
(synopsis "Serialization utilities for Python")
(description "This package bundles some of the best Python serialization
@@ -37034,7 +37125,7 @@ (define-public python-iteround
(base32 "1irw4sqrsgpc0ibxdv1hlx0d0jr1fqs48bj6mpfylzqkag9ywlfj"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/cgdeboer/iteround")
(synopsis "Sum-safe rounding for Iterables")
(description "Iteround is a standard library sum-safe rounding library for
@@ -37148,7 +37239,10 @@ (define-public python-deepdiff
python-mock
python-numpy
python-pytest
- python-pyyaml))
+ python-pyyaml
+ python-setuptools
+ python-wheel
+ python-toml))
(home-page "https://github.com/seperman/deepdiff")
(synopsis "Deep difference and search of any Python object/data")
(description
@@ -37177,7 +37271,9 @@ (define-public python-deepmerge
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version))))))
(native-inputs
(list python-setuptools-scm
- python-pytest))
+ python-pytest
+ python-setuptools
+ python-wheel))
(home-page "https://deepmerge.readthedocs.io/en/latest/")
(synopsis "Merge nested data structures")
(description
@@ -37629,7 +37725,7 @@ (define-public python-cogapp
(base32
"1c0xx3p3lzrlyqhmccyq9c50f8v9pqk2992gb4nl50h2yy1m3s8v"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://nedbatchelder.com/code/cog")
(synopsis "Content generation tool that leverages Python")
(description "Cog is a file generation tool. It allows using pieces of
@@ -38070,7 +38166,10 @@ (define-public staticsite
python-ruamel.yaml
python-slugify
python-tornado
- tzdata-for-tests))
+ tzdata-for-tests
+ python-setuptools
+ python-wheel
+ python-toml))
(home-page "https://github.com/spanezz/staticsite")
(synopsis "Static site generator")
(description "Statistic is a static site generator based on Markdown and
@@ -38163,8 +38262,9 @@ (define-public python-zbarlight
(base32
"1v5c9bim8af6g8kgxp2dhm96n5vkr8sqi56w0bdh1xy49v03lw3g"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-pillow))
+ (propagated-inputs (list python-pillow python-setuptools))
(inputs (list zbar))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/Polyconseil/zbarlight")
(synopsis "Simple Python wrapper for the zbar barcode library")
(description "Zbarlight is a simple wrapper for the zbar library. It can
@@ -38183,6 +38283,7 @@ (define-public python-zeroc-ice
"0bqkrjxp2fbz34x3wxkxji39kxinypzg8q2994sibiay29mpipxb"))))
(build-system pyproject-build-system)
(inputs (list openssl))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://zeroc.com")
(synopsis "RPC framework")
(description
diff --git a/gnu/packages/qt.scm b/gnu/packages/qt.scm
index cd0b3d6f9d..e02e7fbfc3 100644
--- a/gnu/packages/qt.scm
+++ b/gnu/packages/qt.scm
@@ -4002,9 +4002,9 @@ (define-public python-sip
(list python-wrapper python-setuptools python-setuptools-scm-next))
(propagated-inputs
(list python-tomli
- python-packaging))
- ;; no test.
- (arguments (list #:tests? #f))
+ python-packaging
+ python-setuptools
+ python-wheel))
(home-page "https://www.riverbankcomputing.com/software/sip/intro")
(synopsis "Python binding creator for C and C++ libraries")
(description
diff --git a/gnu/packages/rpc.scm b/gnu/packages/rpc.scm
index 075a740a88..c083074cc7 100644
--- a/gnu/packages/rpc.scm
+++ b/gnu/packages/rpc.scm
@@ -254,7 +254,7 @@ (define-public python-grpcio
(inputs
(list abseil-cpp-20211102.0 c-ares grpc-for-python-grpcio openssl re2 zlib))
(native-inputs
- (list python-cython))
+ (list python-cython python-setuptools python-wheel))
(propagated-inputs
(list python-six))
(home-page "https://grpc.io")
diff --git a/gnu/packages/serialization.scm b/gnu/packages/serialization.scm
index 6a4368d59a..80dee15726 100644
--- a/gnu/packages/serialization.scm
+++ b/gnu/packages/serialization.scm
@@ -746,7 +746,9 @@ (define-public python-msgspec
python-mypy
python-pytest
python-setuptools-scm
- python-versioneer))
+ python-versioneer
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-pyyaml python-tomli python-tomli-w))
(home-page "https://jcristharif.com/msgspec/")
(synopsis "Fast serialization/validation library")
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 472d67c016..aee7ff3809 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -453,7 +453,9 @@ (define-public python-sphinx-panels
(propagated-inputs (list python-docutils-0.15 python-sphinx-4))
(native-inputs
(list python-pytest
- python-pytest-regressions))
+ python-pytest-regressions
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/executablebooks/sphinx-panels")
(synopsis "Sphinx extension for creating panels in a grid layout")
(description
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index c2bcc776a6..1c1164b432 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2191,7 +2191,7 @@ (define-public python-vega-datasets
;; Remove dataset with unclear license.
(lambda _
(delete-file "vega_datasets/_data/la-riots.csv"))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(propagated-inputs (list python-pandas))
(home-page "https://github.com/altair-viz/vega_datasets")
(synopsis "Example datasets used by Vega-related projects")
@@ -2236,6 +2236,7 @@ (define-public python-altair
python-jsonschema
python-numpy
python-pandas
+ python-setuptools
python-toolz
python-typing-extensions))
(native-inputs (list python-black
@@ -2323,7 +2324,8 @@ (define-public python-hdmedians
(lambda _
;; Cython extensions have to be built before running the tests.
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
- (propagated-inputs (list python-cython python-numpy))
+ (propagated-inputs (list python-cython python-numpy python-setuptools
+ python-wheel))
(native-inputs (list python-nose))
(home-page "http://github.com/daleroberts/hdmedians")
(synopsis "High-dimensional medians")
@@ -2374,7 +2376,9 @@ (define-public python-arviz
python-scipy
python-typing-extensions
python-xarray
- python-xarray-einstats))
+ python-xarray-einstats
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/arviz-devs/arviz")
(synopsis "Exploratory analysis of Bayesian models")
(description
@@ -2670,7 +2674,9 @@ (define-public python-statsmodels
python-pytest
python-pytest-randomly
python-pytest-xdist
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page
(string-append "https://www.statsmodels.org/v" version "/"))
(synopsis "Statistical modeling and econometrics in Python")
diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm
index 6fb2684326..60ea8e993e 100644
--- a/gnu/packages/terminals.scm
+++ b/gnu/packages/terminals.scm
@@ -115,6 +115,7 @@ (define-module (gnu packages terminals)
#:use-module (gnu packages popt)
#:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt)
@@ -255,8 +256,8 @@ (define-public asciinema
(substitute* "tests/pty_test.py"
(("python3") (search-input-file inputs "/bin/python3"))))))))
(native-inputs
- ;; For tests.
- (list python-pytest))
+ (list python-pytest ; For tests.
+ python-setuptools python-wheel))
(home-page "https://asciinema.org")
(synopsis "Terminal session recorder")
(description
diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm
index dce37f3df4..cb89d04bf5 100644
--- a/gnu/packages/time.scm
+++ b/gnu/packages/time.scm
@@ -285,6 +285,7 @@ (define-public python-dateutils
"1wg3f3imjq3snvjccv64h5498pqv9xz664xhni7bsh8mnay91p83"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-dateutil python-pytz))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/jmcantrell/python-dateutils")
(synopsis "Various utilities for working with date and datetime objects")
(description
@@ -368,7 +369,7 @@ (define-public python-timezonefinder
;; It's optional, remove this constrain where python-pytz is updated.
#:test-flags #~(list "-k" "not test_with_pytz")))
(native-inputs
- (list python-poetry-core python-pytest))
+ (list python-poetry-core python-pytest python-setuptools))
(propagated-inputs
(list python-cffi python-h3-3 python-numba python-numpy python-pytz))
(home-page "https://timezonefinder.michelfe.it/gui")
diff --git a/gnu/packages/tor.scm b/gnu/packages/tor.scm
index 5de1146ce5..421f6733f8 100644
--- a/gnu/packages/tor.scm
+++ b/gnu/packages/tor.scm
@@ -50,6 +50,7 @@ (define-module (gnu packages tor)
#:use-module (gnu packages glib)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
@@ -447,7 +448,8 @@ (define-public tractor
"1542g6alycwlmvndxcijzn4d5lgycmxxb78gqd8qwgm9kw0fnr3q"))))
(build-system pyproject-build-system)
(native-inputs
- (list (list glib "bin"))) ; for glib-compile-schemas.
+ (list python-setuptools python-wheel
+ (list glib "bin"))) ; for glib-compile-schemas.
(inputs
(list python-fire
python-psutil
diff --git a/gnu/packages/tree-sitter.scm b/gnu/packages/tree-sitter.scm
index 2f6e6809d7..8f5bcb8827 100644
--- a/gnu/packages/tree-sitter.scm
+++ b/gnu/packages/tree-sitter.scm
@@ -32,6 +32,7 @@ (define-module (gnu packages tree-sitter)
#:use-module (gnu packages graphviz)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages node)
+ #:use-module (gnu packages python-build)
#:use-module (guix build-system cargo)
#:use-module (guix build-system gnu)
#:use-module (guix build-system pyproject)
@@ -89,7 +90,8 @@ (define-public python-tree-sitter
name)))))))))
(inputs (list tree-sitter))
(native-inputs
- (list tree-sitter-python tree-sitter-javascript))
+ (list tree-sitter-python tree-sitter-javascript
+ python-setuptools python-wheel))
(home-page "https://github.com/tree-sitter/py-tree-sitter")
(synopsis "Python bindings to the Tree-sitter parsing library")
(description "This package provides Python bindings to the
diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 20ec379425..000e0ecb44 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -6181,7 +6181,7 @@ (define-public gaupol
"1z9j3r9pm4rdynlmhgsgnwnnaqw5274yfy4kyillgd77msnpbhaw"))))
(build-system pyproject-build-system)
(native-inputs
- (list gettext-minimal pkg-config))
+ (list gettext-minimal pkg-config python-setuptools python-wheel))
(inputs
(list bash-minimal
python-pygobject
diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm
index 6deebdaf2e..e77578cf18 100644
--- a/gnu/packages/vim.scm
+++ b/gnu/packages/vim.scm
@@ -72,6 +72,7 @@ (define-module (gnu packages vim)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages ruby)
#:use-module (gnu packages serialization)
@@ -1030,7 +1031,12 @@ (define-public python-neovim-remote
(base32
"00kxlb3f1k7iaxzpsr07scavmnyg8c1jmicmr13mfk2lcdac6g2b"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-psutil python-pynvim))
+ (native-inputs
+ (list python-wheel))
+ (propagated-inputs
+ (list python-psutil
+ python-pynvim
+ python-setuptools))
(home-page "https://github.com/mhinz/neovim-remote")
(synopsis "Control nvim processes using `nvr` commandline tool")
(description "This package provide a `nvr` command, which can open File in
diff --git a/guix/build-system/pyproject.scm b/guix/build-system/pyproject.scm
index 9a27ebee35..28fd897494 100644
--- a/guix/build-system/pyproject.scm
+++ b/guix/build-system/pyproject.scm
@@ -52,7 +52,12 @@ (define (default-python)
"Return the default Python package."
;; Lazily resolve the binding to avoid a circular dependency.
(let ((python (resolve-interface '(gnu packages python))))
- (module-ref python 'python-toolchain)))
+ ;; We are using python-sans-pip-wrapper, because it does not contain
+ ;; setuptools. This allows us to skip the dependency on setuptools for
+ ;; packages which don’t need it. And it allows us to more easily swap
+ ;; out setuptools if a different version is required.
+ ;; Using python-toolchain here might cause dependency cycles.
+ (module-ref python 'python-sans-pip-wrapper)))
(define sanity-check.py
(search-auxiliary-file "python/sanity-check.py"))
--
cgit v1.2.3